Program: gdcm
Module: $RCSfile: gdcmFile.cxx,v $
Language: C++
- Date: $Date: 2007/05/23 14:18:10 $
- Version: $Revision: 1.330 $
+ Date: $Date: 2007/05/23 16:48:59 $
+ Version: $Revision: 1.331 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmRLEFramesInfo.h"
#include "gdcmJPEGFragmentsInfo.h"
#include "gdcmDataEntry.h"
+#include "gdcmSQItem.h"
#include <vector>
#include <stdio.h> //sscanf
return 1;
}
+// Special case:
+// ts["1.2.840.10008.5.1.4.1.1.4.1"] = "Enhanced MR Image Storage";
+bool File::GetSpacing(float &xspacing, float &yspacing, float &zspacing)
+{
+ xspacing = yspacing = zspacing = 2.0;
+ TS *ts = Global::GetTS();
+ std::string sopclassuid_used;
+ // D 0002|0002 [UI] [Media Storage SOP Class UID]
+
+ //const std::string &mediastoragesopclassuid_str = GetEntryValue(0x0002,0x0002);
+ const std::string &mediastoragesopclassuid_str = GetEntryString(0x0002,0x0002);
+ const std::string &mediastoragesopclassuid = ts->GetValue(mediastoragesopclassuid_str);
+ //D 0008|0016 [UI] [SOP Class UID]
+ const std::string &sopclassuid_str = GetEntryString(0x0008,0x0016);
+ const std::string &sopclassuid = ts->GetValue(sopclassuid_str);
+ if ( mediastoragesopclassuid == GDCM_UNFOUND && sopclassuid == GDCM_UNFOUND )
+ {
+ return false;
+ }
+ else
+ {
+ if( mediastoragesopclassuid == sopclassuid )
+ {
+ sopclassuid_used = mediastoragesopclassuid;
+ }
+ else
+ {
+ gdcmWarningMacro( "Inconsistant SOP Class UID: "
+ << mediastoragesopclassuid << " and " << sopclassuid );
+ return false;
+ }
+ }
+ // ok we have now the correc SOP Class UID
+ if( sopclassuid_used == "Enhanced MR Image Storage" )
+ {
+ SeqEntry *PerframeFunctionalGroupsSequence = GetSeqEntry(0x5200,0x9230);
+ unsigned int n = PerframeFunctionalGroupsSequence->GetNumberOfSQItems();
+ if( !n ) return false;
+ SQItem *item1 = PerframeFunctionalGroupsSequence->GetFirstSQItem();
+ DocEntry *p = item1->GetDocEntry(0x0028,0x9110);
+ if( !p ) return false;
+ SeqEntry *seq = dynamic_cast<SeqEntry*>(p);
+ unsigned int n1 = seq->GetNumberOfSQItems();
+ if( !n1 ) return false;
+ SQItem *item2 = seq->GetFirstSQItem();
+ // D 0028|0030 [DS] [Pixel Spacing] [0.83333331346511\0.83333331346511 ]
+ DocEntry *p2 = item2->GetDocEntry(0x0028,0x0030);
+ if( !p2 ) return false;
+ DataEntry *entry = dynamic_cast<DataEntry *>(p2);
+ std::string spacing = entry->GetString();
+ if ( sscanf( spacing.c_str(), "%f\\%f", &yspacing, &xspacing) != 2 )
+ {
+ xspacing = yspacing = 1.;
+ return false;
+ }
+ // D 0018|0050 [DS] [Slice Thickness] [1 ]
+ DocEntry *p3 = item2->GetDocEntry(0x0018,0x0050);
+ if( !p3 ) return false;
+ DataEntry *entry2 = dynamic_cast<DataEntry *>(p3);
+ std::string thickness = entry2->GetString();
+ if ( sscanf( thickness.c_str(), "%f", &zspacing) != 1 )
+ {
+ zspacing = 1.;
+ return false;
+ }
+ return true;
+ }
+
+ return false;
+ }
+
/**
* \brief Retrieve the -unnormalized- number of 'times' of '4D image'.
