Program: gdcm
Module: $RCSfile: PrintFile.cxx,v $
Language: C++
- Date: $Date: 2005/07/20 13:39:51 $
- Version: $Revision: 1.46 $
+ Date: $Date: 2005/08/28 17:02:34 $
+ Version: $Revision: 1.47 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmFileHelper.h"
#include "gdcmDebug.h"
+#include "gdcmDirList.h"
#include "gdcmArgMgr.h"
else
std::cout << "No LUT Data SeqEntry (0x0028,0x3000) found "
<< std::endl;
-
}
int main(int argc, char *argv[])
{
START_USAGE(usage)
- " \n PrintFile : \n",
- " Display the header of a ACR-NEMA/PAPYRUS/DICOM File",
- " usage: PrintFile filein=fileName [level=n] [noshadowseq][noshadow][noseq][debug] ",
+ " \n PrintFile : \n ",
+ " Display the header of a ACR-NEMA/PAPYRUS/DICOM File ",
+ " usage: PrintFile {filein=inputFileName|dirin=inputDirectoryName}[level=n]",
+ " [ { [noshadowseq] | [noshadow][noseq] } ] [debug] ",
" level = 0,1,2 : depending on the amount of details user wants to see",
- " noshadowseq: user doesn't want to load Private Sequences",
+ " noshadowseq: user doesn't want to load Private Sequences ",
" noshadow : user doesn't want to load Private groups (odd number)",
- " noseq : user doesn't want to load Sequences ",
- " debug : user wants to run the program in 'debug mode' ",
+ " noseq : user doesn't want to load Sequences ",
+ " debug : user wants to run the program in 'debug mode' ",
" showlut :user wants to display the Palette Color (as an int array)",
FINISH_USAGE
return 0;
}
- char *fileName = am->ArgMgrWantString("filein",usage);
+ char *fileName = am->ArgMgrGetString("filein",(char *)0);
+ char *dirName = am->ArgMgrGetString("dirin",(char *)0);
+
+ if ( (fileName == 0 && dirName == 0)
+ ||
+ (fileName != 0 && dirName != 0) )
+ {
+ std::cout <<std::endl
+ << "Either 'filein=' or 'dirin=' must be present;"
+ << std::endl << "Not both" << std::endl;
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 0;
+ }
+ if (am->ArgMgrDefined("debug"))
+ gdcm::Debug::DebugOn();
+
int loadMode = 0x00000000;
if ( am->ArgMgrDefined("noshadowseq") )
loadMode |= NO_SHADOWSEQ;
bool showlut = ( 0 != am->ArgMgrDefined("SHOWLUT") );
- if (am->ArgMgrDefined("debug"))
- gdcm::Debug::DebugOn();
-
/* if unused Param we give up */
if ( am->ArgMgrPrintUnusedLabels() )
{
delete am; // we don't need Argument Manager any longer
// ----------- End Arguments Manager ---------
-
- // gdcm::File::IsReadable() is no usable here, because we deal with
- // any kind of gdcm-Parsable *document*
- // not only gdcm::File (as opposed to gdcm::DicomDir)
- gdcm::File *f = new gdcm::File();
- f->SetLoadMode(loadMode);
- f->SetFileName( fileName );
- bool res = f->Load();
+ if ( fileName != 0 ) // ====== Deal with a single file ======
+ {
+ // gdcm::File::IsReadable() is no usable here, because we deal with
+ // any kind of gdcm-Parsable *document*
+ // not only gdcm::File (as opposed to gdcm::DicomDir)
- if ( !res )
- {
- std::cout << "Cannot process file [" << fileName << "]" << std::endl;
- std::cout << "Either it doesn't exist, or it's read protected "
- << std::endl;
- std::cout << "or it's not a Dicom File, or its 'header' is bugged"
- << std::endl;
- std::cout << "use 'PrintFile filein=... debug' to try to guess the pb"
- << std::endl;
- delete f;
- return 0;
- }
+ gdcm::File *f = new gdcm::File();
+ f->SetLoadMode(loadMode);
+ f->SetFileName( fileName );
+ bool res = f->Load();
- gdcm::FileHelper *fh = new gdcm::FileHelper(f);
- fh->SetPrintLevel( level );
-
- fh->Print();
-
- std::cout << "\n\n" << std::endl;
-
- std::cout <<std::endl;
- std::cout <<" dataSize " << fh->GetImageDataSize() << std::endl;
- std::cout <<" dataSizeRaw " << fh->GetImageDataRawSize() << std::endl;
-
- int nX,nY,nZ,sPP,planarConfig;
- std::string pixelType;
- nX=f->GetXSize();
- nY=f->GetYSize();
- nZ=f->GetZSize();
- std::cout << " DIMX=" << nX << " DIMY=" << nY << " DIMZ=" << nZ << std::endl;
-
- pixelType = f->GetPixelType();
- sPP = f->GetSamplesPerPixel();
- planarConfig = f->GetPlanarConfiguration();
-
- std::cout << " pixelType= [" << pixelType
- << "] SamplesPerPixel= [" << sPP
- << "] PlanarConfiguration= [" << planarConfig
- << "] "<< std::endl
- << " PhotometricInterpretation= ["
+ if ( !res )
+ {
+ std::cout << "Cannot process file [" << fileName << "]" << std::endl;
+ std::cout << "Either it doesn't exist, or it's read protected "
+ << std::endl;
+ std::cout << "or it's not a Dicom File, or its 'header' is bugged"
+ << std::endl;
+ std::cout << "use 'PrintFile filein=... debug' to try to guess the pb"
+ << std::endl;
+ delete f;
+ return 0;
+ }
+
+ gdcm::FileHelper *fh = new gdcm::FileHelper(f);
+ fh->SetPrintLevel( level );
+
+ fh->Print();
+
+ std::cout << "\n\n" << std::endl;
+
+ std::cout <<std::endl;
+ std::cout <<" dataSize " << fh->GetImageDataSize() << std::endl;
+ std::cout <<" dataSizeRaw " << fh->GetImageDataRawSize() << std::endl;
+
+ int nX,nY,nZ,sPP,planarConfig;
+ std::string pixelType;
+ nX=f->GetXSize();
+ nY=f->GetYSize();
+ nZ=f->GetZSize();
+ std::cout << " DIMX=" << nX << " DIMY=" << nY << " DIMZ=" << nZ << std::endl;
+
+ pixelType = f->GetPixelType();
+ sPP = f->GetSamplesPerPixel();
+ planarConfig = f->GetPlanarConfiguration();
+
+ std::cout << " pixelType= [" << pixelType
+ << "] SamplesPerPixel= [" << sPP
+ << "] PlanarConfiguration= [" << planarConfig
+ << "] "<< std::endl
+ << " PhotometricInterpretation= ["
<< f->GetEntryValue(0x0028,0x0004)
- << "] "<< std::endl;
+ << "] "<< std::endl;
- int numberOfScalarComponents=f->GetNumberOfScalarComponents();
- std::cout << " NumberOfScalarComponents = " << numberOfScalarComponents
- <<std::endl
- << " LUT = " << (f->HasLUT() ? "TRUE" : "FALSE")
- << std::endl;
+ int numberOfScalarComponents=f->GetNumberOfScalarComponents();
+ std::cout << " NumberOfScalarComponents = " << numberOfScalarComponents
+ <<std::endl
+ << " LUT = " << (f->HasLUT() ? "TRUE" : "FALSE")
+ << std::endl;
- if ( f->GetEntryValue(0x0002,0x0010) == gdcm::GDCM_NOTLOADED )
- {
- std::cout << "Transfer Syntax not loaded. " << std::endl
- << "Better you increase MAX_SIZE_LOAD_ELEMENT_VALUE"
+ if ( f->GetEntryValue(0x0002,0x0010) == gdcm::GDCM_NOTLOADED )
+ {
+ std::cout << "Transfer Syntax not loaded. " << std::endl
+ << "Better you increase MAX_SIZE_LOAD_ELEMENT_VALUE"
<< std::endl;
- return 0;
- }
+ return 0;
+ }
- std::string transferSyntaxName = f->GetTransferSyntaxName();
- std::cout << " TransferSyntaxName= [" << transferSyntaxName << "]"
- << std::endl;
- std::cout << " SwapCode= " << f->GetSwapCode() << std::endl;
-
- //std::cout << "\n\n" << std::endl;
- //std::cout << "X spacing " << f->GetXSpacing() << std::endl;
- //std::cout << "Y spacing " << f->GetYSpacing() << std::endl;
- //std::cout << "Z spacing " << f->GetZSpacing() << std::endl;
-
- // Display the LUT as an int array (for debugging purpose)
- if ( f->HasLUT() && showlut )
- {
- uint8_t* lutrgba = fh->GetLutRGBA();
- if ( lutrgba == 0 )
+ std::string transferSyntaxName = f->GetTransferSyntaxName();
+ std::cout << " TransferSyntaxName= [" << transferSyntaxName << "]"
+ << std::endl;
+ std::cout << " SwapCode= " << f->GetSwapCode() << std::endl;
+
+ //std::cout << "\n\n" << std::endl;
+ //std::cout << "X spacing " << f->GetXSpacing() << std::endl;
+ //std::cout << "Y spacing " << f->GetYSpacing() << std::endl;
+ //std::cout << "Z spacing " << f->GetZSpacing() << std::endl;
+
+ // Display the LUT as an int array (for debugging purpose)
+ if ( f->HasLUT() && showlut )
{
- std::cout << "Lut RGBA (Palette Color) not built " << std::endl;
+ uint8_t* lutrgba = fh->GetLutRGBA();
+ if ( lutrgba == 0 )
+ {
+ std::cout << "Lut RGBA (Palette Color) not built " << std::endl;
- // Nothing is written yet to get LUT Data user friendly
- // The following is to be moved into a PixelRedaConvert method
+ // Nothing is written yet to get LUT Data user friendly
+ // The following is to be moved into a PixelRedaConvert method
- gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
- if ( modLutSeq !=0 )
- {
- gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
- if ( !sqi )
+ gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
+ if ( modLutSeq !=0 )
{
- std::string lutDescriptor = sqi->GetEntryValue(0x0028,0x3002);
- int length; // LUT length in Bytes
- int deb; // Subscript of the first Lut Value
- int nbits; // Lut item size (in Bits)
- int nbRead; // nb of items in LUT descriptor (must be = 3)
-
- nbRead = sscanf( lutDescriptor.c_str(),
- "%d\\%d\\%d",
- &length, &deb, &nbits );
- if ( nbRead != 3 )
+ gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
+ if ( !sqi )
{
- //gdcmWarningMacro( "Wrong LUT descriptor" );
- std::cout << "Wrong LUT descriptor" << std::endl;
- }
- gdcm::BinEntry *b = sqi->GetBinEntry(0x0028,0x3006);
- if ( b != 0 )
- {
- if ( b->GetLength() != 0 )
+ std::string lutDescriptor = sqi->GetEntryValue(0x0028,0x3002);
+ int length; // LUT length in Bytes
+ int deb; // Subscript of the first Lut Value
+ int nbits; // Lut item size (in Bits)
+ int nbRead; // nb of items in LUT descriptor (must be = 3)
+
+ nbRead = sscanf( lutDescriptor.c_str(),
+ "%d\\%d\\%d",
+ &length, &deb, &nbits );
+ if ( nbRead != 3 )
{
- std::cout << "---------------------------------------"
+ //gdcmWarningMacro( "Wrong LUT descriptor" );
+ std::cout << "Wrong LUT descriptor" << std::endl;
+ }
+ gdcm::BinEntry *b = sqi->GetBinEntry(0x0028,0x3006);
+ if ( b != 0 )
+ {
+ if ( b->GetLength() != 0 )
+ {
+ std::cout << "---------------------------------------"
<< " We should never reach this point "
<< std::endl;
- //LoadEntryBinArea(b); //LUT Data (CTX dependent)
- }
- }
- }
- }
+ //LoadEntryBinArea(b); //LUT Data (CTX dependent)
+ }
+ }
+ }
+ }
+ else
+ std::cout << "No LUT Data (0x0028,0x3000) found " << std::endl;
+ }
else
- std::cout << "No LUT Data (0x0028,0x3000) found " << std::endl;
- }
- else
- {
- if ( fh->GetLutItemSize() == 8 )
{
- for (int i=0;i<fh->GetLutItemNumber();i++)
- std::cout << i << " : \t"
+ if ( fh->GetLutItemSize() == 8 )
+ {
+ for (int i=0;i<fh->GetLutItemNumber();i++)
+ std::cout << i << " : \t"
<< (int)(lutrgba[i*4]) << " "
<< (int)(lutrgba[i*4+1]) << " "
<< (int)(lutrgba[i*4+2]) << std::endl;
- }
- else // LutItemSize assumed to be = 16
- {
- uint16_t* lutrgba16 = (uint16_t*)lutrgba;
- for (int i=0;i<fh->GetLutItemNumber();i++)
- std::cout << i << " : \t"
+ }
+ else // LutItemSize assumed to be = 16
+ {
+ uint16_t* lutrgba16 = (uint16_t*)lutrgba;
+ for (int i=0;i<fh->GetLutItemNumber();i++)
+ std::cout << i << " : \t"
<< (int)(lutrgba16[i*4]) << " "
<< (int)(lutrgba16[i*4+1]) << " "
<< (int)(lutrgba16[i*4+2]) << std::endl;
+ }
}
}
+ else if (showlut)
+ {
+ std::cout << "Try LUT Data "<< std::endl;
+ ShowLutData(f);
+ }
+
+ if (f->IsReadable())
+ std::cout <<std::endl<<fileName<<" is Readable"<<std::endl;
+ else
+ std::cout <<std::endl<<fileName<<" is NOT Readable"<<std::endl;
+ std::cout<<std::flush;
+ delete f;
+ delete fh;
+ return 0;
}
- else if (showlut)
+ else // ====== Deal with a Directory ======
{
- std::cout << "Try LUT Data "<< std::endl;
- ShowLutData(f);
+ std::cout << "dirName [" << dirName << "]" << std::endl;
+ gdcm::DirList dirList(dirName,1); // gets recursively the file list
+ gdcm::DirListType fileList = dirList.GetFilenames();
+ gdcm::File *f;
+ bool res;
+ for( gdcm::DirListType::iterator it = fileList.begin();
+ it != fileList.end();
+ ++it )
+ {
+ f = new gdcm::File();
+ f->SetLoadMode(loadMode);
+ f->SetFileName( it->c_str() );
+ res = f->Load();
+
+ if ( !res )
+ {
+ std::cout << "Cannot process file [" << it->c_str() << "]"
+ << std::endl;
+ std::cout << "Either it doesn't exist, or it's read protected "
+ << std::endl;
+ std::cout << "or it's not a Dicom File, or its 'header' is bugged"
+ << std::endl;
+ std::cout << "use 'PrintFile filein=... debug' to try to guess the pb"
+ << std::endl;
+ delete f;
+ continue;
+ }
+
+ gdcm::FileHelper *fh = new gdcm::FileHelper(f);
+ fh->SetPrintLevel( level );
+
+ fh->Print();
+
+ if (f->IsReadable())
+ std::cout <<std::endl<<it->c_str()<<" is Readable"<<std::endl;
+ else
+ std::cout <<std::endl<<it->c_str()<<" is NOT Readable"<<std::endl;
+ std::cout << "\n\n" << std::endl;
+ delete f;
+ delete fh;
+ }
+ std::cout<<std::flush;
}
-
- if (f->IsReadable())
- std::cout <<std::endl<<fileName<<" is Readable"<<std::endl;
- else
- std::cout <<std::endl<<fileName<<" is NOT Readable"<<std::endl;
- std::cout<<std::flush;
- delete f;
- delete fh;
- return 0;
}
git://git.creatis.insa-lyon.fr / gdcm.git / commitdiff