+++ /dev/null
-/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
-
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://www.centreleonberard.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
-
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
-
- It is distributed under dual licence
-
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-===========================================================================**/
-
-#include <algorithm>
-#include <QMessageBox>
-#include <QInputDialog>
-#include <QTimer>
-#include "QTreePushButton.h"
-#include <QUrl>
-#include <QSettings>
-
-// VV include
-#include "vvMainWindow.h"
-#include "vvHelpDialog.h"
-#include "vvRegisterForm.h"
-#include "vvDocumentation.h"
-#include "vvProgressDialog.h"
-#include "vvQDicomSeriesSelector.h"
-#include "vvSlicerManager.h"
-#include "clitkImageCommon.h"
-#include "vvSlicer.h"
-#include "vvInteractorStyleNavigator.h"
-#include "vvImageWriter.h"
-#include "vvSegmentationDialog.h"
-#include "vvSurfaceViewerDialog.h"
-#include "vvDeformationDialog.h"
-#include "vvImageWarp.h"
-#include "vvUtils.h"
-#include "vvMidPosition.h"
-#include "vvMesh.h"
-#include "vvStructSelector.h"
-#include "vvMeshReader.h"
-#include "vvSaveState.h"
-#include "vvReadState.h"
-#include "clitkConfiguration.h"
-
-// ITK include
-#include <itkImage.h>
-#include <itkImageFileReader.h>
-#include <itkByteSwapper.h>
-#include <itkCommand.h>
-#include <itkNumericSeriesFileNames.h>
-
-// VTK include
-#include <vtkImageData.h>
-#include <vtkImageActor.h>
-#include <vtkCornerAnnotation.h>
-#include <vtkRenderWindow.h>
-#include <vtkRenderWindowInteractor.h>
-#include <vtkRenderer.h>
-#include <vtkRendererCollection.h>
-#include <vtkWindowToImageFilter.h>
-#include <vtkBMPWriter.h>
-#include <vtkTIFFWriter.h>
-#include <vtkPNMWriter.h>
-#include <vtkPNGWriter.h>
-#include <vtkJPEGWriter.h>
-#include <vtkGenericMovieWriter.h>
-#ifdef CLITK_EXPERIMENTAL
-# include <vvAnimatedGIFWriter.h>
-#endif
-#ifdef VTK_USE_VIDEO_FOR_WINDOWS
-# include <vtkAVIWriter.h>
-#endif
-#ifdef VTK_USE_FFMPEG_ENCODER
-# include <vtkFFMPEGWriter.h>
-#endif
-#ifdef VTK_USE_MPEG2_ENCODER
-# include <vtkMPEG2Writer.h>
-#endif
-#include <vtkMatrix4x4.h>
-#include <vtkTransform.h>
-
-// Standard includes
-#include <iostream>
-#include <sstream>
-#include <iomanip>
-
-#define COLUMN_TREE 0
-#define COLUMN_UL_VIEW 1
-#define COLUMN_UR_VIEW 2
-#define COLUMN_DL_VIEW 3
-#define COLUMN_DR_VIEW 4
-#define COLUMN_CLOSE_IMAGE 5
-#define COLUMN_RELOAD_IMAGE 6
-#define COLUMN_IMAGE_NAME 7
-
-#ifdef CLITK_PRIVATE_FEATURES
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf)"
-#else
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
-#endif
-
-
-/*Data Tree values
- 0,Qt::UserRole full filename
- 1,Qt::CheckStateRole checkbutton UL View
- 1,Qt::UserRole overlay, fusion or vector
- 2,Qt::CheckStateRole checkbutton UR View
- 3,Qt::CheckStateRole checkbutton DL View
- 4,Qt::CheckStateRole checkbutton DR View
- 5,0 short filename
- 5,Qt::UserRole mSlicerManager id*/
-
-//------------------------------------------------------------------------------
-vvMainWindow::vvMainWindow():vvMainWindowBase()
-{
- setupUi(this); // this sets up the GUI
-
- mInputPathName = "";
- mMenuTools = menuTools;
- // mMenuSegmentation = menuSegmentation;
- mContextMenu = &contextMenu;
- mMenuExperimentalTools = menuExperimental;
- mMainWidget = this;
- mCurrentTime = -1;
- mCurrentSelectedImageId = "";
- mCurrentPickedImageId = "";
- mCurrentPickedImageIndex = 0;
-
- //Init the contextMenu
- this->setContextMenuPolicy(Qt::CustomContextMenu);
- contextActions.resize(0);
- QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
- tr("O&pen new Image"));
- actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
- connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
- contextActions.push_back(actionOpen_new_image);
- contextMenu.addSeparator();
-
- QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
- tr("Close Current Image"));
- connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
- contextActions.push_back(actionClose_Image);
-
- QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
- tr("Reload Current Image"));
- connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
- contextActions.push_back(actionReload_image);
-
- QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current Image"));
- connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
- contextActions.push_back(actionSave_image);
-
- QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current State"));
- connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
- contextActions.push_back(actionSave_state);
-
- QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Read Saved State"));
- connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
- contextActions.push_back(actionRead_state);
-
- contextMenu.addSeparator();
-
- contextMenu.addAction(actionAdd_VF_to_current_Image);
- contextActions.push_back(actionAdd_VF_to_current_Image);
-
- //QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- // tr("Add overlay image to current image"));
- contextMenu.addAction(actionAdd_overlay_image_to_current_image);
- contextActions.push_back(actionAdd_overlay_image_to_current_image);
-
- contextMenu.addAction(actionAdd_fusion_image);
- contextActions.push_back(actionAdd_fusion_image);
-
- contextMenu.addAction(actionAdd_USSequence_toCT);
- contextActions.push_back(actionAdd_USSequence_toCT);
-
-
- contextMenu.addSeparator();
- QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
- tr("Reset transformation to identity"));
- connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
-
- // TRIAL DS
- /*
- QMenu * m = new QMenu(menubar);
- m->setTitle("TOTO");
- // m->setObjectName(QString::fromUtf8("TOTOTO"));
- contextMenu.addMenu(m);
- QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON"));
- QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON2"));
- m->addAction(a);
- m->addAction(b);
- connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
- */
-
- //init the DataTree
- mSlicerManagers.resize(0);
-
- QStringList header;
- header.append("");
- header.append("TL");
- header.append("TR");
- header.append("BL");
- header.append("BR");
- header.append("");
- header.append("");
- header.append("Name");
-
- DataTree->setHeaderLabels(header);
- DataTree->resizeColumnToContents(COLUMN_TREE);
- DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
- DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
- DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
- DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
- DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
- DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
- DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
-
- viewMode = 1;
- documentation = new vvDocumentation();
- help_dialog = new vvHelpDialog();
- dicomSeriesSelector = new vvDicomSeriesSelector();
-
- inverseButton->setEnabled(0);
- actionAdd_overlay_image_to_current_image->setEnabled(0);
- actionSave_As->setEnabled(0);
- actionAdd_VF_to_current_Image->setEnabled(0);
- actionAdd_fusion_image->setEnabled(0);
- actionAdd_USSequence_toCT->setEnabled(0);
-
- //init the sliders
- verticalSliders.push_back(NOVerticalSlider);
- verticalSliders.push_back(NEVerticalSlider);
- verticalSliders.push_back(SOVerticalSlider);
- verticalSliders.push_back(SEVerticalSlider);
-
- for (int i =0; i < 4; i++)
- verticalSliders[i]->hide();
-
- horizontalSliders.push_back(NOHorizontalSlider);
- horizontalSliders.push_back(NEHorizontalSlider);
- horizontalSliders.push_back(SOHorizontalSlider);
- horizontalSliders.push_back(SEHorizontalSlider);
-
- for (int i =0; i < 4; i++)
- horizontalSliders[i]->hide();
-
-
- connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
- connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
- connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
- connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
-
- connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
- connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
- connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
- connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
-
- //connect everything
- connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
- connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
- connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
- connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
- connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
- connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
- connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
- connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
- connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
- connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
- connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
- connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
- connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
- connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
- connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
- connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
- connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
- connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
- connect(actionAdd_USSequence_toCT,SIGNAL(triggered()), this,SLOT(SelectFusionSequence()));
- connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
- connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
- connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
-
-
- ///////////////////////////////////////////////
- connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
- connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
- ///////////////////////////////////////////////
-
- actionNorth_East_Window->setEnabled(0);
- actionNorth_West_Window->setEnabled(0);
- actionSouth_East_Window->setEnabled(0);
- actionSouth_West_Window->setEnabled(0);
-
- connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
- connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
- connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
- connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
- connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
-
- connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
- connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
- SLOT(DisplayChanged(QTreeWidgetItem*, int)));
-
- connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
- connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
- connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
- connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
- connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
- connect(slicingPresetComboBox, SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateSlicingPreset()));
- connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
- connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
-
- connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
-
- connect(linkPanel,SIGNAL(addLink(QString,QString,bool)),this,SLOT(AddLink(QString,QString,bool)));
- connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
- connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
- connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
- this,SLOT(SetOverlayProperty(int,int,double,double)));
- connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
- this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
- connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
-
- connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int)),
- this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int)));
-
-
- playMode = 0;//pause
- mFrameRate = 10;
- playButton->setEnabled(0);
- frameRateLabel->setEnabled(0);
- frameRateSpinBox->setEnabled(0);
- connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
- connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
-
- goToCursorPushButton->setEnabled(0);
- connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
-
- NOViewWidget->hide();
- NEViewWidget->hide();
- SOViewWidget->hide();
- SEViewWidget->hide();
-
- //Recently opened files
- std::list<std::string> recent_files = GetRecentlyOpenedImages();
- recentlyOpenedFilesMenu=NULL;
- if ( !recent_files.empty() ) {
- createRecentlyOpenedFilesMenu();
- updateRecentlyOpenedFilesMenu(recent_files);
- }
-
- // Adding all new tools (insertion in the menu)
- vvToolManager::GetInstance()->InsertToolsInMenu(this);
- vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
-
- if (!CLITK_EXPERIMENTAL)
- menuExperimental->menuAction()->setVisible(false);
-
-
- QTimer * timerMemory = new QTimer(this);
- //timerMemory->setInterval(5);
- connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
- timerMemory->start(2000);
-
-}
-//------------------------------------------------------------------------------
-void vvMainWindow::show()
-{
- vvMainWindowBase::show();
- PopupRegisterForm(true);
-}
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateMemoryUsage()
-{
- // clitk::PrintMemory(true);
- if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
- else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::createRecentlyOpenedFilesMenu()
-{
- recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
- recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
- menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
- menuFile->insertSeparator(actionOpen_Image_With_Time);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-
-void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
-{
- if(recentlyOpenedFilesMenu==NULL) {
- createRecentlyOpenedFilesMenu();
- } else {
- recentlyOpenedFilesMenu->clear();
- }
- for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
- QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
- recentlyOpenedFilesMenu->addAction(current);
- connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ComputeMidPosition()
-{
- bool ok;
- int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
- if (ok) {
- vvMidPosition midp;
- midp.slicer_manager = mSlicerManagers[index];
- midp.reference_image_index = ref;
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- midp.Update();
- if (midp.error)
- QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
- else {
- QFileInfo info(midp.slicer_manager->GetFileName().c_str());
- AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
- }
- QApplication::restoreOverrideCursor();
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
-{
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,"filename.vtk");
- item->setData(1,Qt::UserRole,tr("contour"));
- QBrush brush;
- brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
- brush.setStyle(Qt::SolidPattern);
- item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
-
- for (int j = 1; j <= 4; j++)
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
-
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- rButton->setEnabled(false);
- //Not implemented
- //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(image_index)->setExpanded(1);
- DataTree->topLevelItem(image_index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
- QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
-
- UpdateTree();
- mSlicerManagers[image_index]->AddContour(contour,propagation);
- mSlicerManagers[image_index]->Render();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenVTKContour()
-{
- if (mSlicerManagers.size() > 0) {
- QString Extensions = "Images ( *.vtk *.obj)";
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
- if (file.isNull())
- return;
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- vvMeshReader reader;
- reader.SetImage(mSlicerManagers[index]->GetImage());
- reader.SetModeToVTK();
- reader.SetFilename(file.toStdString());
- reader.Update();
- AddContour(index,reader.GetOutput()[0],false);
- QApplication::restoreOverrideCursor();
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddDCStructContour(int index, QString file)
-{
- vvMeshReader reader;
- reader.SetFilename(file.toStdString());
- vvStructSelector selector;
- selector.SetStructures(reader.GetROINames());
- if (!mSlicerManagers[index]->GetVF().IsNull())
- selector.EnablePropagationCheckBox();
- if (selector.exec()) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- reader.SetSelectedItems(selector.getSelectedItems());
- reader.SetImage(mSlicerManagers[index]->GetImage());
- if (selector.PropagationEnabled())
- reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
- reader.Update();
- std::vector<vvMesh::Pointer> contours=reader.GetOutput();
- for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
- i!=contours.end(); i++)
- AddContour(index,*i,selector.PropagationEnabled());
- QApplication::restoreOverrideCursor();
- }
-}
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenDCStructContour()
-{
- if (mSlicerManagers.size() > 0) {
- QString Extensions = "Dicom Files ( *.dcm RS*)";
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
- if (file.isNull())
- return;
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- AddDCStructContour(index, file);
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ComputeDeformableRegistration()
-{
- if (mSlicerManagers.size() > 0) {
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- vvDeformationDialog dialog(index,mSlicerManagers);
- if (dialog.exec()) {
- std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
- AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
- WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
- } else
- std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
- } else QMessageBox::information(this, "Need to open image","You must open an image first.");
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::WarpImage()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- if (!mSlicerManagers[index]->GetVF().IsNull()) {
- bool ok;
- int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
- if (ok) {
- WarpImage(mSlicerManagers[index],ref);
- }
- } else
- QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
-{
- if (!selected_slicer->GetVF().IsNull()) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- QFileInfo info(selected_slicer->GetFileName().c_str());
- vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
- reference_phase,this);
- if (warp.ComputeWarpedImage()) {
- AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
- AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
- AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
- }
- } else
- QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-vvMainWindow::~vvMainWindow()
-{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i] != NULL)
- delete mSlicerManagers[i];
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-QTabWidget * vvMainWindow::GetTab()
-{
- return tabWidget;
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::MergeImages()
-{
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
- mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
- std::vector<std::string> vector;
-
- unsigned int currentDim = 0;
- std::vector<double> currentSpacing;
- std::vector<int> currentSize;
- std::vector<double> currentOrigin;
-
- for (int i = 0; i < files.size(); i++) {
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(files[i].toStdString().c_str());
- reader->ReadImageInformation();
- if (reader) {
- //NOViewWidget->hide();
- //NEViewWidget->hide();
- //SOViewWidget->hide();
- //SEViewWidget->hide();
- if (i == 0)
- currentDim = reader->GetNumberOfDimensions();
- bool IsOk = true;
- for (unsigned int j = 0; j < currentDim; j++) {
- if (i == 0) {
- if (j == 0) {
- currentSpacing.resize(currentDim);
- currentSize.resize(currentDim);
- currentOrigin.resize(currentDim);
- }
- currentOrigin[j] = reader->GetOrigin(j);
- currentSpacing[j] = reader->GetSpacing(j);
- currentSize[j] = reader->GetDimensions(j);
- } else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
- }
- }
- if (IsOk)
- vector.push_back(files[i].toStdString());
- }
- }
- if (vector.size() > 0)
- LoadImages(vector, vvImageReader::MERGED);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SliceImages()
-{
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
-
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
- mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
- std::vector<std::string> vector;
- for (int i = 0; i < files.size(); i++)
- vector.push_back(files[i].toStdString());
- LoadImages(vector, vvImageReader::SLICED);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::MergeImagesWithTime()
-{
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
- mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
- std::vector<std::string> vector;
-
- for (int i = 0; i < files.size(); i++)
- vector.push_back(files[i].toStdString());
- sort(vector.begin(),vector.end());
- if (vector.size() > 1)
- LoadImages(vector, vvImageReader::MERGEDWITHTIME);
- else
- QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenDicom()
-{
- std::vector<std::string> files;
-
- std::cout << "dicomSeriesSelector " << std::endl;
- if (dicomSeriesSelector->exec() == QDialog::Accepted) {
- files = *(dicomSeriesSelector->GetFilenames());
- LoadImages(files, vvImageReader::DICOM);
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenImages()
-{
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
-
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
- mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
- std::vector<std::string> vector;
- for (int i = 0; i < files.size(); i++)
- vector.push_back(files[i].toStdString());
- LoadImages(vector, vvImageReader::IMAGE);
-}
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenRecentImage()
-{
- QAction * caller = qobject_cast<QAction*>(sender());
- std::vector<std::string> images;
- images.push_back(caller->text().toStdString());
- mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
- LoadImages(images, vvImageReader::IMAGE);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenImageWithTime()
-{
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
-
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
- mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
- std::vector<std::string> vector;
- for (int i = 0; i < files.size(); i++) {
- vector.push_back(files[i].toStdString());
