ggo correction

diff --git a/tools/clitkAffineTransform.ggo b/tools/clitkAffineTransform.ggo
index ac8c2d0..ba03536 100644 (file)
--- a/tools/clitkAffineTransform.ggo
+++ b/tools/clitkAffineTransform.ggo
@@ -1,5 +1,5 @@
 #File clitkAffineTransform.ggo
-Package "clitkAffineTransform"
+package "clitkAffineTransform"
 version "1.0"
 purpose "Resample with or without affine transform of 2D, 3D, 4D images or vector fields"
 

diff --git a/tools/clitkAverageTemporalDimension.ggo b/tools/clitkAverageTemporalDimension.ggo
index f8b3342..1e2d917 100644 (file)
--- a/tools/clitkAverageTemporalDimension.ggo
+++ b/tools/clitkAverageTemporalDimension.ggo
@@ -1,5 +1,5 @@
 #File clitkAverageTemporalDimension.ggo
-Package "clitkAverageTemporalDimension"
+package "clitkAverageTemporalDimension"
 version "1.0"
 purpose "Average the last dimension to an (n-1)D image. Input is either nD or multiple (n-1)D image or DVF"
 

diff --git a/tools/clitkDicomInfo.ggo b/tools/clitkDicomInfo.ggo
index 02351ea..27786a4 100644 (file)
--- a/tools/clitkDicomInfo.ggo
+++ b/tools/clitkDicomInfo.ggo
@@ -1,5 +1,5 @@
 # file DicomInfos.ggo
-Package "clitk"
+package "clitk"
 version "read and print Dicom header"
 
 option "config"                 -      "Config file"            string         no

diff --git a/tools/clitkGuerreroVentilation.ggo b/tools/clitkGuerreroVentilation.ggo
index 26a4ff8..9dfdbda 100644 (file)
--- a/tools/clitkGuerreroVentilation.ggo
+++ b/tools/clitkGuerreroVentilation.ggo
@@ -1,5 +1,5 @@
 #File  clitkGuerreroVentilation.ggo
-Package "clitkGuerreroVentilation"
+package "clitkGuerreroVentilation"
 version "1.0"
 purpose "Compute the ventilation image from a motion compensated image and the reference (end-expiration) image"
 

diff --git a/tools/clitkImageArithm.ggo b/tools/clitkImageArithm.ggo
index d3d5ef6..69a7aba 100644 (file)
--- a/tools/clitkImageArithm.ggo
+++ b/tools/clitkImageArithm.ggo
@@ -1,5 +1,5 @@
 #File  clitkImageArithm.ggo
-Package "clitkImageArithm"
+package "clitkImageArithm"
 version "1.0"
 purpose "Perform an arithmetic operation (+-*/ ...) using two images or using an image and a scalar value."
 

diff --git a/tools/clitkImageConvert.ggo b/tools/clitkImageConvert.ggo
index e3c7507..22e3291 100644 (file)
--- a/tools/clitkImageConvert.ggo
+++ b/tools/clitkImageConvert.ggo
@@ -1,5 +1,5 @@
 # file clitkImageConvert.ggo
-Package "clitkImageConvert"
+package "clitkImageConvert"
 version "1.0"
 purpose "Convert an image into another image.\n\tAllow to change the file format and/or the pixel type. \n\tKnown file formats 2D: jpeg png bmp tif mhd hdr vox dcm \n\tKnown file formats 3D: mhd vox hdr dcm\n\tKnown file formats 4D: mhd \n\tKnown images: 2D 3D or 4D, schar, uchar, short, ushort, int, float and double \nYou can also specify multiple inputs (i.e. \"-i a.mhd,b.mhd,c.mhd\" or \"a.mhd b.mhd ...\" without the '-i' option) having the same size and dimension to build a (n+1)D image."
 

diff --git a/tools/clitkImageCreate.ggo b/tools/clitkImageCreate.ggo
index 6ba482c..f197de7 100644 (file)
--- a/tools/clitkImageCreate.ggo
+++ b/tools/clitkImageCreate.ggo
@@ -1,5 +1,5 @@
 #File  clitkImageCreate.ggo
-Package "clitkImageCreate"
+package "clitkImageCreate"
 version "1.0"
 purpose "Create a new singled value filled image (pixeltype is float, use clitkImageConvert to change)."
 

diff --git a/tools/clitkImageExtractLine.ggo b/tools/clitkImageExtractLine.ggo
index 917c7aa..988c0f5 100644 (file)
--- a/tools/clitkImageExtractLine.ggo
+++ b/tools/clitkImageExtractLine.ggo
@@ -1,5 +1,5 @@
 #File clitkImageExtractLine.ggo
-Package "clitkImageExtractLine"
+package "clitkImageExtractLine"
 version "1.0"
 purpose "Extract 1D values along a line (in voxels). 3D only."
 

diff --git a/tools/clitkImageFillRegion.ggo b/tools/clitkImageFillRegion.ggo
index ebde2b9..e0baa88 100644 (file)
--- a/tools/clitkImageFillRegion.ggo
+++ b/tools/clitkImageFillRegion.ggo
@@ -1,5 +1,5 @@
 #File  clitkImageFillRegion.ggo
-Package "clitkImageFillRegion"
+package "clitkImageFillRegion"
 version "1.0"
 purpose "Fill a region (rectangular or ellipsoide) with a value inside an image."
 

diff --git a/tools/clitkImageInfo.ggo b/tools/clitkImageInfo.ggo
index 0c058fa..53bdc05 100644 (file)
--- a/tools/clitkImageInfo.ggo
+++ b/tools/clitkImageInfo.ggo
@@ -1,5 +1,5 @@
 # file clitkImageInfo.ggo
-Package "clitkImageInfo"
+package "clitkImageInfo"
 version "1.0"
 purpose "Display information on images."
 

diff --git a/tools/clitkImageResample.ggo b/tools/clitkImageResample.ggo
index 5d9dde5..b36e394 100644 (file)
--- a/tools/clitkImageResample.ggo
+++ b/tools/clitkImageResample.ggo
@@ -1,5 +1,5 @@
 #File clitkImageResample.ggo
-Package "clitkImageResample"
+package "clitkImageResample"
 version "1.0"
 purpose "Resample an image. You can specify the interpolation, you can apply a Gaussian filter before."
 
@@ -12,6 +12,6 @@ option "order"        b       "BSpline ordre (range 0-5)"             int     no      default="3"
 option "sampling"      s       "BLUT sampling value"                   int     no      default="30"
 option "size"          -       "Number of pixels of each coordonate"   int     no      multiple  default="0"
 option "spacing"       -       "Spacing in mm between pixels"          float   no      multiple  default="0.0"
-option "gauss"         g       "Apply Gaussian before (sigma in mm)"           float   no      multiple  default="1.0"
+option "gauss"         g       "Apply Gaussian before (sigma in mm) ; no Gaussian if not given"                float   no      multiple  default="1.0"
 option "default"       d       "Default pixel value"                   float   no      default = "0.0"
 

diff --git a/tools/clitkInvertVF.ggo b/tools/clitkInvertVF.ggo
index da3ca8b..54c1e21 100644 (file)
--- a/tools/clitkInvertVF.ggo
+++ b/tools/clitkInvertVF.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 June 16.35 
 
-Package "clitk"
-Version "Read a DVF and invert it using a linear splat to the target, or by subsumpling the input grid and matching it to the output grid"
+package "clitk"
+version "Read a DVF and invert it using a linear splat to the target, or by subsumpling the input grid and matching it to the output grid"
 
 option "config"                        -       "Config file"                                                   string          no
 option "verbose"               v       "Verbose"                                                       flag            off

diff --git a/tools/clitkSetBackground.ggo b/tools/clitkSetBackground.ggo
index c69413b..26d4d38 100644 (file)
--- a/tools/clitkSetBackground.ggo
+++ b/tools/clitkSetBackground.ggo
@@ -1,5 +1,5 @@
 #File clitkSetBackground.ggo
-Package "clitkSetBackground"
+package "clitkSetBackground"
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkSignalFilter.ggo b/tools/clitkSignalFilter.ggo
index 5067fcd..de47d83 100644 (file)
--- a/tools/clitkSignalFilter.ggo
+++ b/tools/clitkSignalFilter.ggo
@@ -1,6 +1,6 @@
 #File clitkSignalFilter.ggo
-Package "clitk"
-Version "Pass an filter on an signal"
+package "clitk"
+version "Pass an filter on an signal"
 
 option "config"                -       "Config file"                     string        no
 option "verbose"       v       "Verbose"                         flag          off

diff --git a/tools/clitkSignalMeanPositionTracking.ggo b/tools/clitkSignalMeanPositionTracking.ggo
index a1a7939..b3cb8e3 100644 (file)
--- a/tools/clitkSignalMeanPositionTracking.ggo
+++ b/tools/clitkSignalMeanPositionTracking.ggo
@@ -1,5 +1,5 @@
 #File clitkSignalMeanPositionTracking.ggo
-Package "clitkSignalMeanPositionTracking"
+package "clitkSignalMeanPositionTracking"
 version "1.0"
 purpose "See Ruan 2008, compute mean position from a signal"
 

diff --git a/tools/clitkSplitImage.ggo b/tools/clitkSplitImage.ggo
index 03d77d8..b68eddf 100644 (file)
--- a/tools/clitkSplitImage.ggo
+++ b/tools/clitkSplitImage.ggo
@@ -1,5 +1,5 @@
 #File  clitkSplitImage.ggo
-Package "clitkSplitImage"
+package "clitkSplitImage"
 version "1.0"
 purpose "Split an image into n images along a dimension"
 

diff --git a/tools/clitkVFMerge.ggo b/tools/clitkVFMerge.ggo
index 0b073c7..2e425d8 100644 (file)
--- a/tools/clitkVFMerge.ggo
+++ b/tools/clitkVFMerge.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 June 16.35 
 
-Package "clitk"
-Version "Read a bunch of vector fields (.mhd, .vf, ..) and turn them into a higher dimension vector field (.mhd, ...)"
+package "clitk"
+version "Read a bunch of vector fields (.mhd, .vf, ..) and turn them into a higher dimension vector field (.mhd, ...)"
 
 option "config"                        -       "Config file"                                                   string          no
 option "output"                o       "Output VF filename"                                            string          yes

diff --git a/tools/clitkWarpImage.ggo b/tools/clitkWarpImage.ggo
index 596c0aa..8a572c4 100644 (file)
--- a/tools/clitkWarpImage.ggo
+++ b/tools/clitkWarpImage.ggo
@@ -1,5 +1,5 @@
 #File clitkWarpImage.ggo
-Package "clitkWarpImage"
+package "clitkWarpImage"
 version "1.0"
 purpose "Warp an image. Output will have the extent (origin+ spacing*size) of the input."
 

diff --git a/tools/clitkWriteDicomSeries.ggo b/tools/clitkWriteDicomSeries.ggo
index 7885274..edf4de4 100644 (file)
--- a/tools/clitkWriteDicomSeries.ggo
+++ b/tools/clitkWriteDicomSeries.ggo
@@ -1,5 +1,5 @@
 #File clitkWriteDicomSeries.ggo
-Package "clitkWriteDicomSeries"
+package "clitkWriteDicomSeries"
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkZeroVF.ggo b/tools/clitkZeroVF.ggo
index 82c941f..f314858 100644 (file)
--- a/tools/clitkZeroVF.ggo
+++ b/tools/clitkZeroVF.ggo
@@ -2,8 +2,8 @@
 #Author: Joel Schaerer
 ##Date : Tue 15 March 16.35 
 
-Package "clitk"
-Version "Read a vector fields (.mhd, .vf, ..) and zero it"
+package "clitk"
+version "Read a vector fields (.mhd, .vf, ..) and zero it"
 
 option "config"                        -       "Config file"                                                   string          no
 option "input"                 i       "Input VF filename"                                             string          yes