ggo correction

diff --git a/tools/clitkAffineTransform.ggo b/tools/clitkAffineTransform.ggo
index ac8c2d0f2088f09fbd5fbe25ef152269cbdf5a08..ba035367e9424b5ed1779b10c3ce4326ba774cd7 100644 (file)
--- a/tools/clitkAffineTransform.ggo
+++ b/tools/clitkAffineTransform.ggo
@@ -1,5 +1,5 @@
 #File clitkAffineTransform.ggo
-Package "clitkAffineTransform"
+package "clitkAffineTransform"
 version "1.0"
 purpose "Resample with or without affine transform of 2D, 3D, 4D images or vector fields"
 

diff --git a/tools/clitkAverageTemporalDimension.ggo b/tools/clitkAverageTemporalDimension.ggo
index f8b334245c17d52d7e50310e68a27c7519d5fe45..1e2d91768d4d825af7e8642a1ffa2362db2c9479 100644 (file)
--- a/tools/clitkAverageTemporalDimension.ggo
+++ b/tools/clitkAverageTemporalDimension.ggo
@@ -1,5 +1,5 @@
 #File clitkAverageTemporalDimension.ggo
-Package "clitkAverageTemporalDimension"
+package "clitkAverageTemporalDimension"
 version "1.0"
 purpose "Average the last dimension to an (n-1)D image. Input is either nD or multiple (n-1)D image or DVF"
 

diff --git a/tools/clitkDicomInfo.ggo b/tools/clitkDicomInfo.ggo
index 02351ea7ce1c237fac447ce2d1fcf2ffee372bd2..27786a47ff23be29fa932db58789fd4046eacab9 100644 (file)
--- a/tools/clitkDicomInfo.ggo
+++ b/tools/clitkDicomInfo.ggo
@@ -1,5 +1,5 @@
 # file DicomInfos.ggo
-Package "clitk"
+package "clitk"
 version "read and print Dicom header"
 
 option "config"                 -      "Config file"            string         no

diff --git a/tools/clitkGuerreroVentilation.ggo b/tools/clitkGuerreroVentilation.ggo
index 26a4ff80171189df4d8480b344247decac7b0552..9dfdbda2731e276e5877fbe9c35648fbfdb804dd 100644 (file)
--- a/tools/clitkGuerreroVentilation.ggo
+++ b/tools/clitkGuerreroVentilation.ggo
@@ -1,5 +1,5 @@
 #File  clitkGuerreroVentilation.ggo
-Package "clitkGuerreroVentilation"
+package "clitkGuerreroVentilation"
 version "1.0"
 purpose "Compute the ventilation image from a motion compensated image and the reference (end-expiration) image"
 

diff --git a/tools/clitkImageArithm.ggo b/tools/clitkImageArithm.ggo
index d3d5ef62500d1746d8513b0dbe36dad19d0e9166..69a7abad0142803f7f91fbe92516a4c4e570fe5f 100644 (file)
--- a/tools/clitkImageArithm.ggo
+++ b/tools/clitkImageArithm.ggo
@@ -1,5 +1,5 @@
 #File  clitkImageArithm.ggo
-Package "clitkImageArithm"
+package "clitkImageArithm"
 version "1.0"
 purpose "Perform an arithmetic operation (+-*/ ...) using two images or using an image and a scalar value."
 

diff --git a/tools/clitkImageConvert.ggo b/tools/clitkImageConvert.ggo
index e3c7507edc97bb813b1045201d7d71dd831c97f5..22e32916e4f76736b312cea8f00461c62cb2ae7f 100644 (file)
--- a/tools/clitkImageConvert.ggo
+++ b/tools/clitkImageConvert.ggo
@@ -1,5 +1,5 @@
 # file clitkImageConvert.ggo
-Package "clitkImageConvert"
+package "clitkImageConvert"
 version "1.0"
 purpose "Convert an image into another image.\n\tAllow to change the file format and/or the pixel type. \n\tKnown file formats 2D: jpeg png bmp tif mhd hdr vox dcm \n\tKnown file formats 3D: mhd vox hdr dcm\n\tKnown file formats 4D: mhd \n\tKnown images: 2D 3D or 4D, schar, uchar, short, ushort, int, float and double \nYou can also specify multiple inputs (i.e. \"-i a.mhd,b.mhd,c.mhd\" or \"a.mhd b.mhd ...\" without the '-i' option) having the same size and dimension to build a (n+1)D image."
 

diff --git a/tools/clitkImageCreate.ggo b/tools/clitkImageCreate.ggo
index 6ba482ceef381d443e1aad9af94d39ae685b57f3..f197de74b44d3beb1262fa383fc5f458aff00d47 100644 (file)
--- a/tools/clitkImageCreate.ggo
+++ b/tools/clitkImageCreate.ggo
@@ -1,5 +1,5 @@
 #File  clitkImageCreate.ggo
-Package "clitkImageCreate"
+package "clitkImageCreate"
 version "1.0"
 purpose "Create a new singled value filled image (pixeltype is float, use clitkImageConvert to change)."
 

diff --git a/tools/clitkImageExtractLine.ggo b/tools/clitkImageExtractLine.ggo
index 917c7aa622e63a9bf89862486a09a0cc972ee62a..988c0f5ac235ed05ffecae499d19f821e70e4401 100644 (file)
--- a/tools/clitkImageExtractLine.ggo
+++ b/tools/clitkImageExtractLine.ggo
@@ -1,5 +1,5 @@
 #File clitkImageExtractLine.ggo
-Package "clitkImageExtractLine"
+package "clitkImageExtractLine"
 version "1.0"
 purpose "Extract 1D values along a line (in voxels). 3D only."
 

diff --git a/tools/clitkImageFillRegion.ggo b/tools/clitkImageFillRegion.ggo
index ebde2b95595043fabf8dca956bae4f4940cd943c..e0baa88aa6f8703025b48705bcf7c904ed5b30d7 100644 (file)
--- a/tools/clitkImageFillRegion.ggo
+++ b/tools/clitkImageFillRegion.ggo
@@ -1,5 +1,5 @@
 #File  clitkImageFillRegion.ggo
-Package "clitkImageFillRegion"
+package "clitkImageFillRegion"
 version "1.0"
 purpose "Fill a region (rectangular or ellipsoide) with a value inside an image."
 

diff --git a/tools/clitkImageInfo.ggo b/tools/clitkImageInfo.ggo
index 0c058face887e57f937c91e7f11350373a3149f7..53bdc05f66518eff9940be1cb1b9701503479853 100644 (file)
--- a/tools/clitkImageInfo.ggo
+++ b/tools/clitkImageInfo.ggo
@@ -1,5 +1,5 @@
 # file clitkImageInfo.ggo
-Package "clitkImageInfo"
+package "clitkImageInfo"
 version "1.0"
 purpose "Display information on images."
 

diff --git a/tools/clitkImageResample.ggo b/tools/clitkImageResample.ggo
index 5d9dde585845b600e5ae8c2f4bdc911ecda30f43..b36e3948b4d4423bda1d8fd161799673b02d1ce1 100644 (file)
--- a/tools/clitkImageResample.ggo
+++ b/tools/clitkImageResample.ggo
@@ -1,5 +1,5 @@
 #File clitkImageResample.ggo
-Package "clitkImageResample"
+package "clitkImageResample"
 version "1.0"
 purpose "Resample an image. You can specify the interpolation, you can apply a Gaussian filter before."
 
@@ -12,6 +12,6 @@ option "order"        b       "BSpline ordre (range 0-5)"             int     no      default="3"
 option "sampling"      s       "BLUT sampling value"                   int     no      default="30"
 option "size"          -       "Number of pixels of each coordonate"   int     no      multiple  default="0"
 option "spacing"       -       "Spacing in mm between pixels"          float   no      multiple  default="0.0"
-option "gauss"         g       "Apply Gaussian before (sigma in mm)"           float   no      multiple  default="1.0"
+option "gauss"         g       "Apply Gaussian before (sigma in mm) ; no Gaussian if not given"                float   no      multiple  default="1.0"
 option "default"       d       "Default pixel value"                   float   no      default = "0.0"
 

diff --git a/tools/clitkInvertVF.ggo b/tools/clitkInvertVF.ggo
index da3ca8b838728053bb067db0ada59ef696b4492e..54c1e21ab101d3b9c5f32787803812a9df476ba2 100644 (file)
--- a/tools/clitkInvertVF.ggo
+++ b/tools/clitkInvertVF.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 June 16.35 
 
-Package "clitk"
-Version "Read a DVF and invert it using a linear splat to the target, or by subsumpling the input grid and matching it to the output grid"
+package "clitk"
+version "Read a DVF and invert it using a linear splat to the target, or by subsumpling the input grid and matching it to the output grid"
 
 option "config"                        -       "Config file"                                                   string          no
 option "verbose"               v       "Verbose"                                                       flag            off

diff --git a/tools/clitkSetBackground.ggo b/tools/clitkSetBackground.ggo
index c69413b4c63bf262654b06299a6e0236016a230c..26d4d387aab0e88433fc3cefca7905590aaecc61 100644 (file)
--- a/tools/clitkSetBackground.ggo
+++ b/tools/clitkSetBackground.ggo
@@ -1,5 +1,5 @@
 #File clitkSetBackground.ggo
-Package "clitkSetBackground"
+package "clitkSetBackground"
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkSignalFilter.ggo b/tools/clitkSignalFilter.ggo
index 5067fcd0807df562d6ce9d969ad9ac264c157955..de47d83d1b05ec1d5c6195001531ffce490a673b 100644 (file)
--- a/tools/clitkSignalFilter.ggo
+++ b/tools/clitkSignalFilter.ggo
@@ -1,6 +1,6 @@
 #File clitkSignalFilter.ggo
-Package "clitk"
-Version "Pass an filter on an signal"
+package "clitk"
+version "Pass an filter on an signal"
 
 option "config"                -       "Config file"                     string        no
 option "verbose"       v       "Verbose"                         flag          off

diff --git a/tools/clitkSignalMeanPositionTracking.ggo b/tools/clitkSignalMeanPositionTracking.ggo
index a1a7939a992cfb0d6bfd8aaae82b8171b4ee0080..b3cb8e3f70c1636fe481bc4fb89a9b33219f8756 100644 (file)
--- a/tools/clitkSignalMeanPositionTracking.ggo
+++ b/tools/clitkSignalMeanPositionTracking.ggo
@@ -1,5 +1,5 @@
 #File clitkSignalMeanPositionTracking.ggo
-Package "clitkSignalMeanPositionTracking"
+package "clitkSignalMeanPositionTracking"
 version "1.0"
 purpose "See Ruan 2008, compute mean position from a signal"
 

diff --git a/tools/clitkSplitImage.ggo b/tools/clitkSplitImage.ggo
index 03d77d8cc093b7192a93839ef14f7c0e9259d670..b68eddf1123189a19810e539d16a1ddf003b1dde 100644 (file)
--- a/tools/clitkSplitImage.ggo
+++ b/tools/clitkSplitImage.ggo
@@ -1,5 +1,5 @@
 #File  clitkSplitImage.ggo
-Package "clitkSplitImage"
+package "clitkSplitImage"
 version "1.0"
 purpose "Split an image into n images along a dimension"
 

diff --git a/tools/clitkVFMerge.ggo b/tools/clitkVFMerge.ggo
index 0b073c769e770807c8dcbc6e760f552c69a0fbd6..2e425d81683bb0260925e7a684b290d71e834ab0 100644 (file)
--- a/tools/clitkVFMerge.ggo
+++ b/tools/clitkVFMerge.ggo
@@ -2,8 +2,8 @@
 #Author: Jef Vandemeulebroucke <jefvdmb@gmail.com>
 #Date : Tue 15 June 16.35 
 
-Package "clitk"
-Version "Read a bunch of vector fields (.mhd, .vf, ..) and turn them into a higher dimension vector field (.mhd, ...)"
+package "clitk"
+version "Read a bunch of vector fields (.mhd, .vf, ..) and turn them into a higher dimension vector field (.mhd, ...)"
 
 option "config"                        -       "Config file"                                                   string          no
 option "output"                o       "Output VF filename"                                            string          yes

diff --git a/tools/clitkWarpImage.ggo b/tools/clitkWarpImage.ggo
index 596c0aa871951c120a55aff9a86c7733dd42b948..8a572c4c9c6167a362e657196406511fe41d56ba 100644 (file)
--- a/tools/clitkWarpImage.ggo
+++ b/tools/clitkWarpImage.ggo
@@ -1,5 +1,5 @@
 #File clitkWarpImage.ggo
-Package "clitkWarpImage"
+package "clitkWarpImage"
 version "1.0"
 purpose "Warp an image. Output will have the extent (origin+ spacing*size) of the input."
 

diff --git a/tools/clitkWriteDicomSeries.ggo b/tools/clitkWriteDicomSeries.ggo
index 78852742e3f1c9fd60613f029f2c06c9c126d104..edf4de4d37763e0d2274d473299354d761249ece 100644 (file)
--- a/tools/clitkWriteDicomSeries.ggo
+++ b/tools/clitkWriteDicomSeries.ggo
@@ -1,5 +1,5 @@
 #File clitkWriteDicomSeries.ggo
-Package "clitkWriteDicomSeries"
+package "clitkWriteDicomSeries"
 version "1.0"
 purpose ""
 

diff --git a/tools/clitkZeroVF.ggo b/tools/clitkZeroVF.ggo
index 82c941fac8d88621019064a46995d0f4cb50ff20..f31485807a96af12856e90e93f85f3520c7d3924 100644 (file)
--- a/tools/clitkZeroVF.ggo
+++ b/tools/clitkZeroVF.ggo
@@ -2,8 +2,8 @@
 #Author: Joel Schaerer
 ##Date : Tue 15 March 16.35 
 
-Package "clitk"
-Version "Read a vector fields (.mhd, .vf, ..) and zero it"
+package "clitk"
+version "Read a vector fields (.mhd, .vf, ..) and zero it"
 
 option "config"                        -       "Config file"                                                   string          no
 option "input"                 i       "Input VF filename"                                             string          yes