- }
- LoadImages(vector, vvImageReader::IMAGEWITHTIME);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
-{
- //Separate the way to open images and dicoms
- int fileSize;
- if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
- fileSize = files.size();
- else
- fileSize = 1;
-
- // For SLICED, we need the number of slices (ndim and #slices)
- std::vector<unsigned int> nSlices;
- nSlices.resize(files.size());
- std::fill(nSlices.begin(), nSlices.end(), 1);
- if (filetype == vvImageReader::SLICED) {
- for (int i = 0; i < fileSize; i++) {
- itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- if (!header) {
- nSlices[i] = 0;
- QString error = "Cannot open file \n";
- error += files[i].c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- return;
- }
- if (header->GetNumberOfDimensions() < 3) {
- nSlices[i] = 0;
- QString error = "Dimension problem. Cannot slice \n";
- error += files[i].c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- return;
- }
- nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
- }
- }
-
- //Only add to the list of recently opened files when a single file is opened,
- //to avoid polluting the list of recently opened files
- if (files.size() == 1) {
- QFileInfo finfo=tr(files[0].c_str());
- AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
- updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
- }
- //init the progress events
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + files[0],fileSize>1);
- qApp->processEvents();
-
- int numberofsuccesulreads=0;
- //open images as 1 or multiples
- for (int i = 0; i < fileSize; i++) {
-
- progress.SetText("Opening " + files[i]);
- progress.SetProgress(i,fileSize);
- qApp->processEvents();
-
- for (unsigned int j = 0; j < nSlices[i]; j++) {
- //read the image and put it in mSlicerManagers
- vvSlicerManager* imageManager = new vvSlicerManager(4);
- qApp->processEvents();
-
- bool SetImageSucceed=false;
-
- // Change filename if an image with the same already exist
- int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
-
- if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
- SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
- else {
- SetImageSucceed = imageManager->SetImages(files,filetype, number);
- }
- if (!SetImageSucceed) {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot open file \n";
- error += imageManager->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete imageManager;
- } else {
- mSlicerManagers.push_back(imageManager);
-
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,files[i].c_str());
- QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setData(1,Qt::UserRole,tr("image"));
- item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
- qApp->processEvents();
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->addTopLevelItem(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = QDir::current().absoluteFilePath(files[i].c_str()) + QString::number(mSlicerManagers.size()-1);
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- mSlicerManagers.back()->SetId(id.toStdString());
-
- linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
-
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
- // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
- this,SLOT(WindowLevelChanged()));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(ImageInfoChanged()));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
- connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
- connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- InitSlicers();
- numberofsuccesulreads++;
- }
- }
- }
- if (numberofsuccesulreads) {
- NOViewWidget->show();
- NEViewWidget->show();
- SOViewWidget->show();
- SEViewWidget->show();
- UpdateTree();
- InitDisplay();
- ShowLastImage();
-
- // Try to guess default WindowLevel
- double range[2];
- mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
- if ((range[0] == 0) && (range[1] == 1)) {
- presetComboBox->setCurrentIndex(5);// binary
- } else {
- // TODO
- }
- }
- QApplication::restoreOverrideCursor();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateTree()
-{
- DataTree->resizeColumnToContents(COLUMN_TREE);
- DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
- DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
- DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
- DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
- DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
- DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
- DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::CurrentImageChanged(std::string id)
-{
- if (id == mCurrentSelectedImageId) return; // Do nothing
- int selected = 0;
- for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
- selected = i;
- } else {
- DataTree->topLevelItem(i)->setSelected(0);
- }
- for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
- DataTree->topLevelItem(i)->child(child)->setSelected(0);
-
- }
- DataTree->topLevelItem(selected)->setSelected(1);
- mCurrentSelectedImageId = id;
- emit SelectedImageHasChanged(mSlicerManagers[selected]);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::CurrentPickedImageChanged(std::string id)
-{
- if (id == mCurrentPickedImageId) return; // Do nothing
- int selected = 0;
- for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
- selected = i;
- } else {
- DataTree->topLevelItem(i)->setSelected(0);
- }
- for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
- DataTree->topLevelItem(i)->child(child)->setSelected(0);
-
- }
- DataTree->topLevelItem(selected)->setSelected(1);
- mCurrentPickedImageId = id;
- mCurrentPickedImageIndex = selected;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ImageInfoChanged()
-{
- contextActions[6]->setEnabled(1);
- contextActions[5]->setEnabled(1);
- actionSave_As->setEnabled(1);
- actionAdd_VF_to_current_Image->setEnabled(1);
- actionAdd_fusion_image->setEnabled(1);
- actionAdd_overlay_image_to_current_image->setEnabled(1);
- actionAdd_USSequence_toCT->setEnabled(1);
- actionNorth_East_Window->setEnabled(1);
- actionNorth_West_Window->setEnabled(1);
- actionSouth_East_Window->setEnabled(1);
- actionSouth_West_Window->setEnabled(1);
- vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
- inverseButton->setEnabled(1);
-
- goToCursorPushButton->setEnabled(1);
-
- if (DataTree->selectedItems().size()) {
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-
- colorMapComboBox->setEnabled(1);
- for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
- if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
- colorMapComboBox->setEnabled(0);
- break;
- }
- }
-
- std::vector<double> origin;
- std::vector<double> inputSpacing;
- std::vector<int> inputSize;
- std::vector<double> sizeMM;
- vtkSmartPointer<vtkMatrix4x4> transformation;
- int dimension=0;
- QString pixelType;
- QString inputSizeInBytes;
- QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
-
- int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
-
- if (nframes > 1 || playMode == 1) {
- playButton->setEnabled(1);
- frameRateLabel->setEnabled(1);
- frameRateSpinBox->setEnabled(1);
- } else {
- playButton->setEnabled(0);
- frameRateLabel->setEnabled(0);
- frameRateSpinBox->setEnabled(0);
- }
-
- //read image header
- int NPixel = 1;
-
- int tSlice = 0;
- vvImage::Pointer imageSelected;
- if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
- } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
- } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
- } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
- }
- else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
- }
- else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
- }
- else {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
- tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
- }
-
- dimension = imageSelected->GetNumberOfDimensions();
- origin.resize(dimension);
- inputSpacing.resize(dimension);
- inputSize.resize(dimension);
- sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
- for (int i = 0; i < dimension; i++) {
- origin[i] = imageSelected->GetOrigin()[i];
- inputSpacing[i] = imageSelected->GetSpacing()[i];
- inputSize[i] = imageSelected->GetSize()[i];
- sizeMM[i] = inputSize[i]*inputSpacing[i];
- NPixel *= inputSize[i];
- }
- inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
-
- QString dim = QString::number(dimension) + " (";
- dim += pixelType + ")";
-
- infoPanel->setFileName(image);
- infoPanel->setDimension(dim);
- infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
- infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
- infoPanel->setOrigin(GetVectorDoubleAsString(origin));
- infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
- infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
-
- transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
- infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
-
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
- landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
- landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
-
- overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
- for (int i = 0; i < 4; i++) {
- if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
- mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
- break;
- }
- }
-
- infoPanel->setFileName(image);
- infoPanel->setDimension(dim);
- infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
- infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
- infoPanel->setOrigin(GetVectorDoubleAsString(origin));
- infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
- infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
-
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
- landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
- landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
-
- overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
- for (int i = 0; i < 4; i++) {
- if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
- mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
- break;
- }
- }
- WindowLevelChanged();
-
- slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
-
- if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
- overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
- overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
- } else {
- overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
- overlayPanel->getVFProperty(-1,-1,-1);
- }
- if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
- overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
- } else {
- overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
- }
-
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
- } else {
- overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ShowDocumentation()
-{
- documentation->show();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::PopupRegisterForm(bool checkCanPush)
-{
- vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
- if(!checkCanPush) {
- registerForm->show();
- } else {
- if(registerForm->canPush()) {
- registerForm->show();
- registerForm->acquitPushed();//too bad if there is not internet connection anymore.
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ShowHelpDialog()
-{
- help_dialog->show();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ChangeViewMode()
-{
- typedef struct _SIZE{
- QSplitter* splitter;
- QList<int> size1, size2;
- int cols[3];
- }SplitterSize;
- SplitterSize sizes[4];
- sizes[0].splitter = OSplitter;
- sizes[0].size1.push_back(1);
- sizes[0].size1.push_back(0);
- sizes[0].size2.push_back(1);
- sizes[0].size2.push_back(0);
- sizes[0].cols[0] = 2;
- sizes[0].cols[1] = 3;
- sizes[0].cols[2] = 4;
-
- sizes[1].splitter = ESplitter;
- sizes[1].size1.push_back(0);
- sizes[1].size1.push_back(1);
- sizes[1].size2.push_back(1);
- sizes[1].size2.push_back(0);
- sizes[1].cols[0] = 1;
- sizes[1].cols[1] = 3;
- sizes[1].cols[2] = 4;
-
- sizes[2].splitter = OSplitter;
- sizes[2].size1.push_back(1);
- sizes[2].size1.push_back(0);
- sizes[2].size2.push_back(0);
- sizes[2].size2.push_back(1);
- sizes[2].cols[0] = 1;
- sizes[2].cols[1] = 2;
- sizes[2].cols[2] = 4;
-
- sizes[3].splitter = ESplitter;
- sizes[3].size1.push_back(0);
- sizes[3].size1.push_back(1);
- sizes[3].size2.push_back(0);
- sizes[3].size2.push_back(1);
- sizes[3].cols[0] = 1;
- sizes[3].cols[1] = 2;
- sizes[3].cols[2] = 3;
-
- int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
- if (viewMode == 1) {
- if (slicer >= 0) {
- viewMode = 0;
- splitter_3->setSizes(sizes[slicer].size1);
- sizes[slicer].splitter->setSizes(sizes[slicer].size2);
- DataTree->setColumnHidden(sizes[slicer].cols[0],1);
- DataTree->setColumnHidden(sizes[slicer].cols[1],1);
- DataTree->setColumnHidden(sizes[slicer].cols[2],1);
- }
- } else {
- QList<int> size;
- if (slicer >= 0) {
- viewMode = 1;
- size.push_back(1);
- size.push_back(1);
- splitter_3->setSizes(size);
- sizes[slicer].splitter->setSizes(size);
- DataTree->setColumnHidden(sizes[slicer].cols[0],0);
- DataTree->setColumnHidden(sizes[slicer].cols[1],0);
- DataTree->setColumnHidden(sizes[slicer].cols[2],0);
- }
- }
- UpdateRenderWindows();
- /*
- ** I don't know why but for both resized QVTKWidget we also need to render
- ** the associated Slicer to redraw crosses.
- */
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
-// if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(0)->Render();
- mSlicerManagers[i]->GetSlicer(1)->Render();
-// if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(2)->Render();
- mSlicerManagers[i]->GetSlicer(3)->Render();
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-QString vvMainWindow::GetSizeInBytes(unsigned long size)
-{
- QString result = "";// QString::number(size);
- //result += " bytes (";
- if (size > 1000000000) {
- size /= 1000000000;
- result += QString::number(size);
- result += "Gb";//)";
- } else if (size > 1000000) {
- size /= 1000000;
- result += QString::number(size);
- result += "Mb";//)";
- } else if (size > 1000) {
- size /= 1000;
- result += QString::number(size);
- result += "kb";//)";
- }
- return result;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix, const int precision)
-{
- std::ostringstream strmatrix;
-
- // Figure out the number of digits of the integer part of the largest absolute value
- // for each column
- unsigned width[4];
- for (unsigned int j = 0; j < 4; j++){
- double absmax = 0.;
- for (unsigned int i = 0; i < 4; i++)
- absmax = std::max(absmax, vnl_math_abs(matrix->GetElement(i, j)));
- unsigned ndigits = (unsigned)std::max(0.,std::log10(absmax))+1;
- width[j] = precision+ndigits+3;
- }
-
- // Output with correct width, aligned to the right
- for (unsigned int i = 0; i < 4; i++) {
- for (unsigned int j = 0; j < 4; j++) {
- strmatrix.setf(ios::fixed,ios::floatfield);
- strmatrix.precision(precision);
- strmatrix.fill(' ');
- strmatrix.width(width[j]);
- strmatrix << std::right << matrix->GetElement(i, j);
- }
- strmatrix << std::endl;
- }
- QString result = strmatrix.str().c_str();
- return result;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
-{
- QString result;
- for (unsigned int i= 0; i < vectorDouble.size(); i++) {
- if (i != 0)
- result += " ";
- result += QString::number(vectorDouble[i]);
- }
- return result;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
-{
- QString result;
- for (unsigned int i= 0; i < vectorInt.size(); i++) {
- if (i != 0)
- result += " ";
- result += QString::number(vectorInt[i]);
- }
- return result;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
-{
- QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
- return i;
- }
- return -1;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
-{
- QString id = sm->GetId().c_str();
- for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
- return DataTree->topLevelItem(i);
- }
- return NULL;
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
-{
- if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
- return;
-
- // Get parent information (might be the same item)
- int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
- QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
- vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
-
- // Go over the complete item tree (only 2 levels, parents and children)
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- // Trick to avoid redoing twice the job for a key (sr)
- mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
-
- QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
- if(currentParentItem != clickedParentItem) {
- // Not the branch of the clicked item, uncheck all
-
- // Parent
- currentParentItem->setData(column,Qt::CheckStateRole, 0);
- mSlicerManagers[i]->UpdateSlicer(column-1, false);
-
- // Children
- for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
- currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
- }
- }
- else {
- // Branch of the clicked one: get check status from actor visibility in slicer
- // and toggle the clicked one
-
- // Parent
- bool vis = clickedSlicer->GetActorVisibility("image", 0);
- bool draw = clickedSlicer->GetRenderer()->GetDraw();
-
- // Update slicer (after getting visibility)
- mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
- mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
- DisplaySliders(slicerManagerIndex, column-1);
- if(clickedParentItem == clickedItem) {
- // Toggle
- vis = !draw || !vis;
- }
- clickedSlicer->SetActorVisibility("image", 0, vis);
- clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
-
- // Children
- std::map<std::string, int> actorTypeCounts;
- for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
- QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
- std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
- vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
- if(currentChildItem == clickedItem) {
- // Toggle or force visibility if it was not on this branch so far
- vis = !draw || !vis;
- clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
- }
- currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
- actorTypeCounts[actorType]++;
- }
- }
- }
-
- clickedSlicer->Render();
-}
-//------------------------------------------------------------------------------
-
-void vvMainWindow::InitSlicers()
-{
- if (mSlicerManagers.size()) {
- mSlicerManagers.back()->GenerateDefaultLookupTable();
-
- mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
- mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
- mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
- mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
- }
-}
-
-//------------------------------------------------------------------------------
-void vvMainWindow::InitDisplay()
-{
- if (mSlicerManagers.size()) {
- //BE CAREFUL : this is absolutely necessary to set the interactor style
- //in order to have the same style instanciation for all SlicerManagers in
- // a same window
- for (int j = 0; j < 4; j++) {
- vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
- style->SetAutoAdjustCameraClippingRange(1);
- bool AlreadySelected = false;
- for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
- mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
-
- //select the image only if previous are not selected
- if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
- mSlicerManagers[i]->UpdateSlicer(j,1);
- AlreadySelected = true;
- } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
- if (DataTree->selectedItems().size() == 0)
- DataTree->topLevelItem(i)->setSelected(1);
- DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
- mSlicerManagers[i]->UpdateSlicer(j,1);
- DisplaySliders(i,j);
- } else {
- DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
- mSlicerManagers[i]->UpdateSlicer(j,0);
- }
- }
- style->Delete();
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::DisplaySliders(int slicer, int window)
-{
- if(!mSlicerManagers[slicer]->GetSlicer(window)->GetRenderer()->GetDraw())
- return;
-
- int range[2];
- mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
- int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
- if (range[1]>0)
- verticalSliders[window]->show();
- else
- verticalSliders[window]->hide();
- verticalSliders[window]->setRange(range[0],range[1]);
- verticalSliders[window]->setValue(position);
-
- int tRange[2];
- tRange[0] = 0;
- tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
- if (tRange[1]>0)
- horizontalSliders[window]->show();
- else
- horizontalSliders[window]->hide();
- horizontalSliders[window]->setRange(tRange[0],tRange[1]);
- int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetMaxCurrentTSlice();
- horizontalSliders[window]->setValue(tPosition);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
-{
- int index = GetSlicerIndexFromItem(item);
-
- if (DataTree->topLevelItem(index) != item) {
- QString warning = "Do you really want to close the overlay : ";
- warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
- warning, 0, this);
- msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole) {
- std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
- int overlay_index=0;
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
- if (DataTree->topLevelItem(index)->\
- child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
- overlay_index++;
- if (DataTree->topLevelItem(index)->child(child) == item) break;
- }
- mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
- mSlicerManagers[index]->SetColorMap(0);
- DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
- mSlicerManagers[index]->Render();
- }
- } else if (DataTree->topLevelItemCount() <= 1) {
- QString warning = "Do you really want to close the image : ";
- warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- warning += "\nThis is the last image, you're about to close vv !!!";
- QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
- msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole) {
- this->close();
- }
- } else {
- QString warning = "Do you really want to close the image : ";
- warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
- msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole) {
-
- // Tell tools that we close an image
- emit AnImageIsBeingClosed(mSlicerManagers[index]);
-
- std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
- DataTree->takeTopLevelItem(index);
- for (int i = 0; i < index; i++) {
- Manageriter++;
- }
- linkPanel->removeImage(index);
- mSlicerManagers[index]->RemoveActors();
- delete mSlicerManagers[index];
- mSlicerManagers.erase(Manageriter);
-
- //
- InitDisplay();
- }
- }
- ImageInfoChanged();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
-{
- // int index = GetSlicerIndexFromItem(item);
- // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- // if (item->data(1,Qt::UserRole).toString() == "vector")
- // mSlicerManagers[index]->ReloadVF();
- // else
- // mSlicerManagers[index]->Reload();
-
- // QApplication::restoreOverrideCursor();
- int index = GetSlicerIndexFromItem(item);
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- QString role=item->data(1,Qt::UserRole).toString();
- if ( role == "vector"){
- mSlicerManagers[index]->ReloadVF();
- }
- else if (role == "overlay"){
- mSlicerManagers[index]->ReloadOverlay();
- }
- else if (role == "fusion"){
- mSlicerManagers[index]->ReloadFusion();
- }
- else if (role == "fusionSequence"){
- mSlicerManagers[index]->ReloadFusionSequence(); //same as for standard fusion
- }
- else{
- mSlicerManagers[index]->Reload();
- }
- // Update view and info
- ImageInfoChanged();
- mSlicerManagers[index]->Render();
- QApplication::restoreOverrideCursor();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
-{
- infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
-{
- overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
-{
- overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::FusionChanged(int visibility, double value)
-{
- overlayPanel->getCurrentFusionInfo(visibility,value);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::WindowLevelChanged()
-{
- // Base image
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- if(index==-1) return;
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
- presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
-
- // Overlay image
- if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
- overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
- mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
- mSlicerManagers[index]->GetOverlayColorWindow(),
- mSlicerManagers[index]->GetOverlayColorLevel());
- else
- overlayPanel->getOverlayProperty(-1,0,0.,0.);
-
- // Fusion & SequenceFusion image
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[index]->GetFusionThresholdOpacity(),
- mSlicerManagers[index]->GetFusionColorMap(),
- mSlicerManagers[index]->GetFusionWindow(),
- mSlicerManagers[index]->GetFusionLevel());
- overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
- mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
- mSlicerManagers[index]->GetFusionSequenceNbFrames());
- }
- else if ( mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
- //if the image is involved in a fusion sequence, preserve the overlay panel!
- int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
- overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[ind]->GetFusionThresholdOpacity(),
- mSlicerManagers[ind]->GetFusionColorMap(),
- mSlicerManagers[ind]->GetFusionWindow(),
- mSlicerManagers[ind]->GetFusionLevel());
- overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
- mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
- mSlicerManagers[ind]->GetFusionSequenceNbFrames());
- }
- else
- {
- overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
- overlayPanel->getFusionSequenceProperty(-1, false, 0);
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::WindowLevelEdited()
-{
- presetComboBox->setCurrentIndex(6);
- UpdateWindowLevel();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SetWindowLevel(double w, double l)
-{
- windowSpinBox->setValue(w);
- levelSpinBox->setValue(l);
- presetComboBox->setCurrentIndex(6);
- colorMapComboBox->setCurrentIndex(0);
- UpdateWindowLevel();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateWindowLevel()
-{
- if (DataTree->selectedItems().size()) {
- if (presetComboBox->currentIndex() == 7) //For ventilation
- colorMapComboBox->setCurrentIndex(5);
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
- mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
- mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
- mSlicerManagers[index]->Render();
- WindowLevelChanged();
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateSlicingPreset()
-{
- if (DataTree->selectedItems().size()) {
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateColorMap()
-{
- if (DataTree->selectedItems().size()) {
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
- mSlicerManagers[index]->Render();
- }
-}
-//------------------------------------------------------------------------------
-void vvMainWindow::SwitchWindowLevel()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- int window = mSlicerManagers[index]->GetColorWindow();
- presetComboBox->setCurrentIndex(6);
- windowSpinBox->setValue(-window);
- UpdateWindowLevel();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ApplyWindowLevelToAllImages()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- if(index==-1) return;
- double window = mSlicerManagers[index]->GetColorWindow();
- double level = mSlicerManagers[index]->GetColorLevel();
-
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i] == NULL)
- continue;
- mSlicerManagers[i]->SetColorWindow(window);
- mSlicerManagers[i]->SetColorLevel(level);
- mSlicerManagers[i]->SetPreset(6);
- mSlicerManagers[i]->Render();
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ApplyWindowToSetOfImages(double window, unsigned int indexMin, unsigned int indexMax)
-{
- for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i] == NULL)
- continue;
- mSlicerManagers[i]->SetColorWindow(window);
- mSlicerManagers[i]->SetPreset(6);
- mSlicerManagers[i]->Render();
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ApplyLevelToSetOfImages(double level, unsigned int indexMin, unsigned int indexMax)
-{
- for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i] == NULL)
- continue;
- mSlicerManagers[i]->SetColorLevel(level);
- mSlicerManagers[i]->SetPreset(6);
- mSlicerManagers[i]->Render();
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
-{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i]->GetId() == id) {
- //mSlicerManagers[i]->SetTSlice(temps);
- if (temps<0) { //for fusionSequence, special input used to avoid any automatic time synchronization...
- mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition( x,y,z, mSlicerManagers[i]->GetSlicer(slicer)->GetTSlice() );
- }
- else mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
- mSlicerManagers[i]->UpdateViews(0,slicer);
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
-{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (id == mSlicerManagers[i]->GetId()) {
- mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ShowContextMenu(QPoint point)
-{
- if (!DataTree->selectedItems().size()) {
- contextActions[1]->setEnabled(0);
- contextActions[2]->setEnabled(0);
- contextActions[3]->setEnabled(0);
- contextActions[4]->setEnabled(0);
- contextActions[5]->setEnabled(0);
- contextActions[6]->setEnabled(0);
- } else {
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- contextActions[1]->setEnabled(1);
- contextActions[2]->setEnabled(
- DataTree->itemWidget(DataTree->selectedItems()[0],
- COLUMN_RELOAD_IMAGE)->isEnabled());
- contextActions[3]->setEnabled(1);
- contextActions[5]->setEnabled(1);
- contextActions[6]->setEnabled(1);
-
- if (mSlicerManagers[index]->GetDimension() < 3)
- contextActions[4]->setEnabled(0);
- else
- contextActions[4]->setEnabled(1);
- }
- contextMenu.exec(QCursor::pos());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::CloseImage()
-{
- CloseImage(DataTree->selectedItems()[0],0);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ReloadImage()
-{
- ReloadImage(DataTree->selectedItems()[0],0);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SelectOverlayImage()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-
- //check if one overlay image is added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
- QString error = "Cannot add more than one compared image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding compared image !"),error);
- return;
- }
-
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
-
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
- AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddOverlayImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
-{
- QString file(fileNames[0].c_str());
- if (QFile::exists(file))
- {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(fileNames[0].c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- int dimension = reader->GetNumberOfDimensions();
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + file.toStdString());
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetOverlay(fileNames,dimension, component,type)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("overlay"));
- QFileInfo fileinfo(file); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
- qApp->processEvents();
-
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
-
- // Update the display to update, e.g., the sliders
- for(int i=0; i<4; i++)
- DisplaySliders(index, i);
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
- WindowLevelChanged();
- }
- else
- QMessageBox::information(this,tr("Problem reading Overlay !"),"File doesn't exist!");
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddROI(int index, QString file)
-{
- /*
- // Get slice manager
-
- // Load image
-
- vvImageReader * mReader = new vvImageReader;
- mReader->SetInputFilename(filename.toStdString());
- mReader->Update(IMAGE);
- if (mReader->GetLastError().size() != 0) {
- std::cerr << "Error while reading " << filename.toStdString() << std::endl;
- QString error = "Cannot open file \n";
- error += mReader->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete mReader;
- return;
- }
- vvImage::Pointer roi = mReader->GetOutput();
-
- // Create roi in new tool
- vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
- */
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SelectFusionImage()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-
- //check if one fusion image is added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
- (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
- QString error = "Cannot add more than one fusion image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding fusion image !"),error);
- return;
- }
-
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddFusionImage(index,file);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ResetTransformationToIdentity()
-{
- std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
- ImageInfoChanged();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionImage(int index, QString file)
-{
- if (QFile::exists(file))
- {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- if (reader) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening fusion");
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusion"));
- QFileInfo fileinfo(filename.c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
- qApp->processEvents();
-
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
- } else {
- QString error = "Cannot import the new image.\n";
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
- }
- else
- QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::OpenField()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if a vector field has already been added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
- QString error = "Cannot add more than one vector field\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding vector field!"),error);
- return;
- }
-
- QString Extensions = "Images ( *.mhd)";
- Extensions += ";;Images ( *.mha)";
- Extensions += ";;VF Images ( *.vf)";
- Extensions += ";;nii Images ( *.nii)";
- Extensions += ";;nrrd Images ( *.nrrd)";
- Extensions += ";;nhdr Images ( *.nhdr)";
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddField(file,index);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
-{
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,filename.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("vector"));
- QFileInfo fileinfo(filename); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
- qApp->processEvents();
-
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close vector field"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload vector field"));
- rButton->setEnabled(from_disk);
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
-{
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvSlicerManager* imageManager = mSlicerManagers[index];
- if (imageManager->SetVF(vf,file.toStdString())) {
- AddFieldEntry(file,index,false);
- } else {
- QString error = "Cannot import the vector field for this image.\n";
- error += imageManager->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading VF !"),error);
- }
- QApplication::restoreOverrideCursor();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddField(QString file,int index)
-{
- if (QFile::exists(file)) {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
-
- //init the progress events
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + file.toStdString());
- qApp->processEvents();
-
- //read the vector and put it in the current mSlicerManager
- vvSlicerManager* imageManager = mSlicerManagers[index];
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (imageManager->SetVF(file.toStdString())) {
- imageManager->Render();
- AddFieldEntry(file,index,true);
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the vector field for this image.\n";
- error += imageManager->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading VF !"),error);
- }
- } else
- QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
-
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
- for (int i = 0; i < 4; i++) {
- mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
- mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
- mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
- mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
- if (log > 0)
- mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
- else
- mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
- }
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
- mSlicerManagers[index]->SetOverlayColor(color);
- mSlicerManagers[index]->SetColorMap(0);
- mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
- mSlicerManagers[index]->SetOverlayColorWindow(window);
- mSlicerManagers[index]->SetOverlayColorLevel(level);
- mSlicerManagers[index]->Render();
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level, bool showLegend)
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- mSlicerManagers[index]->SetFusionColorMap(colormap);
- mSlicerManagers[index]->SetFusionOpacity(opacity);
- mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
- mSlicerManagers[index]->SetFusionWindow(window);
- mSlicerManagers[index]->SetFusionLevel(level);
- mSlicerManagers[index]->SetFusionShowLegend(showLegend);
- mSlicerManagers[index]->SetColorMap(0);
- mSlicerManagers[index]->Render();
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SelectFusionSequence()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if one overlay image is added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
- (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
- QString error = "Cannot add more than one compared image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding compared image !"),error);
- return;
- }
-
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
-
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
-
- AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
-{
- QString file(fileNames[0].c_str());
- if (QFile::exists(file))
- {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(fileNames[0].c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- int dimension = reader->GetNumberOfDimensions();
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + file.toStdString());
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
-
- if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusionSequence"));
-
- QFileInfo fileinfo(file); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
- qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //store the original transform matrix
- int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
- mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
-
- ImageInfoChanged();
-
- QApplication::restoreOverrideCursor();
- // Update the display to update, e.g., the sliders
- for(int i=0; i<4; i++)
- DisplaySliders(index, i);
-
-
- //TEST: also add the image as normal image, link it, and store its index in the SlicerManagersArray for tying it to the fusionSequence
- LoadImages(fileNames, type);
- //reset the transforms to identiy
- for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
- mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
- mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
- }
-
- //automatically link both images...
- AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
-
- //store the index ; this is also used as a flag to indicate that the images are involved in a fusionSequence...
- //TODO: reset these when exiting the visualization mode (unloading one of the images)
- mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
- mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
-
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
- WindowLevelChanged();
- }
- else {
- QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
- return;
- }
-
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames)
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-
- //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
- if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
- index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
- }
-
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
-
- //if the button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
- if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
- for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
- }
-
- for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
- mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
- mSlicerManagers[indexParent]->GetSlicer(i)->Render();
- }
- }
-
- //update the property values in the slicer manager
- mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
- mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
- mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
-
- //show the right frame of the US sequence
- mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex);
- //update the linked sequence if possible
- if (mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>0) {
- mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetTSlice(fusionSequenceFrameIndex, false);
- }
-
- if (spatialSyncFlag) { //reslice the CT
-
- //Set the transform matrix of the parent sequence (typically CT / 4DCT)
- vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
- vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
- for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
- mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
- }
-
- for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
- mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
- mSlicerManagers[indexParent]->GetSlicer(i)->Render();
- }
- }
-
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveAs()
-{
- if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
- QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
- return;
- }
-
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- int dimension = mSlicerManagers[index]->GetDimension();
- QStringList OutputListeFormat;
- OutputListeFormat.clear();
- if (dimension == 1) {
- OutputListeFormat.push_back(".mhd");
- OutputListeFormat.push_back(".mha");
- }
- if (dimension == 2) {
- OutputListeFormat.push_back(".bmp");
- OutputListeFormat.push_back(".png");
- OutputListeFormat.push_back(".jpeg");
- OutputListeFormat.push_back(".tif");
- OutputListeFormat.push_back(".mhd");
- OutputListeFormat.push_back(".mha");
- OutputListeFormat.push_back(".hdr");
- OutputListeFormat.push_back(".vox");
- } else if (dimension == 3) {
- OutputListeFormat.push_back(".mhd");
- OutputListeFormat.push_back(".mha");
- OutputListeFormat.push_back(".nii");
- OutputListeFormat.push_back(".nrrd");
- OutputListeFormat.push_back(".nhdr");
- OutputListeFormat.push_back(".hdr");
- OutputListeFormat.push_back(".vox");
- } else if (dimension == 4) {
- OutputListeFormat.push_back(".mhd");
- OutputListeFormat.push_back(".mha");
- OutputListeFormat.push_back(".nii");
- OutputListeFormat.push_back(".nrrd");
- OutputListeFormat.push_back(".nhdr");
- }
- QString Extensions = "AllFiles(*.*)";
- for (int i = 0; i < OutputListeFormat.count(); i++) {
- Extensions += ";;Images ( *";
- Extensions += OutputListeFormat[i];
- Extensions += ")";
- }
- QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- mSlicerManagers[index]->GetFileName().c_str(),
- Extensions);
- if (!fileName.isEmpty()) {
- std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
- if (OutputListeFormat.contains(
- fileformat.c_str())) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- std::string action = "Saving";
- vvProgressDialog progress("Saving "+fileName.toStdString());
- qApp->processEvents();
- vvImageWriter::Pointer writer = vvImageWriter::New();
- writer->SetOutputFileName(fileName.toStdString());
- writer->SetInput(mSlicerManagers[index]->GetImage());
-
- // Check on transform and prompt user
- writer->SetSaveTransform(false);
- bool bId = true;
- for(int i=0; i<4; i++)
- for(int j=0; j<4; j++) {
- // TODO SR and BP: check on the list of transforms and not the first only
- double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
- if(i==j && elt!=1.)
- bId = false;
- if(i!=j && elt!=0.)
- bId = false;
- }
- if( !bId ) {
- QString warning = "The image has an associated linear transform. Do you want to save it along?";
- QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
- msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("No"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole)
- writer->SetSaveTransform(true);
- }
-
- writer->Update();
- QApplication::restoreOverrideCursor();
- if (writer->GetLastError().size()) {
- QString error = "Saving did not succeed\n";
- error += writer->GetLastError().c_str();
- QMessageBox::information(this,tr("Saving Problem"),error);
- SaveAs();
- }
- } else {
- QString error = fileformat.c_str();
- if (error.isEmpty())
- error += "no file format specified !";
- else
- error += " format unknown !!!\n";
- QMessageBox::information(this,tr("Saving Problem"),error);
- SaveAs();
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveCurrentState()
-{
- QString Extensions = "XML Files(*.xml)";
- QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save Current Window State"),
- "",
- Extensions);
-
- SaveCurrentStateAs(fileName.toStdString());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
-{
- vvSaveState save_state;
- save_state.Run(this, stateFile);
-}
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ReadSavedState()
-{
- QString Extensions = "XML Files(*.xml)";
- QString fileName = QFileDialog::getOpenFileName(this,
- tr("Load Window State"),
- "",
- Extensions);
-
- ReadSavedStateFile(fileName.toStdString());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
-{
- vvReadState read_state;
- read_state.Run(this, stateFile);
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::LinkAllImages()
-{
- linkPanel->linkAll();
-}
-
-//------------------------------------------------------------------------------
-void vvMainWindow::AddLink(QString image1,QString image2,bool fromPanel)
-{
- if (!fromPanel) {
- // delegate to linkPanel if call came from elsewhere...
- linkPanel->addLinkFromIds(image1, image2);
- return;
- }
-
- unsigned int sm1 = 0;
- unsigned int sm2 = 0;
-
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
- mSlicerManagers[i]->AddLink(image2.toStdString());
- sm1 = i;
- }
- if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
- mSlicerManagers[i]->AddLink(image1.toStdString());
- sm2 = i;
- }
- }
-
- if (linkPanel->isLinkAll()) {
- emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
- emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
- } else {
- emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
- }
-}
-
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::RemoveLink(QString image1,QString image2)
-{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
- mSlicerManagers[i]->RemoveLink(image2.toStdString());
- }
- if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
- mSlicerManagers[i]->RemoveLink(image1.toStdString());
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
-{
- if(mSlicerManagers.size()==1)
- return;
-
- int index = 0;
- while(sm != mSlicerManagers[index])
- index++;
- index = (index+offset+mSlicerManagers.size()) % mSlicerManagers.size();
-
- QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
- item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
- CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
- DisplayChanged(item,slicer+1);
-}
-//------------------------------------------------------------------------------
-
-void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
-{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
- for (int j = 0; j < 4; j++) {
- mSlicerManagers[i]->SetTSliceInSlicer(value,j);
- //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
- //UpdateTSlice(j,value);
- }
- mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::NOHorizontalSliderMoved()
-{
- // if (mCurrentTime == NOHorizontalSlider->value()) return;
- HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
-// mCurrentTime = NOHorizontalSlider->value();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::NEHorizontalSliderMoved()
-{
- // if (mCurrentTime == NEHorizontalSlider->value()) return;
- HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
-// mCurrentTime = NEHorizontalSlider->value();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SOHorizontalSliderMoved()
-{
- // if (mCurrentTime == SOHorizontalSlider->value()) return;
- HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
- // mCurrentTime = SOHorizontalSlider->value();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SEHorizontalSliderMoved()
-{
- // if (mCurrentTime == SEHorizontalSlider->value()) return;
- HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
- // mCurrentTime = SEHorizontalSlider->value();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::NOVerticalSliderChanged()
-{
- static int value=-1;
- if (value == NOVerticalSlider->value()) return;
- else value = NOVerticalSlider->value();
- // int value = NOVerticalSlider->value();
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
- if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
- mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
- mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
-
- // If nor Update/Render -> slider not work
- // only render = ok navigation, but for contour Update needed but slower ?
-
- mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
- //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
- }
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::NEVerticalSliderChanged()
-{
- static int value=-1;
- if (value == NEVerticalSlider->value()) return;
- else value = NEVerticalSlider->value();
- // int value = NEVerticalSlider->value();
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
- if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
- mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
- mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
- mSlicerManagers[i]->UpdateSlice(1);
- //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
- }
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SOVerticalSliderChanged()
-{
- static int value=-1;
- if (value == SOVerticalSlider->value()) return;
- else value = SOVerticalSlider->value();
- //int value = SOVerticalSlider->value();
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
- if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
- mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
- mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
- mSlicerManagers[i]->UpdateSlice(2);
- //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
- }
- // else { DD("avoid SOVerticalSlider slicer update"); }
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SEVerticalSliderChanged()
-{
- static int value=-1;
- if (value == SEVerticalSlider->value()) return;
- else value = SEVerticalSlider->value();
- // int value = SEVerticalSlider->value();
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
- if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
- mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
- mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
- mSlicerManagers[i]->UpdateSlice(3);
- //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
- }
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateSlice(int slicer, int slice)
-{
- // DD("vvMainWindow::UpdateSlice");
-// DD(slicer);
-// DD(slice);
- if (slicer == 0) {
- // if (slice != NOVerticalSlider->value())
- NOVerticalSlider->setValue(slice);
- } else {
- if (slicer == 1)
- NEVerticalSlider->setValue(slice);
- else {
- if (slicer == 2)
- SOVerticalSlider->setValue(slice);
- else {
- if (slicer == 3)
- SEVerticalSlider->setValue(slice);
- }
- }
- }
- // DD("vvMainWindow:UpdateSlice END");
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateTSlice(int slicer, int slice)
-{
- switch (slicer) {
- case 0:
- NOHorizontalSlider->setValue(slice);
- break;
- case 1:
- NEHorizontalSlider->setValue(slice);
- break;
- case 2:
- SOHorizontalSlider->setValue(slice);
- break;
- case 3:
- SEHorizontalSlider->setValue(slice);
- break;
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
-{
- //int position = int((min+max)/2);
- int position = mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(slicer)->GetSlice();
- if (slicer == 0) {
- NOVerticalSlider->setRange(min,max);
- NOHorizontalSlider->setRange(tmin,tmax);
- NOVerticalSlider->setValue(position);
- } else if (slicer == 1) {
- NEVerticalSlider->setRange(min,max);
- NEHorizontalSlider->setRange(tmin,tmax);
- NEVerticalSlider->setValue(position);
- } else if (slicer == 2) {
- SOVerticalSlider->setRange(min,max);
- SOHorizontalSlider->setRange(tmin,tmax);
- SOVerticalSlider->setValue(position);
- } else if (slicer == 3) {
- SEVerticalSlider->setRange(min,max);
- SEHorizontalSlider->setRange(tmin,tmax);
- SEVerticalSlider->setValue(position);
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveNOScreenshot()
-{
- SaveScreenshot(NOViewWidget);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveNEScreenshot()
-{
- SaveScreenshot(NEViewWidget);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveSOScreenshot()
-{
- SaveScreenshot(SOViewWidget);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveSEScreenshot()
-{
- SaveScreenshot(SEViewWidget);
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveScreenshotAllSlices()
-{
- QVTKWidget *widget = NOViewWidget;
-
- int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- vvSlicerManager * SM = mSlicerManagers[index];
- vvImage * image = SM->GetImage();
- vvSlicer * slicer = SM->GetSlicer(0);
- int orientation = slicer->GetOrientation();
- int nbSlices = image->GetSize()[orientation];
- vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
-
- // Select filename base
- QString filename = QFileDialog::getSaveFileName(this,
- tr("Save As (filename will be completed by slice number)"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
- "Images( *.png);;Images( *.jpg)");
-
- // Loop on slices
- for(int i=0; i<nbSlices; i++) {
- // Change the slice
- slicer->SetSlice(i); // -> change the slice of the current slicer
- SM->UpdateSlice(0); // --> this one emit UpdateSlice
- QCoreApplication::flush(); // -> needed to force display of contours
-
- // Screenshot
- vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
- windowToImageFilter->SetInput(renderWindow);
- windowToImageFilter->SetMagnification(1);
- windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
- windowToImageFilter->Update();
-
- vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
- std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
- std::string num = clitk::toString(i);
- if (i<10) num = "0"+num;
- if (i<100) num = "0"+num;
- if (i<1000) num = "0"+num;
-
- fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
- + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
- writer->SetFileName(fn.c_str());
- writer->SetInput(windowToImageFilter->GetOutput());
- writer->Write();
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
-{
- QString Extensions = "Images( *.png);;";
- Extensions += "Images( *.jpg);;";
- Extensions += "Images( *.bmp);;";
- Extensions += "Images( *.tif);;";
- Extensions += "Images( *.ppm)";
-#if defined(VTK_USE_FFMPEG_ENCODER) || defined(VTK_USE_VIDEO_FOR_WINDOWS)
- Extensions += ";;Video( *.avi)";
-#endif
-#ifdef VTK_USE_MPEG2_ENCODER
- Extensions += ";;Video( *.mpg)";
-#endif
-#ifdef CLITK_EXPERIMENTAL
- Extensions += ";;Video( *.gif)";
-#endif
-
- int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
- Extensions);
-
- if (!fileName.isEmpty()) {
- vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
- w2i->SetInput(widget->GetRenderWindow());
- w2i->Update();
- vtkImageData *image = w2i->GetOutput();
-
- std::string ext(itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString()));
-
- // Image
- vtkImageWriter *imgwriter = NULL;
- if (ext==".bmp")
- imgwriter = vtkBMPWriter::New();
- else if (ext==".tif")
- imgwriter = vtkTIFFWriter::New();
- else if (ext==".ppm")
- imgwriter = vtkPNMWriter::New();
- else if (ext==".png")
- imgwriter = vtkPNGWriter::New();
- else if (ext==".jpg")
- imgwriter = vtkJPEGWriter::New();
-
- // Snapshot image if not null
- if(imgwriter!=NULL) {
- imgwriter->SetInput(image);
- imgwriter->SetFileName(fileName.toStdString().c_str());
- imgwriter->Write();
- return;
- }
-
- // Video
- vtkGenericMovieWriter *vidwriter = NULL;
-#if CLITK_EXPERIMENTAL == 1
- if (ext==".gif") {
- vvAnimatedGIFWriter *gif = vvAnimatedGIFWriter::New();
- vidwriter = gif;
-
- // FPS
- bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1000, 1, &ok);
- if(ok)
- gif->SetRate(fps);
-
- // Loops
- int loops = QInputDialog::getInteger(this, tr("Loops"),
- tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
- if(ok)
- gif->SetLoops(loops);
-
- // Dithering
- QString msg = "Would you like to activate dithering?";
- QMessageBox msgBox(QMessageBox::Question, tr("Dithering"),msg, 0, this);
- msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("No"), QMessageBox::RejectRole);
- gif->SetDither(msgBox.exec() == QMessageBox::AcceptRole);
- }
-#endif
-#ifdef VTK_USE_VIDEO_FOR_WINDOWS
- if (ext==".avi") {
- vtkAVIWriter *mpg = vtkAVIWriter::New();
- vidwriter = mpg;
- mpg->SetQuality(2);
- bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1024, 1, &ok);
- if(!ok)
- fps = 5;
- mpg->SetRate(fps);
- }
-#endif
-#ifdef VTK_USE_FFMPEG_ENCODER
- if (ext==".avi") {
- vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
- vidwriter = mpg;
- mpg->SetQuality(2);
- bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1024, 1, &ok);
- if(!ok)
- fps = 5;
- mpg->SetRate(fps);
- mpg->SetBitRateTolerance(int(ceil(12.0*1024*1024/fps)));
- }
-#endif
-#ifdef VTK_USE_MPEG2_ENCODER
- if (ext==".mpg") {
- vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
- vidwriter = mpg;
- }
-#endif
-
- // Take video if not null
- if(vidwriter!=NULL){
- vidwriter->SetInput(image);
- vidwriter->SetFileName(fileName.toStdString().c_str());
- vidwriter->Start();
- int nSlice = mSlicerManagers[smIndex]->GetSlicer(0)->GetTMax();
- for(int i=0; i<=nSlice; i++) {
- mSlicerManagers[smIndex]->SetNextTSlice(0);
- vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
- w2i->SetInput(widget->GetRenderWindow());
- w2i->Update();
- vidwriter->SetInput(w2i->GetOutput());
- vidwriter->Write();
- }
- vidwriter->End();
- vidwriter->Delete();
- return;
- }
-
- QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
- }
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::GoToCursor()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- for (int column = 1; column < 5; column++) {
- if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
- double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
- mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
- cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
- mSlicerManagers[index]->UpdateViews(1,column-1);
- mSlicerManagers[index]->UpdateLinked(column-1);
- break;
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::PlayPause()
-{
- if (playMode) {
- playMode = 0;
- playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
- ImageInfoChanged();
- return;
- } else {
- int image_number=DataTree->topLevelItemCount();
- bool has_temporal;
- for (int i=0; i<image_number; i++)
- if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0) {
- has_temporal=true;
- break;
- }
- if (has_temporal) {
- playMode = 1;
- playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
- }
- }
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::PlayNext()
-{
- if (playMode && !this->isHidden()) {
- int image_number=DataTree->topLevelItemCount();
- ///Only play one slicer per SM, and only if the SM is being displayed
- for (int i=0; i<image_number; i++)
- for (int j=0; j<4; j++)
- if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
- DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
- mSlicerManagers[i]->SetNextTSlice(j);
- break;
- }
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
- }
-}
-//------------------------------------------------------------------------------
-
-void vvMainWindow::ShowLastImage()
-{
- if (mSlicerManagers.size() > 1) {
- QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
- CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
- item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
- DisplayChanged(item,1);
- }
-}
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateRenderWindows()
-{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
- mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
- mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
- mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
- }
- if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
- if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
- if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
- if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SegmentationOnCurrentImage()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-
- vvSegmentationDialog segmentation;
- segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
- segmentation.exec();
-}
-//------------------------------------------------------------------------------
-
-void vvMainWindow::SurfaceViewerLaunch()
-{
- vvSurfaceViewerDialog surfaceViewer;
- surfaceViewer.exec();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
-{
- int number=0;
- for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
- vvSlicerManager * v = mSlicerManagers[l];
- if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
- number = std::max(number, v->GetBaseFileNameNumber()+1);
- }
- }
- return number;
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
-{
- // Change filename if another image exist with the same name
- int number = GetImageDuplicateFilenameNumber(filename);
-
- // Create new SliceManager
- vvSlicerManager* slicer_manager = new vvSlicerManager(4);
- slicer_manager->SetImage(image);//, IMAGE, number);
- // filename = filename+"_"+clitk::toString(number);
- slicer_manager->SetFilename(filename, number);
- mSlicerManagers.push_back(slicer_manager);
-
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
- item->setData(1,Qt::UserRole,tr("image"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
- qApp->processEvents();
-
- for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
-
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- rButton->setEnabled(0);
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->addTopLevelItem(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = QDir::current().absoluteFilePath(slicer_manager->GetFileName().c_str()) + QString::number(mSlicerManagers.size()-1);
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- mSlicerManagers.back()->SetId(id.toStdString());
-
- linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
- , id.toStdString());
-
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this, SLOT(CurrentImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
- // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
- this,SLOT(WindowLevelChanged()));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(ImageInfoChanged()));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
- connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
- connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- UpdateTree();
- qApp->processEvents();
- InitSlicers();
- ShowLastImage();
- InitDisplay();
- qApp->processEvents();
-
- // End
- ImageInfoChanged();
- return slicer_manager;
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvMainWindow::UpdateCurrentSlicer()
-{
- int index = -1;
- if (DataTree->selectedItems().size() > 0) {
- index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- }
- mSlicerManagerCurrentIndex = index;
-}
-//------------------------------------------------------------------------------
-
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff