Moved from repository clitk to clitk.private/deprecated

diff --git a/segmentation/clitkBool.cxx b/segmentation/clitkBool.cxx
deleted file mode 100644 (file)
index dbb313c..0000000
--- a/segmentation/clitkBool.cxx
+++ /dev/null
@@ -1,45 +0,0 @@
-/*=========================================================================
-  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
-
-  Authors belong to:
-  - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
-  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the copyright notices for more information.
-
-  It is distributed under dual licence
-
-  - BSD        See included LICENSE.txt file
-  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-
-// clitk
-#include "clitkBool_ggo.h"
-#include "clitkBooleanOperatorLabelImageGenericFilter.h"
-
-//--------------------------------------------------------------------
-int main(int argc, char * argv[])
-{
-
-  // Init command line
-  GGO(clitkBool, args_info);
-  CLITK_INIT;
-
-  // Filter
-  typedef clitk::BooleanOperatorLabelImageGenericFilter<args_info_clitkBool> FilterType;
-  FilterType::Pointer filter = FilterType::New();
-
-  filter->SetArgsInfo(args_info);
-  
-  try {
-    filter->Update();
-  } catch(std::runtime_error e) {
-    std::cout << e.what() << std::endl;
-  }
-
-  return EXIT_SUCCESS;
-} // This is the end, my friend
-//--------------------------------------------------------------------

diff --git a/segmentation/clitkBool.ggo b/segmentation/clitkBool.ggo
deleted file mode 100644 (file)
index f885655..0000000
--- a/segmentation/clitkBool.ggo
+++ /dev/null
@@ -1,14 +0,0 @@
-#File clitkExtractMediastinalVessels.ggo
-package "clitkExtractMediastinalVessels"
-version "1.0"
-purpose "Extract MediastinalVessels"
-
-option "config"                -  "Config file"                  string        no
-option "imagetypes"     -  "Display allowed image types"  flag          off
-option "verbose"        v  "Verbose"                     flag          off
-
-option "input"         i       "Input mask 1"               string     yes
-option "input2"        j       "Input mask 2"               string     yes
-option "output"        o       "Output filename"            string     yes
-
-option "type"          t       "Bool type (0=AndNot, 1=And, 2=Or)"               int default="1" no

diff --git a/segmentation/clitkBooleanOperatorLabelImageGenericFilter.h b/segmentation/clitkBooleanOperatorLabelImageGenericFilter.h
deleted file mode 100644 (file)
index acd69ff..0000000
--- a/segmentation/clitkBooleanOperatorLabelImageGenericFilter.h
+++ /dev/null
@@ -1,80 +0,0 @@
-/*=========================================================================
-  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
-
-  Authors belong to: 
-  - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
-  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the copyright notices for more information.
-
-  It is distributed under dual licence
-
-  - BSD        See included LICENSE.txt file
-  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-
-#ifndef CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_H
-#define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_H
-
-#include "clitkIO.h"
-#include "clitkImageToImageGenericFilter.h"
-#include "clitkBooleanOperatorLabelImageFilter.h"
-
-//--------------------------------------------------------------------
-namespace clitk 
-{
-  
-  template<class ArgsInfoType>
-  class ITK_EXPORT BooleanOperatorLabelImageGenericFilter: 
-    public ImageToImageGenericFilter<BooleanOperatorLabelImageGenericFilter<ArgsInfoType> >
-  {
-    
-  public:
-    //--------------------------------------------------------------------
-    BooleanOperatorLabelImageGenericFilter();
-
-    //--------------------------------------------------------------------
-    typedef ImageToImageGenericFilter<BooleanOperatorLabelImageGenericFilter<ArgsInfoType> > Superclass;
-    typedef BooleanOperatorLabelImageGenericFilter Self;
-    typedef itk::SmartPointer<Self>           Pointer;
-    typedef itk::SmartPointer<const Self>     ConstPointer;
-
-    //--------------------------------------------------------------------
-    itkNewMacro(Self);  
-    itkTypeMacro(BooleanOperatorLabelImageGenericFilter, LightObject);
-
-    //--------------------------------------------------------------------
-    // Options for the GenericFilter
-    void SetArgsInfo(const ArgsInfoType & a);
-
-    //--------------------------------------------------------------------
-    // Options for the Filter
-    template<class FilterType> 
-    void SetOptionsFromArgsInfoToFilter(FilterType * f) ;
-
-    //--------------------------------------------------------------------
-    // Main function called each time the filter is updated
-    template<class ImageType>  
-    void UpdateWithInputImageType();
-
-  protected:
-    template<unsigned int Dim> void InitializeImageType();
-    ArgsInfoType mArgsInfo;
-    
-  private:
-    BooleanOperatorLabelImageGenericFilter(const Self&); //purposely not implemented
-    void operator=(const Self&); //purposely not implemented
-    
-  }; // end class
-  //--------------------------------------------------------------------
-    
-} // end namespace clitk
-
-#ifndef ITK_MANUAL_INSTANTIATION
-#include "clitkBooleanOperatorLabelImageGenericFilter.txx"
-#endif
-
-#endif // #define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_H

diff --git a/segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx b/segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx
deleted file mode 100644 (file)
index 0c07b67..0000000
--- a/segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx
+++ /dev/null
@@ -1,104 +0,0 @@
-/*=========================================================================
-  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
-
-  Authors belong to: 
-  - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
-  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the copyright notices for more information.
-
-  It is distributed under dual licence
-
-  - BSD        See included LICENSE.txt file
-  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
-
-#ifndef CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_TXX
-#define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_TXX
-
-#include "clitkImageCommon.h"
-  
-//--------------------------------------------------------------------
-template<class ArgsInfoType>
-clitk::BooleanOperatorLabelImageGenericFilter<ArgsInfoType>::BooleanOperatorLabelImageGenericFilter():
-  ImageToImageGenericFilter<Self>("BooleanOperatorLabelImage") 
-{
-  // Default values
-  cmdline_parser_clitkBool_init(&mArgsInfo);
-  InitializeImageType<3>(); // Only for 3D images
-}
-//--------------------------------------------------------------------
-
-
-//--------------------------------------------------------------------
-template<class ArgsInfoType>
-template<unsigned int Dim>
-void clitk::BooleanOperatorLabelImageGenericFilter<ArgsInfoType>::InitializeImageType() 
-{  
-  ADD_IMAGE_TYPE(Dim, uchar); // Can add float later
-}
-//--------------------------------------------------------------------
-  
-
-//--------------------------------------------------------------------
-template<class ArgsInfoType>
-void clitk::BooleanOperatorLabelImageGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a) 
-{
-  mArgsInfo=a;
-  SetIOVerbose(mArgsInfo.verbose_flag);
-  if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
-  if (mArgsInfo.input_given) AddInputFilename(mArgsInfo.input_arg);
-  if (mArgsInfo.input2_given) AddInputFilename(mArgsInfo.input2_arg);
-}
-//--------------------------------------------------------------------
-
-
-//--------------------------------------------------------------------
-template<class ArgsInfoType>
-template<class FilterType>
-void 
-clitk::BooleanOperatorLabelImageGenericFilter<ArgsInfoType>::
-SetOptionsFromArgsInfoToFilter(FilterType * f)
-{
-  // Operation type
-  f->SetOperationType(typename FilterType::OperationTypeEnumeration(mArgsInfo.type_arg));
- 
-  // Output filename
-  this->AddOutputFilename(mArgsInfo.output_arg);
-}
-//--------------------------------------------------------------------
-
-
-//--------------------------------------------------------------------
-// Update with the number of dimensions and the pixeltype
-//--------------------------------------------------------------------
-template<class ArgsInfoType>
-template<class ImageType>
-void clitk::BooleanOperatorLabelImageGenericFilter<ArgsInfoType>::UpdateWithInputImageType() 
-{ 
-  // Reading input
-  typename ImageType::Pointer input1 = this->template GetInput<ImageType>(0);
-  typename ImageType::Pointer input2 = this->template GetInput<ImageType>(1);
-
-  // Create filter
-  typedef clitk::BooleanOperatorLabelImageFilter<ImageType> FilterType;
-  typename FilterType::Pointer filter = FilterType::New();
-    
-  // Set global Options 
-  filter->SetInput1(input1);
-  filter->SetInput2(input2);
-  SetOptionsFromArgsInfoToFilter<FilterType>(filter);
-
-  // Go !
-  filter->Update();
-
-  // Write/Save results
-  typename ImageType::Pointer output = filter->GetOutput();
-  this->template SetNextOutput<ImageType>(output); 
-}
-//--------------------------------------------------------------------
-
-#endif //#define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_TXX