several 4D sequences allowed resulting in several 4D mhd files

diff --git a/vv/scripts/create_mhd_4D.sh b/vv/scripts/create_mhd_4D.sh
index 238e26aa9b4e68f649fc13af46003d098ced77c3..ae3f5fa4711e094613353e4c2f835e8e6f66eeb4 100755 (executable)
--- a/vv/scripts/create_mhd_4D.sh
+++ b/vv/scripts/create_mhd_4D.sh
@@ -1,32 +1,73 @@
 #!/bin/sh
 
 
-#####################################################################
-# create_mhd_4D        argument : repertoire nom_fichier_de_sortie #
-#####################################################################
+#################################################
+# create_mhd_4D        argument : repertoire   #
+#################################################
 if [ $# -lt 1 ]
 then
-    echo "Usage: create_mhd_4D.sh directory output_file_name(without path)"
-    exit 1
+  echo "Usage: create_mhd_4D.sh DIRECTORY"
+  exit 1
 fi
 
-cd $1
-nbph=`find . -iname "*0.mhd" | wc -l`
-if [ $nbph = 0 ]
+nb_phase_file=`find $1 -iname "*[0-99].[0-9].mhd" | wc -l`
+if [ $nb_phase_file = 0 ]
 then
-    echo "Error: no phase found"
-    exit 1
+  echo "Error: no phase found"
+  exit 1
 fi
-orig=`ls -1 *0.mhd | head -n 1`
-
-cat $orig | sed "s/NDims = .*/NDims = 4/
-                s/TransformMatrix = .*/TransformMatrix = 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1/
-                /Offset/ s/.*/& 0/
-                /CenterOfRotation/ s/.*/& 0/
-                s/AnatomicalOrientation = .*/AnatomicalOrientation = ????/
-                /ElementSpacing/ s/.*/& 1/
-                /DimSize/ s/.*/& $nbph/
-                s/ElementDataFile = .*/ElementDataFile = LIST/" > $2
-
-ls -1 *0.raw >> $2
-cd ..
+
+list_pattern=""
+list_phase_file=`find $1 -iname "*[0-99].[0-9].mhd"`
+for phase_file in $list_phase_file
+do
+  phase_file_name=`basename $phase_file`
+  if [[ ! -z `echo "$phase_file_name" | grep ","` ]]
+  then
+    preffix=`echo $phase_file_name | sed "s/,_.*/,_/"`
+  else
+    preffix="NONE"
+  fi
+  if [[ -z `echo "$list_pattern" | grep "$preffix"` ]]
+  then
+    list_pattern="$list_pattern $preffix"
+  fi
+done
+
+
+for pattern in $list_pattern
+do
+
+  if [ "$pattern" = "NONE" ]
+  then
+    pattern=""
+  fi
+
+  nbph0=`find $1 -iname "${pattern}[0-9].[0-9].mhd" | wc -l`
+  orig0=`find $1 -iname "${pattern}[0-9].[0-9].mhd" | sort | head -n 1`
+  listph0=`find $1 -iname "${pattern}[0-9].[0-9].raw" | sort`
+
+  nbph1=`find $1 -iname "${pattern}[0-9][0-9].[0-9].mhd" | wc -l`
+  orig1=`find $1 -iname "${pattern}[0-9][0-9].[0-9].mhd" | sort | head -n 1`
+  listph1=`find $1 -iname "${pattern}[0-9][0-9].[0-9].raw" | sort`
+
+  nbph=$(( nbph0+nbph1 ))
+  orig=`echo -e "$orig0\n$orig1" | head -n 1`
+  listph="$listph0 $listph1"
+
+  cat $orig | sed "s/NDims = .*/NDims = 4/
+                 s/TransformMatrix = .*/TransformMatrix = 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1/
+                 /Offset/ s/.*/& 0/
+                 /CenterOfRotation/ s/.*/& 0/
+                 s/AnatomicalOrientation = .*/AnatomicalOrientation = ????/
+                 /ElementSpacing/ s/.*/& 1/
+                 /DimSize/ s/.*/& $nbph/
+                 s/ElementDataFile = .*/ElementDataFile = LIST/" > "$1/${pattern}_4D.mhd"
+  
+  for ph in $listph
+  do
+    ph=`basename $ph`
+    echo "$ph" >> "$1/${pattern}_4D.mhd"
+  done
+
+done