* User has to tell gdcm the location of this '4th Dimension component'
}
}
+
+
/**
* \brief gets the info from 0018,1164 : ImagerPixelSpacing
* then 0028,0030 : Pixel Spacing
float File::GetXSpacing()
{
float xspacing = 1.0;
+ float yspacing = 1.0;
+ float zspacing = 1.0;
+
uint32_t nbValue;
DataEntry *entry;
- bool ok = false;
+ bool ok = false;
+
+ if ( GetSpacing(xspacing,yspacing,zspacing) )
+ {
+ return xspacing;
+ }
+ // else fallback
+
/*
From:David Clunie - view profile
Date:Wed, May 24 2006 1:12 pm
*/
float File::GetYSpacing()
{
- float yspacing;
+ float xspacing = 1., yspacing = 1.0, zspacing = 1.;
uint32_t nbValue;
DataEntry *entry;
bool ok = false;
+
+ if ( GetSpacing(xspacing,yspacing,zspacing) )
+ {
+ return yspacing;
+ }
+ // else fallback
+
std::string SOPClassUID = GetEntryString(0x0008,0x0016);
float File::GetZSpacing()
{
- float zspacing = 1.0f;
+ float xspacing = 1.0;
+ float yspacing = 1.0;
+ float zspacing = 1.0;
+ if ( GetSpacing(xspacing,yspacing,zspacing) )
+ {
+ return zspacing;
+ }
// Spacing Between Slices : distance between the middle of 2 slices
// Slices may be :
return lutNbits;
}
+// Special case:
+// ts["1.2.840.10008.5.1.4.1.1.4.1"] = "Enhanced MR Image Storage";
+ bool File::GetRescaleSlopeIntercept(double &slope, double &intercept)
+ {
+ slope = 1.0;
+ intercept = 0.0;
+ TS *ts = Global::GetTS();
+ std::string sopclassuid_used;
+ // D 0002|0002 [UI] [Media Storage SOP Class UID]
+ const std::string &mediastoragesopclassuid_str = GetEntryString(0x0002,0x0002);
+ const std::string &mediastoragesopclassuid = ts->GetValue(mediastoragesopclassuid_str);
+ //D 0008|0016 [UI] [SOP Class UID]
+ const std::string &sopclassuid_str = GetEntryString(0x0008,0x0016);
+ const std::string &sopclassuid = ts->GetValue(sopclassuid_str);
+ if ( mediastoragesopclassuid == GDCM_UNFOUND && sopclassuid == GDCM_UNFOUND )
+ {
+ return false;
+ }
+ else
+ {
+ if( mediastoragesopclassuid == sopclassuid )
+ {
+ sopclassuid_used = mediastoragesopclassuid;
+ }
+ else
+ {
+ gdcmWarningMacro( "Inconsistant SOP Class UID: "
+ << mediastoragesopclassuid << " and " << sopclassuid );
+ return false;
+ }
+ }
+ // ok we have now the correc SOP Class UID
+ if( sopclassuid_used == "Enhanced MR Image Storage" )
+ {
+ SeqEntry *PerframeFunctionalGroupsSequence = GetSeqEntry(0x5200,0x9230);
+ unsigned int n = PerframeFunctionalGroupsSequence->GetNumberOfSQItems();
+ if( !n ) return false;
+ SQItem *item1 = PerframeFunctionalGroupsSequence->GetFirstSQItem();
+ DocEntry *p = item1->GetDocEntry(0x0028,0x9145);
+ if( !p ) return false;
+ SeqEntry *seq = dynamic_cast<SeqEntry*>(p);
+ unsigned int n1 = seq->GetNumberOfSQItems();
+ if( !n1 ) return false;
+ SQItem *item2 = seq->GetFirstSQItem();
+ // D 0028|1052 [DS] [Rescale Intercept] [0 ]
+ DocEntry *p2 = item2->GetDocEntry(0x0028,0x1052);
+ if( !p2 ) return false;
+ DataEntry *entry = dynamic_cast<DataEntry *>(p2);
+ std::string intercept_str = entry->GetString();
+ if ( sscanf( intercept_str.c_str(), "%lf", &intercept) != 1 )
+ {
+ intercept = 0.;
+ return false;
+ }
+ // D 0028|1053 [DS] [Rescale Slope] [5.65470085470085]
+ DocEntry *p3 = item2->GetDocEntry(0x0028,0x1053);
+ if( !p3 ) return false;
+ DataEntry *entry2 = dynamic_cast<DataEntry *>(p3);
+ std::string slope_str = entry2->GetString();
+ if ( sscanf( slope_str.c_str(), "%lf", &slope) != 1 )
+ {
+ slope = 1.;
+ return false;
+ }
+ return true;
+ }
+
+ return false;
+ }
+
/**
*\brief gets the info from 0028,1052 : Rescale Intercept
* @return Rescale Intercept. defaulted to 0.0 is not found or empty
*/
-float File::GetRescaleIntercept()
+double File::GetRescaleIntercept()
{
// 0028 1052 DS IMG Rescale Intercept
DataEntry *entry = GetDataEntry(0x0028, 0x1052);
*\brief gets the info from 0028,1053 : Rescale Slope
* @return Rescale Slope. defaulted to 1.0 is not found or empty
*/
-float File::GetRescaleSlope()
+double File::GetRescaleSlope()
{
- // 0028 1053 DS IMG Rescale Slope
- DataEntry *entry = GetDataEntry(0x0028, 0x1053);
- if( !entry )
- {
- gdcmDebugMacro( "Missing Rescale Slope (0028,1053)");
- return 1.0f;
+ double resInter = 0.;
+ double resSlope = 1.;
+ if ( GetRescaleSlopeIntercept(resSlope, resInter) )
+ {
+ return resSlope;
+ }
+ //0028 1053 DS IMG Rescale Slope
+ std::string strRescSlope = GetEntryString(0x0028,0x1053);
+ if ( strRescSlope != GDCM_UNFOUND )
+ {
+ if ( sscanf( strRescSlope.c_str(), "%lf ", &resSlope) != 1 )
+ {
+ // bug in the element 0x0028,0x1053
+ gdcmWarningMacro( "Rescale Slope (0028,1053) is empty.");
+ }
}
- return (float)entry->GetValue(0);
+
+ return resSlope;
}
/**
git://git.creatis.insa-lyon.fr / gdcm.git / commitdiff