--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+#ifndef clitkDVHGenericFilter_cxx
+#define clitkDVHGenericFilter_cxx
+
+#include "clitkDVHGenericFilter.h"
+
+namespace clitk
+{
+
+ //-----------------------------------------------------------
+ // Constructor
+ //-----------------------------------------------------------
+ DVHGenericFilter::DVHGenericFilter()
+ {
+ m_Verbose=false;
+ m_InputFileName="";
+ }
+ //-----------------------------------------------------------
+
+ //-----------------------------------------------------------
+ // Update
+ //-----------------------------------------------------------
+ void DVHGenericFilter::Update()
+ {
+ // Read the Dimension and PixelType
+ int Dimension, Components;
+ std::string PixelType;
+ ReadImageDimensionAndPixelType(m_InputFileName, Dimension, PixelType, Components);
+
+ if (m_ArgsInfo.channel_arg < -1 || m_ArgsInfo.channel_arg >= Components) {
+ std::cout << "Invalid image channel" << std::endl;
+ return;
+ }
+
+ if (m_ArgsInfo.mask_given) {
+ int maskDimension, maskComponents;
+ std::string maskPixelType;
+ ReadImageDimensionAndPixelType(m_ArgsInfo.mask_arg, maskDimension, maskPixelType, maskComponents);
+ if (!(maskDimension == Dimension || maskDimension == (Dimension - 1))) {
+ std::cout << "Dimension of label mask must be equal to the (d)imension of the input image or d-1." << std::endl;
+ return;
+ }
+ }
+
+
+ // Call UpdateWithDim
+ if (Dimension==2) {
+ switch (Components) {
+ case 1:
+ UpdateWithDim<2,1>(PixelType);
+ break;
+ case 2:
+ UpdateWithDim<2,2>(PixelType);
+ break;
+ case 3:
+ UpdateWithDim<2,3>(PixelType);
+ break;
+ default:
+ std::cout << "Unsupported number of channels" << std::endl;
+ break;
+ }
+ }
+ else if (Dimension==3) {
+ switch (Components) {
+ case 1:
+ UpdateWithDim<3,1>(PixelType);
+ break;
+ case 2:
+ UpdateWithDim<3,2>(PixelType);
+ break;
+ case 3:
+ UpdateWithDim<3,3>(PixelType);
+ break;
+ default:
+ std::cout << "Unsupported number of channels" << std::endl;
+ break;
+ }
+ }
+ else if (Dimension==4) {
+ switch (Components) {
+ case 1:
+ UpdateWithDim<4,1>(PixelType);
+ break;
+ case 2:
+ UpdateWithDim<4,2>(PixelType);
+ break;
+ case 3:
+ UpdateWithDim<4,3>(PixelType);
+ break;
+ default:
+ std::cout << "Unsupported number of channels" << std::endl;
+ break;
+ }
+ }
+ else {
+ std::cout<<"Error, Only for 2 or 3 Dimensions!!!"<<std::endl ;
+ return;
+ }
+ }
+
+
+} //end clitk
+
+#endif //#define clitkDVHGenericFilter_cxx
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+#ifndef CLITKDVHGENERICFILTER_H
+#define CLITKDVHGENERICFILTER_H
+
+// clitk include
+#include "clitkIO.h"
+#include "clitkCommon.h"
+#include "clitkImageCommon.h"
+#include "clitkImageToImageGenericFilter.h"
+#include "clitkDVH_ggo.h"
+
+// itk include
+#include "itkImage.h"
+#include "itkImageIOBase.h"
+#include "itkImageRegionIterator.h"
+#include "itkImageRegionConstIterator.h"
+#include "itkLightObject.h"
+#include "itkLabelStatisticsImageFilter.h"
+#include "itkLabelGeometryImageFilter.h"
+
+//--------------------------------------------------------------------
+namespace clitk
+{
+
+//template<class args_info_type>
+class ITK_EXPORT DVHGenericFilter: public itk::LightObject
+{
+
+public:
+
+
+ //--------------------------------------------------------------------
+ typedef DVHGenericFilter Self;
+ typedef itk::LightObject Superclass;
+ typedef itk::SmartPointer<Self> Pointer;
+ typedef itk::SmartPointer<const Self> ConstPointer;
+
+ //--------------------------------------------------------------------
+ // Method for creation through the object factory
+ // and Run-time type information (and related methods)
+ itkNewMacro(Self);
+ itkTypeMacro(DVHGenericFilter, LightObject);
+
+ //--------------------------------------------------------------------
+ void SetArgsInfo(const args_info_clitkDVH & a)
+ {
+ m_ArgsInfo=a;
+ m_Verbose=m_ArgsInfo.verbose_flag;
+
+ if(m_ArgsInfo.input_given)
+ m_InputFileName=m_ArgsInfo.input_arg[0];
+ else if(m_ArgsInfo.inputs_num>0)
+ m_InputFileName=m_ArgsInfo.inputs[0];
+ else {
+ std::cerr << "You must give an input file name" << std::endl;
+ exit(1);
+ }
+ }
+ //--------------------------------------------------------------------
+ // Main function called each time the filter is updated
+ //template<class InputImageType>
+ //void UpdateWithInputImageType();
+ void Update();
+
+ // Set methods
+ void SetDefaultPixelValue (double value) { mDefaultPixelValue = value ;}
+ void SetTypeOfOperation (int value) { mTypeOfOperation = value ;}
+ void SetScalar (double value) { mScalar = value ;}
+ void EnableOverwriteInputImage(bool b);
+
+ // Get methods
+ double GetDefaultPixelValue () { return mDefaultPixelValue ;}
+ int GetTypeOfOperation () { return mTypeOfOperation ;}
+ double GetScalar () { return mScalar ;}
+
+protected:
+
+ //--------------------------------------------------------------------
+ // Constructor & Destructor
+ DVHGenericFilter();
+ ~DVHGenericFilter() {};
+ // template<unsigned int Dim> void InitializeImageType();
+ // args_info_type mArgsInfo;
+
+ //--------------------------------------------------------------------
+ // Tempated members
+ //--------------------------------------------------------------------
+ template<unsigned int Dimension, unsigned int Components> void UpdateWithDim(std::string PixelType);
+ template <unsigned int Dimension, class PixelType, unsigned int Components> void UpdateWithDimAndPixelType();
+
+ //--------------------------------------------------------------------
+ // Data members
+ //--------------------------------------------------------------------
+ args_info_clitkDVH m_ArgsInfo;
+ bool m_Verbose;
+ std::string m_InputFileName;
+
+ template<unsigned int Dim> void InitializeImageType();
+ bool mIsOperationUseASecondImage;
+ double mScalar;
+ double mDefaultPixelValue;
+ int mTypeOfOperation;
+ bool mOverwriteInputImage;
+ bool mOutputIsFloat;
+
+ template<class Iter1, class Iter2> void ComputeImage(Iter1 it, Iter2 ito);
+
+ template<class Iter1, class Iter2, class Iter3> void ComputeImage(Iter1 it1, Iter2 it2, Iter3 ito);
+
+
+}; // end class
+//--------------------------------------------------------------------
+
+} // end namespace clitk
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "clitkDVHGenericFilter.txx"
+#endif
+
+#endif // #define clitkDVHGenericFilter_h
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+#ifndef clitkDVHGenericFilter_txx
+#define clitkDVHGenericFilter_txx
+
+/* =================================================
+ * @file clitkDVHGenericFilter.txx
+ * @author Agata Krason <agata.krason@creatis.insa-lyon.fr>
+ * @date 20 November 2013
+ *
+ * @brief Dose volume and image histogram
+ *
+ ===================================================*/
+
+// itk include
+#include "itkBinaryThresholdImageFilter.h"
+#include "itkMaskImageFilter.h"
+#include "itkMaskNegatedImageFilter.h"
+#include "itkNthElementImageAdaptor.h"
+#include "itkJoinSeriesImageFilter.h"
+#include "itkMinimumMaximumImageCalculator.h"
+
+// clitk include
+#include <clitkCommon.h>
+#include "clitkImageCommon.h"
+#include "clitkDVHGenericFilter.h"
+#include "clitkCropLikeImageFilter.h"
+#include "clitkResampleImageWithOptionsFilter.h"
+
+//-------------------------------------------------------------------
+//
+namespace clitk
+{
+
+//-------------------------------------------------------------------
+template<unsigned int Dimension, unsigned int Components>
+void
+DVHGenericFilter::UpdateWithDim(std::string PixelType)
+{
+ if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<" with " << Components << " channel(s)..."<<std::endl;
+
+ if(PixelType == "short"){
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, signed short, Components>();
+ }
+ else if(PixelType == "unsigned_short"){
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, unsigned short, Components>();
+ }
+
+ else if (PixelType == "unsigned_char"){
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, unsigned char, Components>();
+ }
+
+ else if(PixelType == "double"){
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and double..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, double, Components>();
+ }
+ else {
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, float, Components>();
+ }
+}
+
+
+//-------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//-------------------------------------------------------------------
+template <unsigned int Dimension, class PixelType, unsigned int Components>
+void
+DVHGenericFilter::UpdateWithDimAndPixelType()
+{
+
+ // ImageTypes
+ typedef unsigned char LabelPixelType;
+ typedef itk::Image<itk::Vector<PixelType, Components>, Dimension> InputImageType;
+ typedef itk::Image<LabelPixelType, Dimension> LabelImageType;
+
+ // Read the input
+ typedef itk::ImageFileReader<InputImageType> InputReaderType;
+ typename InputReaderType::Pointer reader = InputReaderType::New();
+ reader->SetFileName( m_InputFileName);
+ reader->Update();
+ typename InputImageType::Pointer input= reader->GetOutput();
+
+ typedef itk::NthElementImageAdaptor<InputImageType, PixelType> InputImageAdaptorType;
+ typedef itk::Image<PixelType, Dimension> OutputImageType;
+
+ typename InputImageAdaptorType::Pointer input_adaptor = InputImageAdaptorType::New();
+ input_adaptor->SetImage(input);
+
+ // Filter
+ typedef itk::LabelStatisticsImageFilter<InputImageAdaptorType, LabelImageType> StatisticsImageFilterType;
+ typename StatisticsImageFilterType::Pointer statisticsFilter=StatisticsImageFilterType::New();
+ statisticsFilter->SetInput(input_adaptor);
+
+ // Label image
+ typename LabelImageType::Pointer labelImage;
+ if (m_ArgsInfo.mask_given) {
+ int maskDimension, maskComponents;
+ std::string maskPixelType;
+ ReadImageDimensionAndPixelType(m_ArgsInfo.mask_arg, maskDimension, maskPixelType, maskComponents);
+
+ if (maskDimension == Dimension - 1) {
+ // Due to a limitation of filter itk::LabelStatisticsImageFilter, InputImageType and LabelImageType
+ // must have the same image dimension. However, we want to support label images with Dl = Di - 1,
+ // so we need to replicate the label image as many times as the size along dimension Di.
+ if (m_Verbose)
+ std::cout << "Replicating label image to match input image's dimension... " << std::endl;
+
+ typedef itk::Image<LabelPixelType, Dimension - 1> ReducedLabelImageType;
+ typedef itk::ImageFileReader<ReducedLabelImageType> LabelImageReaderType;
+ typedef itk::JoinSeriesImageFilter<ReducedLabelImageType, LabelImageType> JoinImageFilterType;
+
+
+ typename LabelImageReaderType::Pointer labelImageReader=LabelImageReaderType::New();
+ labelImageReader->SetFileName(m_ArgsInfo.mask_arg);
+ labelImageReader->Update();
+
+ typename JoinImageFilterType::Pointer joinFilter = JoinImageFilterType::New();
+ typename InputImageType::SizeType size = input->GetLargestPossibleRegion().GetSize();
+ for (unsigned int i = 0; i < size[Dimension - 1]; i++)
+ joinFilter->PushBackInput(labelImageReader->GetOutput());
+
+ joinFilter->Update();
+ labelImage = joinFilter->GetOutput();
+ }
+ else {
+ typedef itk::ImageFileReader<LabelImageType> LabelImageReaderType;
+ typename LabelImageReaderType::Pointer labelImageReader=LabelImageReaderType::New();
+ labelImageReader->SetFileName(m_ArgsInfo.mask_arg);
+ labelImageReader->Update();
+ labelImage= labelImageReader->GetOutput();
+
+ // Check mask sampling/size
+ if (!HaveSameSizeAndSpacing<LabelImageType, InputImageType>(labelImage, input)) {
+ if (m_ArgsInfo.allow_resize_flag) {
+ if (m_ArgsInfo.verbose_flag) {
+ std::cout << "Resize mask image like input" << std::endl;
+ }
+
+ typedef clitk::ResampleImageWithOptionsFilter<LabelImageType> ResamplerType;
+ typename ResamplerType::Pointer resampler = ResamplerType::New();
+ resampler->SetInput(labelImage);
+ resampler->SetOutputSpacing(input->GetSpacing());
+ resampler->SetGaussianFilteringEnabled(false);
+ resampler->Update();
+ labelImage = resampler->GetOutput();
+ labelImage->GetSpacing();
+ typedef clitk::CropLikeImageFilter<LabelImageType> FilterType;
+ typename FilterType::Pointer crop = FilterType::New();
+ crop->SetInput(labelImage);
+ crop->SetCropLikeImage(input);
+ crop->Update();
+ labelImage = crop->GetOutput();
+ //writeImage<LabelImageType>(labelImage, "test2.mha");
+
+ }
+ else {
+ std::cerr << "Mask image has a different size/spacing than input. Abort" << std::endl;
+ exit(-1);
+ }
+ }
+
+ }
+
+ }
+ else {
+ labelImage=LabelImageType::New();
+ labelImage->SetRegions(input->GetLargestPossibleRegion());
+ labelImage->SetOrigin(input->GetOrigin());
+ labelImage->SetSpacing(input->GetSpacing());
+ labelImage->Allocate();
+ labelImage->FillBuffer(m_ArgsInfo.label_arg[0]);
+ }
+ statisticsFilter->SetLabelInput(labelImage);
+
+ // Check/compute spacing
+ const typename LabelImageType::SpacingType& spacing = input->GetSpacing();
+ double spacing_cc = (spacing[0]*spacing[1]*spacing[2])/1000;
+ // std::cout<<"Spacing x : "<<spacing[0]<<std::endl;
+ // std::cout<<"Spacing y : "<< spacing[1]<<std::endl;
+ // std::cout<<"Spacing z : "<< spacing[2]<<std::endl;
+ // std::cout <<"spacing_cc : "<< spacing_cc << std::endl;
+
+ // For each Label
+ typename LabelImageType::PixelType label;
+ unsigned int numberOfLabels;
+ if (m_ArgsInfo.label_given)
+ numberOfLabels=m_ArgsInfo.label_given;
+ else
+ numberOfLabels=1;
+
+ unsigned int firstComponent = 0, lastComponent = 0;
+ if (m_ArgsInfo.channel_arg == -1) {
+ firstComponent = 0;
+ lastComponent = Components - 1;
+ }
+ else {
+ firstComponent = m_ArgsInfo.channel_arg;
+ lastComponent = m_ArgsInfo.channel_arg;
+ }
+
+ for (unsigned int c=firstComponent; c<=lastComponent; c++) {
+ if (m_Verbose) std::cout << std::endl << "Processing channel " << c << std::endl;
+
+ input_adaptor->SelectNthElement(c);
+ input_adaptor->Update();
+
+ for (unsigned int k=0; k< numberOfLabels; k++) {
+ label=m_ArgsInfo.label_arg[k];
+ // Histogram
+ if (m_ArgsInfo.histogram_given)
+ {
+ std::cout<<"--------------"<<std::endl;
+ std::cout<<"| Label: |"<<label<<" |"<<std::endl;
+ std::cout<<"--------------"<<std::endl;
+
+ statisticsFilter->SetUseHistograms(true);
+ statisticsFilter->SetHistogramParameters(m_ArgsInfo.bins_arg, m_ArgsInfo.lower_arg, m_ArgsInfo.upper_arg);
+ }
+
+ // DVHistogram
+ if(m_ArgsInfo.dvhistogram_given)
+ {
+ statisticsFilter->SetUseHistograms(true);
+ statisticsFilter->SetHistogramParameters(m_ArgsInfo.bins_arg, m_ArgsInfo.lower_arg, m_ArgsInfo.upper_arg);
+ }
+
+ statisticsFilter->Update();
+
+ // Histogram
+ if (m_ArgsInfo.histogram_given)
+ {
+ if (m_Verbose) std::cout<<"Median: ";
+ std::cout<<statisticsFilter->GetMedian(label)<<std::endl;
+
+ typename StatisticsImageFilterType::HistogramPointer histogram =statisticsFilter->GetHistogram(label);
+
+ // Screen
+ if (m_Verbose) std::cout<<"Histogram: "<<std::endl;
+ std::cout<<"# MinBin\tMidBin\tMaxBin\tFrequency"<<std::endl;
+ for( int i =0; i <m_ArgsInfo.bins_arg; i++)
+ std::cout<<histogram->GetBinMin(0,i)<<"\t"<<histogram->GetMeasurement(i,0)<<"\t"<<histogram->GetBinMax(0,i)<<"\t"<<histogram->GetFrequency(i)<<std::endl;
+ // Add to the file
+ std::ofstream histogramFile(m_ArgsInfo.histogram_arg);
+ histogramFile<<"#Histogram: "<<std::endl;
+ histogramFile<<"#MinBin\tMidBin\tMaxBin\tFrequency"<<std::endl;
+ for( int i =0; i <m_ArgsInfo.bins_arg; i++)
+ histogramFile<<histogram->GetBinMin(0,i)<<"\t"<<histogram->GetMeasurement(i,0)<<"\t"<<histogram->GetBinMax(0,i)<<"\t"<<histogram->GetFrequency(i)<<std::endl;
+ }
+
+ // DVH
+ if(m_ArgsInfo.dvhistogram_given)
+ {
+ typename StatisticsImageFilterType::HistogramPointer dvhistogram = statisticsFilter->GetHistogram(label);
+
+ // Screen
+ std::cout<<"Total volume : ";
+ std::cout<<statisticsFilter->GetCount(label)<<" [No. of voxels]"<<std::endl;
+ std::cout<<"Total volume : ";
+ std::cout<<((statisticsFilter->GetCount(label))*spacing_cc)<<" [cc]"<<std::endl;
+ std::cout<<"Dose mean: ";
+ std::cout<<statisticsFilter->GetMean(label)<<" [Gy]"<<std::endl;
+ std::cout<<"Dose min: ";
+ std::cout<<statisticsFilter->GetMinimum(label)<<" [Gy]"<<std::endl;
+ std::cout<<"Dose max: ";
+ std::cout<<statisticsFilter->GetMaximum(label)<<" [Gy]"<<std::endl;
+ std::cout<<" "<<std::endl;
+ std::cout<<"#Dose[Gy] Volume_diff[No. of voxels]] Volume_cumul[No. of voxels] Volume_diff[%] Volume_cumul[%] Volume_diff[cc] Volume_cumul[cc]"<<std::endl;
+ for( int i =0; i <m_ArgsInfo.bins_arg; i++)
+ {
+ double percentDiffVolume = ((dvhistogram->GetFrequency(i))*100)/(statisticsFilter->GetCount(label));
+ double popCumulativeVolume = 0;
+ for(int j=0; j<i; j++)
+ {
+ popCumulativeVolume+=(dvhistogram->GetFrequency(j));
+ }
+ double cumulativeVolume = popCumulativeVolume + (dvhistogram->GetFrequency(i));
+ double percentCumulativeVolume =(cumulativeVolume*100)/(statisticsFilter->GetCount(label)) ;
+ double ccCumulativeVolume = (popCumulativeVolume + (dvhistogram->GetFrequency(i)))*spacing_cc;
+ std::cout<<dvhistogram->GetBinMax(0,i)<<"\t "<<dvhistogram->GetFrequency(i)<<"\t "<<cumulativeVolume<<"\t "<<percentDiffVolume<<"\t "<<percentCumulativeVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<ccCumulativeVolume<<std::endl;
+ }
+
+ // Add to the file
+ std::ofstream dvhistogramFile(m_ArgsInfo.dvhistogram_arg);
+ dvhistogramFile<<"Total volume : ";
+ dvhistogramFile<<statisticsFilter->GetCount(label)<<" [No. of voxels]"<<std::endl;
+ dvhistogramFile<<"Total volume : ";
+ dvhistogramFile<<((statisticsFilter->GetCount(label))*spacing_cc)<<" [cc]"<<std::endl;
+ dvhistogramFile<<"Dose mean: ";
+ dvhistogramFile<<statisticsFilter->GetMean(label)<<" [Gy]"<<std::endl;
+ dvhistogramFile<<"Dose min: ";
+ dvhistogramFile<<statisticsFilter->GetMinimum(label)<<" [Gy]"<<std::endl;
+ dvhistogramFile<<"Dose max: ";
+ dvhistogramFile<<statisticsFilter->GetMaximum(label)<<" [Gy]"<<std::endl;
+ dvhistogramFile<<" "<<std::endl;
+ dvhistogramFile<<"#Dose[Gy] Volume_diff[No. of voxels]] Volume_cumul[No. of voxels] Volume_diff[%] Volume_cumul[%] Volume_diff[cc] Volume_cumul[cc]"<<std::endl;
+ for( int i =0; i <m_ArgsInfo.bins_arg; i++)
+ {
+ double percentDiffVolume = ((dvhistogram->GetFrequency(i))*100)/(statisticsFilter->GetCount(label));
+ double popCumulativeVolume = 0;
+ for(int j=0; j<i; j++)
+ {
+ popCumulativeVolume+=(dvhistogram->GetFrequency(j));
+ }
+ double cumulativeVolume = popCumulativeVolume + (dvhistogram->GetFrequency(i));
+ double percentCumulativeVolume =(cumulativeVolume*100)/(statisticsFilter->GetCount(label)) ;
+ double ccCumulativeVolume = (popCumulativeVolume + (dvhistogram->GetFrequency(i)))*spacing_cc;
+ dvhistogramFile<<dvhistogram->GetBinMax(0,i)<<"\t "<<dvhistogram->GetFrequency(i)<<"\t "<<cumulativeVolume<<"\t "<<percentDiffVolume<<"\t "<<percentCumulativeVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<ccCumulativeVolume<<std::endl;
+ }
+ }
+ }
+ }
+
+ return;
+
+}
+
+}//end clitk
+
+#endif //#define clitkDVHGenericFilter_txx
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff