"set cino={.5s,e-.5s,^-.5s
set shiftwidth=2
-set makeprg=${HOME}/workspace/cvs/clitk3/fast_make.sh
+set makeprg=${HOME}/clitk3/fast_make.sh
set grepprg=clgrep
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 11 Jan 2009 10.35
-Package "clitk"
-Version "Register 2 images using optimized BLUT FFD..."
+package "clitk"
+version "Register 2 images using optimized BLUT FFD..."
option "config" - "Config file" string no
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 15 July 2008 16.35
-Package "clitk"
-Version "Register 2 images using optimized ITK FFD (high memory requirements) or BLUT FFD. Both implementations are provided, mainly for debugging purposes.."
+package "clitk"
+version "Register 2 images using optimized ITK FFD (high memory requirements) or BLUT FFD. Both implementations are provided, mainly for debugging purposes.."
option "config" - "Config file" string no
#File clitkBSplinePyramid.ggo
-Package "clitkBSplinePyramid"
+package "clitkBSplinePyramid"
version "1.0"
purpose "Down (or Up) sample with a factor 2 using Bspline pyramids. BSplineDownsampleImageFilter is BUGGED! See the ITK post of jvdmb@hotmail.com."
#File clitkCalculateTRE.ggo
-Package "clitkCalculateTRE"
+package "clitkCalculateTRE"
version "1.0"
purpose "Calculate TRE: give a reference point list and 1 or more target point lists. In case of the latter, the number of DVF (or the size of the 4th D) given should match the number of lists. Use --shipFirst to skip the first phase of a 4D DVF. General summarizes for all points (mean, SD, max) in magnitude and par component. Tre and warp gives all values for all points. "
#File clitkConvertBSplineDeformableTransformToVF.ggo
-Package "clitkConvertBSplineDeformableTransformToVF"
+package "clitkConvertBSplineDeformableTransformToVF"
version "1.0"
purpose "Convert a BSpline transform to a DVF with given properties"
#File clitkConvertPointList.ggo
-Package "clitkConvertPointList"
+package "clitkConvertPointList"
version "1.0"
purpose "Convert IX point pair lists (generated using the software described in Murphy2008,MICCAI) to a vv point pair lists"
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 13 Februari 2009 16.35
-Package "clitk"
-Version "Apply Demons registration between (2D or 3D) images..."
+package "clitk"
+version "Apply Demons registration between (2D or 3D) images..."
option "config" - "Config file" string no
#File clitkMatrixTransformToVF.ggo
-Package "clitkMatrixTransformToVF"
+package "clitkMatrixTransformToVF"
version "1.0"
purpose "Convert a matrix to a DVF with given properties"
#File clitkMultiResolutionPyramid.ggo
-Package "clitkMultiResolutionPyramid"
+package "clitkMultiResolutionPyramid"
version "1.0"
purpose "Compute the multi-resolution (MR) image pyramid. The conventional filter will also modify the image at the original resolution, the recursive not. The spatio-temporal filters leave the last dimension untouched."
#File clitkPointTrajectory.ggo
-Package "clitkPointTrajectory"
+package "clitkPointTrajectory"
version "1.0"
purpose "Compute the cyclic trajectory of a point based input transform. The transform can be given by N lists of (manually identified) landmarks, a 4DDVF or a ST transform. Interpolation is performed between "
#File clitkResampleBSplineDeformableTransform.ggo
-Package "clitkResampleBSplineDeformableTransform"
+package "clitkResampleBSplineDeformableTransform"
version "1.0"
purpose "Resample the B-spline control point grid to given properties. Coefficients are resampled to values with the desired properties and reconverted to coefficients "
#File clitkSelectPoints.ggo
-Package "clitkSelectPoints"
+package "clitkSelectPoints"
version "1.0"
purpose "Perform a selection of points on the reference and target lists of points, based on criteria applied to the reference list."
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 15 Jan 2009 10.35
-Package "clitk"
-Version "Deform a volume to match a temporal sequence using a spatio-temporal deformation model. By setting the shape of the model, you modify the temporal constraints applied to the cyclic trajectory model."
+package "clitk"
+version "Deform a volume to match a temporal sequence using a spatio-temporal deformation model. By setting the shape of the model, you modify the temporal constraints applied to the cyclic trajectory model."
option "config" - "Config file" string no
#File clitkBSplineCoefficientsToValues.ggo
-Package "clitkBSplineCoefficientsToValues"
+package "clitkBSplineCoefficientsToValues"
version "1.0"
purpose ""
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 24 February 2009 16.35
-Package "clitk"
-Version "Back project a 2D image with cone-beam geometry"
+package "clitk"
+version "Back project a 2D image with cone-beam geometry"
option "config" - "Config file" string no
#File clitkChangeImageOrientation.ggo
-Package "clitkChangeImageOrientation"
+package "clitkChangeImageOrientation"
version "1.0"
purpose ""
#File clitkCombineImage.ggo
-Package "clitkCombineImage"
+package "clitkCombineImage"
version "1.0"
purpose ""
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 20 August 16.35
-Package "clitk"
-Version "Read two vector fields (.mhd, .vf, ..) and compose them using linear interpolation"
+package "clitk"
+version "Read two vector fields (.mhd, .vf, ..) and compose them using linear interpolation"
option "config" - "Config file" string no
option "input1" i "Input1 VF filename" string yes
#File clitkConeBeamProjectImage.ggo
-Package "clitk"
-Version "Project a 3D image with cone-beam geometry"
+package "clitk"
+version "Project a 3D image with cone-beam geometry"
option "config" - "Config file" string no
#File clitkCropImage.ggo
-Package "clitkCropImage"
+package "clitkCropImage"
version "1.0"
purpose "Reduce the image size by removing regions at the lower and upper end."
# file clitkDicomRTStructInfo.ggo
-Package "clitk"
+package "clitk"
version "Read and print DICOM RT Structure set file (contours)"
option "config" - "Config file" string no
#File clitkExtractSlice.ggo
-Package "clitkExtractSlice"
+package "clitkExtractSlice"
version "1.0"
purpose "Extract a slice: will collapse the dimension given by axe, retaining only the index given by slice."
#File clitkFilter.ggo
-Package "clitkFilter"
+package "clitkFilter"
version "1.0"
purpose ""
#File clitkFlipImage.ggo
-Package "clitkFlipImage"
+package "clitkFlipImage"
version "1.0"
purpose ""
#File clitkGetDirection.ggo
-Package "clitkGetDirection"
+package "clitkGetDirection"
version "1.0"
purpose ""
#File clitkGetOrigin.ggo
-Package "clitkGetOrigin"
+package "clitkGetOrigin"
version "1.0"
purpose ""
#File clitkGetSize.ggo
-Package "clitkGetSize"
+package "clitkGetSize"
version "1.0"
purpose ""
#File clitkGetSpacing.ggo
-Package "clitkGetSpacing"
+package "clitkGetSpacing"
version "1.0"
purpose ""
# file clitkImageLog.ggo
-Package "clitk"
+package "clitk"
version "Perform a inverse normalized log on the image"
option "config" - "Config file" string no
#File clitkImageMoment.ggo
-Package "clitkImageMoment"
+package "clitkImageMoment"
version "1.0"
purpose "Calculate the image moment: the center of gravity"
#File clitkImageStatistics.ggo
-Package "clitkImageStatistics"
+package "clitkImageStatistics"
version "1.0"
purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s)"
#File clitkImageToVectorImage.ggo
-Package "clitkImageToVectorImage"
+package "clitkImageToVectorImage"
version "1.0"
purpose "Compose 3 images to 1 vector image"
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 13 August 19.35
-Package "clitk"
-Version "Read an Image (short, char or float; 2D or 3D) and a vector field (float, 2D or 3D) and deform the input through backward or forward mapping."
+package "clitk"
+version "Read an Image (short, char or float; 2D or 3D) and a vector field (float, 2D or 3D) and deform the input through backward or forward mapping."
option "config" - "Config file" string no
option "verbose" v "Verbose" flag off
#Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
#Date : Tue 15 June 16.35
-Package "clitk"
-Version "Read a series a nD images (unnamed inputs) and merge them to a (n+1)D image"
+package "clitk"
+version "Read a series a nD images (unnamed inputs) and merge them to a (n+1)D image"
option "config" - "Config file" string no
option "spacing" s "Spacing for the new dimension" double no default="1"
#File clitkMirrorPadImage.ggo
-Package "clitkMirrorPadImage"
+package "clitkMirrorPadImage"
version "1.0"
purpose ""
#File clitkPermuteAxes.ggo
-Package "clitkPermuteAxes"
+package "clitkPermuteAxes"
version "1.0"
purpose ""
#File clitkSetDirection.ggo
-Package "clitkSetDirection"
+package "clitkSetDirection"
version "1.0"
purpose ""
#File clitkSetOrigin.ggo
-Package "clitkSetOrigin"
+package "clitkSetOrigin"
version "1.0"
purpose "Set the origin field of a generic image"
#File clitkSetSpacing.ggo
-Package "clitkSetSpacing"
+package "clitkSetSpacing"
version "1.0"
purpose ""
#File clitkVFConvert.ggo
-Package "clitkVFConvert"
+package "clitkVFConvert"
version "1.0"
purpose "Convert file format"
#File clitkValuesToBSplineCoefficients.ggo
-Package "clitkValuesToBSplineCoefficients"
+package "clitkValuesToBSplineCoefficients"
version "1.0"
purpose ""
#File clitkVectorImageToImage.ggo
-Package "clitkVectorImageToImage"
+package "clitkVectorImageToImage"
version "1.0"
purpose "Extract a component image from a vector image"