+++ /dev/null
-/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
-
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
-
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
-
- It is distributed under dual licence
-
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-#ifndef CLITKIOCOMMON_CXX
-#define CLITKIOCOMMON_CXX
-/**
- =================================================
- * @file clitkIOCommon.cxx
- * @author David Sarrut <david.sarrut@creatis.insa-lyon.fr>
- * @date 18 May 2006 11:42:37
- *
- * @brief
- *
- *
- =================================================*/
-
-// clitk include
-#include "clitkImageCommon.h"
-#include <cstdlib>
-
-//====================================================================
-// Open a file for reading
-void clitk::openFileForReading(std::ifstream & is, const std::string & filename) {
- is.open(filename.c_str(), std::ios::in);
- if ( is.fail() ) {
- itkGenericExceptionMacro(<< "Could not open file (for reading): " << filename);
- }
-}
-//====================================================================
-
-//====================================================================
-// Open a file for writing
-void clitk::openFileForWriting(std::ofstream & os, const std::string & filename) {
- os.open(filename.c_str(), std::ios::out);
- if ( os.fail() ) {
- itkGenericExceptionMacro(<< "Could not open file (for writing): " << filename);
- }
-}
-//====================================================================
-
-//====================================================================
-// Read a dicom header
-gdcm::File * clitk::readDicomHeader(const std::string & filename,
- const bool verbose) {
- if (verbose) {
- std::cout << "Reading DICOM <" << filename << ">" << std::endl;
- }
- gdcm::File *header = new gdcm::File();
- header->SetFileName(filename);
- header->SetMaxSizeLoadEntry(16384); // required ?
- header->Load();
- return header;
-}
-//====================================================================
-
-//====================================================================
-itk::ImageIOBase::Pointer clitk::readImageHeader(const std::string & filename, bool exit_on_error) {
- itk::ImageIOBase::Pointer reader =
- itk::ImageIOFactory::CreateImageIO(filename.c_str(), itk::ImageIOFactory::ReadMode);
- if (!reader)
- if (exit_on_error) //default behavior for tools who don't handle the problem
- {
- std::cerr "Error reading file " << filename << ", exiting immediately" << std::endl;
- std::exit(-1);
- }
- else
- return NULL;
- reader->SetFileName(filename);
- reader->ReadImageInformation();
- return reader;
-}
-//====================================================================
-
-//====================================================================
-void clitk::printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level) {
- unsigned int dim = header->GetNumberOfDimensions();
- std::string pixelTypeName = header->GetComponentTypeAsString(header->GetComponentType());
- std::vector<int> inputSize;
- std::vector<double> inputSpacing;
- inputSize.resize(dim);
- inputSpacing.resize(dim);
- for(unsigned int i=0; i<dim; i++) {
- inputSpacing[i] = header->GetSpacing(i);
- inputSize[i] = header->GetDimensions(i);
- }
- int pixelSize =
- clitk::GetTypeSizeFromString(header->GetComponentTypeAsString(header->GetComponentType()));
- unsigned int nbOfComponents = header->GetNumberOfComponents();
- if (level == 0) {
- os << dim << "D ";
- if (nbOfComponents !=1) os << nbOfComponents << "x" << pixelTypeName;
- else os << pixelTypeName;
- os << " ";
- for(unsigned int i=0; i< dim-1; i++)
- os << inputSize[i] << "x";
- os << inputSize[dim-1]
- << " ";
- for(unsigned int i=0; i< dim-1; i++)
- os << inputSpacing[i] << "x";
- os << inputSpacing[dim-1];
- }
- else {
- os << "Dim = " << dim << "D" << std::endl;
- os << "PixelType = " << pixelTypeName << std::endl;
- if (nbOfComponents > 1)
- os << "Vector = " << nbOfComponents << std::endl;
- os << "Size = ";
- for(unsigned int i=0; i< dim; i++) {
- os << inputSize[i] << " ";
- }
- os << std::endl;
- os << "Spacing = ";
- for(unsigned int i=0; i< dim; i++) {
- os << inputSpacing[i] << " ";
- }
- os << std::endl;
- if (level > 1) {
- os << "# voxels = " << header->GetImageSizeInPixels() << std::endl;
- os << "Size (mm) = ";
- for(unsigned int i=0; i< dim; i++) {
- os << inputSize[i]*inputSpacing[i] << " ";
- }
- os << "mm" << std::endl;
- os << "Volume = ";
- double vol=1.0;
- for(unsigned int i=0; i< dim; i++) {
- vol *= inputSize[i]*inputSpacing[i]/10.0;
- }
- os << vol << " cc" << std::endl;
- int mem = header->GetImageSizeInPixels()*pixelSize*nbOfComponents;
- double memKb = (double)mem/1024.0;
- double memMb = (double)mem/1024.0/1024.0;
- double memGb = (double)mem/1024.0/1024.0/1024.0;
- if (lrint(memKb) <= 0)
- os << "Memory = " << mem << " bytes" << std::endl;
- else {
- if (lrint(memMb) <= 0)
- os << "Memory = " << memKb << " Kb (" << mem << " bytes)" << std::endl;
- else {
- if (lrint(memGb) <= 0)
- os << "Memory = " << memMb << " Mb (" << mem << " bytes)" << std::endl;
- else
- os << "Memory = " << memGb << " Gb (" << mem << " bytes)" << std::endl;
- }
- }
- }
- }
-}
-//====================================================================
-
-#endif /* end #define CLITKIO_CXX */
-
+++ /dev/null
-/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
-
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
-
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
-
- It is distributed under dual licence
-
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-#include "clitkImageCommon.h"
-
+++ /dev/null
-/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
-
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
-
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
-
- It is distributed under dual licence
-
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-#ifndef CLITKIOCOMMON_TXX
-#define CLITKIOCOMMON_TXX
-/**
- =================================================
- * @file clitkIOCommon.txx
- * @author David Sarrut <david.sarrut@creatis.insa-lyon.fr>
- * @date 04 Jul 2006 08:34:11
- *
- * @brief
- *
- *
- =================================================*/
-
-//====================================================================
-// To short the code for reading an image
-template<typename ImageType>
-typename ImageType::Pointer readImage(const std::string & filename, const bool verbose) {
- typedef itk::ImageFileReader<ImageType> ReaderType;
- typename ReaderType::Pointer reader = ReaderType::New();
- reader->SetFileName(filename.c_str());
- if (verbose) {
- std::cout << "Reading " << filename << " ..." << std::endl;
- }
- try {
- reader->Update();
- }
- catch( itk::ExceptionObject & err ) {
- std::cerr << "Error while reading " << filename
- << " " << err << std::endl;
- exit(0);
- }
- return reader->GetOutput();
-}
-//====================================================================
-
-//====================================================================
-// To short the code for reading an image from several files
-template<typename ImageType>
-typename ImageType::Pointer readImage(const std::vector<std::string> & filenames,
- const bool verbose) {
- if (filenames.size() == 1) return readImage<ImageType>(filenames[0], verbose);
- typedef itk::ImageSeriesReader<ImageType> ReaderType;
- typename ReaderType::Pointer reader = ReaderType::New();
- reader->SetFileNames(filenames);
- if (verbose) {
- std::cout << "Reading " << filenames[0] << " and others ..." << std::endl;
- }
- try {
- reader->Update();
- }
- catch( itk::ExceptionObject & err ) {
- std::cerr << "Error while reading " << filenames[0]
- << " or other files ..." << err << std::endl;
- exit(0);
- }
- return reader->GetOutput();
-}
-//====================================================================
-
-//====================================================================
-// To short the code for writing an image
-template<typename ImageType>
-void writeImage(const typename ImageType::Pointer image,
- const std::string & filename,
- const bool verbose) {
- typedef itk::ImageFileWriter<ImageType> WriterType;
- typename WriterType::Pointer writer = WriterType::New();
- writer->SetFileName(filename.c_str());
- writer->SetInput(image);
- if (verbose) {
- std::cout << "Writing " << filename << "." << std::endl;
- }
- try {
- writer->Update();
- }
- catch( itk::ExceptionObject & err ) {
- std::cerr << "Error while writing " << filename
- << ", the error is : " << err << std::endl;
- exit(0);
- }
-}
-//====================================================================
-
-#endif /* end #define CLITKIOCOMMON_TXX */
-
+++ /dev/null
-# - Find ROOT instalation
-# This module tries to find the ROOT installation on your system.
-# It tries to find the root-config script which gives you all the needed information.
-# If the system variable ROOTSYS is set this is straight forward.
-# If not the module uses the pathes given in ROOT_CONFIG_SEARCHPATH.
-# If you need an other path you should add this path to this varaible.
-# The root-config script is then used to detect basically everything else.
-# This module defines a number of key variables and macros.
-
-
-MESSAGE("Looking for Root...")
-MESSAGE(STATUS "Looking for Root...")
-
-SET(ROOT_CONFIG_SEARCHPATH
- ${SIMPATH}/tools/root/bin
- $ENV{ROOTSYS}/bin
-)
-
-SET(ROOT_DEFINITIONS "")
-
-SET(ROOT_INSTALLED_VERSION_TOO_OLD FALSE)
-
-SET(ROOT_CONFIG_EXECUTABLE ROOT_CONFIG_EXECUTABLE-NOTFOUND)
-
-FIND_PROGRAM(ROOT_CONFIG_EXECUTABLE NAMES root-config PATHS
- ${ROOT_CONFIG_SEARCHPATH}
- NO_SYSTEM_ENVIRONMENT_PATH)
-
-IF (${ROOT_CONFIG_EXECUTABLE} MATCHES "ROOT_CONFIG_EXECUTABLE-NOTFOUND")
- MESSAGE( FATAL_ERROR "ROOT not installed in the searchpath and ROOTSYS is not set. Please
- set ROOTSYS or add the path to your ROOT installation in the Macro FindROOT.cmake in the
- subdirectory cmake/modules.")
-ELSE (${ROOT_CONFIG_EXECUTABLE} MATCHES "ROOT_CONFIG_EXECUTABLE-NOTFOUND")
- MESSAGE("root-config found")
- STRING(REGEX REPLACE "(^.*)/bin/root-config" "\\1" test ${ROOT_CONFIG_EXECUTABLE})
- SET( ENV{ROOTSYS} ${test})
- set( ROOTSYS ${test})
-ENDIF (${ROOT_CONFIG_EXECUTABLE} MATCHES "ROOT_CONFIG_EXECUTABLE-NOTFOUND")
-
-
-IF (ROOT_CONFIG_EXECUTABLE)
-
- SET(ROOT_FOUND FALSE)
-
- EXEC_PROGRAM(${ROOT_CONFIG_EXECUTABLE} ARGS "--version" OUTPUT_VARIABLE ROOTVERSION)
-
- MESSAGE(STATUS "Looking for Root... - found $ENV{ROOTSYS}/bin/root")
- MESSAGE(STATUS "Looking for Root... - version ${ROOTVERSION} ")
-
- MESSAGE( "Looking for Root... - found $ENV{ROOTSYS}/bin/root")
- MESSAGE( "Looking for Root... - version ${ROOTVERSION} ")
-
- # we need at least version 5.00/00
- IF (NOT ROOT_MIN_VERSION)
- SET(ROOT_MIN_VERSION "5.00/00")
- ENDIF (NOT ROOT_MIN_VERSION)
-
- # now parse the parts of the user given version string into variables
- STRING(REGEX REPLACE "^([0-9]+)\\.[0-9][0-9]+\\/[0-9][0-9]+" "\\1" req_root_major_vers "${ROOT_MIN_VERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.([0-9][0-9])+\\/[0-9][0-9]+.*" "\\1" req_root_minor_vers "${ROOT_MIN_VERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.[0-9][0-9]+\\/([0-9][0-9]+)" "\\1" req_root_patch_vers "${ROOT_MIN_VERSION}")
-
- # and now the version string given by qmake
- STRING(REGEX REPLACE "^([0-9]+)\\.[0-9][0-9]+\\/[0-9][0-9]+.*" "\\1" found_root_major_vers "${ROOTVERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.([0-9][0-9])+\\/[0-9][0-9]+.*" "\\1" found_root_minor_vers "${ROOTVERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.[0-9][0-9]+\\/([0-9][0-9]+).*" "\\1" found_root_patch_vers "${ROOTVERSION}")
-
- IF (found_root_major_vers LESS 5)
- MESSAGE( FATAL_ERROR "Invalid ROOT version \"${ROOTERSION}\", at least major version 4 is required, e.g. \"5.00/00\"")
- ENDIF (found_root_major_vers LESS 5)
-
- # compute an overall version number which can be compared at once
- MATH(EXPR req_vers "${req_root_major_vers}*10000 + ${req_root_minor_vers}*100 + ${req_root_patch_vers}")
- MATH(EXPR found_vers "${found_root_major_vers}*10000 + ${found_root_minor_vers}*100 + ${found_root_patch_vers}")
-
- IF (found_vers LESS req_vers)
- SET(ROOT_FOUND FALSE)
- SET(ROOT_INSTALLED_VERSION_TOO_OLD TRUE)
- ELSE (found_vers LESS req_vers)
- SET(ROOT_FOUND TRUE)
- ENDIF (found_vers LESS req_vers)
-
-ENDIF (ROOT_CONFIG_EXECUTABLE)
-
-MESSAGE("root found = "${ROOT_FOUND})
-
-IF (ROOT_FOUND)
-
- # ask root-config for the library dir
- # Set ROOT_LIBRARY_DIR
-
- EXEC_PROGRAM( ${ROOT_CONFIG_EXECUTABLE}
- ARGS "--libdir"
- OUTPUT_VARIABLE ROOT_LIBRARY_DIR_TMP )
-
- IF(EXISTS "${ROOT_LIBRARY_DIR_TMP}")
- SET(ROOT_LIBRARY_DIR ${ROOT_LIBRARY_DIR_TMP} )
- ELSE(EXISTS "${ROOT_LIBRARY_DIR_TMP}")
- MESSAGE("Warning: ROOT_CONFIG_EXECUTABLE reported ${ROOT_LIBRARY_DIR_TMP} as library path,")
- MESSAGE("Warning: but ${ROOT_LIBRARY_DIR_TMP} does NOT exist, ROOT must NOT be installed correctly.")
- ENDIF(EXISTS "${ROOT_LIBRARY_DIR_TMP}")
-
- # ask root-config for the binary dir
- EXEC_PROGRAM(${ROOT_CONFIG_EXECUTABLE}
- ARGS "--bindir"
- OUTPUT_VARIABLE root_bins )
- SET(ROOT_BINARY_DIR ${root_bins})
-
- # ask root-config for the include dir
- EXEC_PROGRAM( ${ROOT_CONFIG_EXECUTABLE}
- ARGS "--incdir"
- OUTPUT_VARIABLE root_headers )
- SET(ROOT_INCLUDE_DIR ${root_headers})
- # CACHE INTERNAL "")
-
- # ask root-config for the library varaibles
- EXEC_PROGRAM( ${ROOT_CONFIG_EXECUTABLE}
-# ARGS "--noldflags --noauxlibs --libs"
- ARGS "--glibs"
- OUTPUT_VARIABLE root_flags )
-
-# STRING(REGEX MATCHALL "([^ ])+" root_libs_all ${root_flags})
-# STRING(REGEX MATCHALL "-L([^ ])+" root_library ${root_flags})
-# REMOVE_FROM_LIST(root_flags "${root_libs_all}" "${root_library}")
-
- SET(ROOT_LIBRARIES ${root_flags})
-
- # Make variables changeble to the advanced user
- MARK_AS_ADVANCED( ROOT_LIBRARY_DIR ROOT_INCLUDE_DIR ROOT_DEFINITIONS)
-
- # Set ROOT_INCLUDES
- SET( ROOT_INCLUDES ${ROOT_INCLUDE_DIR})
-
- SET(LD_LIBRARY_PATH ${LD_LIBRARY_PATH} ${ROOT_LIBRARY_DIR})
-
- #######################################
- #
- # Check the executables of ROOT
- # ( rootcint )
- #
- #######################################
-
- FIND_PROGRAM(ROOT_CINT_EXECUTABLE
- NAMES rootcint
- PATHS ${ROOT_BINARY_DIR}
- NO_DEFAULT_PATH
- )
-
-ENDIF (ROOT_FOUND)
-
-
-MESSAGE("icici")
-
- ###########################################
- #
- # Macros for building ROOT dictionary
- #
- ###########################################
-
-MACRO (ROOT_GENERATE_DICTIONARY_OLD )
-
- set(INFILES "")
-
- foreach (_current_FILE ${ARGN})
-
- IF (${_current_FILE} MATCHES "^.*\\.h$")
- IF (${_current_FILE} MATCHES "^.*Link.*$")
- set(LINKDEF_FILE ${_current_FILE})
- ELSE (${_current_FILE} MATCHES "^.*Link.*$")
- set(INFILES ${INFILES} ${_current_FILE})
- ENDIF (${_current_FILE} MATCHES "^.*Link.*$")
- ELSE (${_current_FILE} MATCHES "^.*\\.h$")
- IF (${_current_FILE} MATCHES "^.*\\.cxx$")
- set(OUTFILE ${_current_FILE})
- ELSE (${_current_FILE} MATCHES "^.*\\.cxx$")
- set(INCLUDE_DIRS ${INCLUDE_DIRS} -I${_current_FILE})
- ENDIF (${_current_FILE} MATCHES "^.*\\.cxx$")
- ENDIF (${_current_FILE} MATCHES "^.*\\.h$")
-
- endforeach (_current_FILE ${ARGN})
-
-# MESSAGE("INFILES: ${INFILES}")
-# MESSAGE("OutFILE: ${OUTFILE}")
-# MESSAGE("LINKDEF_FILE: ${LINKDEF_FILE}")
-# MESSAGE("INCLUDE_DIRS: ${INCLUDE_DIRS}")
-
- STRING(REGEX REPLACE "(^.*).cxx" "\\1.h" bla "${OUTFILE}")
-# MESSAGE("BLA: ${bla}")
- SET (OUTFILES ${OUTFILE} ${bla})
-
- ADD_CUSTOM_COMMAND(OUTPUT ${OUTFILES}
- COMMAND ${ROOT_CINT_EXECUTABLE}
- ARGS -f ${OUTFILE} -c -DHAVE_CONFIG_H ${INCLUDE_DIRS} ${INFILES} ${LINKDEF_FILE} DEPENDS ${INFILES})
-
-# MESSAGE("ROOT_CINT_EXECUTABLE has created the dictionary ${OUTFILE}")
-
-ENDMACRO (ROOT_GENERATE_DICTIONARY_OLD)
-
- ###########################################
- #
- # Macros for building ROOT dictionary
- #
- ###########################################
-
-MACRO (ROOT_GENERATE_DICTIONARY INFILES LINKDEF_FILE OUTFILE INCLUDE_DIRS_IN)
-
- set(INCLUDE_DIRS)
-
- foreach (_current_FILE ${INCLUDE_DIRS_IN})
- set(INCLUDE_DIRS ${INCLUDE_DIRS} -I${_current_FILE})
- endforeach (_current_FILE ${INCLUDE_DIRS_IN})
-
-
-# MESSAGE("INFILES: ${INFILES}")
-# MESSAGE("OutFILE: ${OUTFILE}")
-# MESSAGE("LINKDEF_FILE: ${LINKDEF_FILE}")
-# MESSAGE("INCLUDE_DIRS: ${INCLUDE_DIRS}")
-
- STRING(REGEX REPLACE "^(.*)\\.(.*)$" "\\1.h" bla "${OUTFILE}")
-# MESSAGE("BLA: ${bla}")
- SET (OUTFILES ${OUTFILE} ${bla})
-
- ADD_CUSTOM_COMMAND(OUTPUT ${OUTFILES}
- COMMAND ${ROOT_CINT_EXECUTABLE}
- ARGS -f ${OUTFILE} -c -DHAVE_CONFIG_H ${INCLUDE_DIRS} ${INFILES} ${LINKDEF_FILE} DEPENDS ${INFILES})
-
-ENDMACRO (ROOT_GENERATE_DICTIONARY)
-
-MESSAGE("la")
\ No newline at end of file
+++ /dev/null
-# - Find ROOT instalation # This module tries to find the ROOT installation on your system.
-# It tries to find the root-config script which gives you all the needed information.
-# If the system variable ROOTSYS is set this is straight forward.
-# If not the module uses the pathes given in ROOT_CONFIG_SEARCHPATH.
-# If you need an other path you should add this path to this varaible.
-# The root-config script is then used to detect basically everything else.
-# This module defines a number of key variables and macros.
-
-
-MESSAGE(STATUS "Looking for Root...")
-
-SET(ROOT_CONFIG_SEARCHPATH
- $ENV{ROOTSYS}/bin
- )
-
-SET(ROOT_DEFINITIONS "")
-
-SET(ROOT_INSTALLED_VERSION_TOO_OLD FALSE)
-
-SET(ROOT_CONFIG_EXECUTABLE ROOT_CONFIG_EXECUTABLE-NOTFOUND)
-
-FIND_PROGRAM(ROOT_CONFIG_EXECUTABLE NAMES root-config PATHS
- ${ROOT_CONFIG_SEARCHPATH}
- NO_SYSTEM_ENVIRONMENT_PATH)
-
-FIND_FILE( RVERSION_H NAMES RVersion.h PATHS $ENV{ROOTSYS}/include )
-
-IF ( RVERSION_H )
- FILE( READ ${RVERSION_H} RVERS_CONTENT )
- STRING( REGEX MATCH "#define ROOT_RELEASE \"[^\n]+\"\n" _line "${RVERS_CONTENT}" )
- STRING( REGEX REPLACE "#define ROOT_RELEASE \"([^\n]+)\"\n" "\\1" _match "${_line}")
- IF(_match)
- SET( ROOTVERSION ${_match})
- ENDIF(_match)
-ENDIF( RVERSION_H )
-
-
-IF (ROOTVERSION)
-
- SET(ROOT_FOUND FALSE)
-
- MESSAGE(STATUS "Looking for Root... - found $ENV{ROOTSYS}/bin/root")
- MESSAGE(STATUS "Looking for Root... - version ${ROOTVERSION} ")
-
- # we need at least version 5.00/00
- IF (NOT ROOT_MIN_VERSION)
- SET(ROOT_MIN_VERSION "5.00/00")
- ENDIF (NOT ROOT_MIN_VERSION)
-
- # now parse the parts of the user given version string into variables
- STRING(REGEX REPLACE "^([0-9]+)\\.[0-9][0-9]+\\/[0-9][0-9]+" "\\1" req_root_major_vers "${ROOT_MIN_VERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.([0-9][0-9])+\\/[0-9][0-9]+.*" "\\1" req_root_minor_vers "${ROOT_MIN_VERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.[0-9][0-9]+\\/([0-9][0-9]+)" "\\1" req_root_patch_vers "${ROOT_MIN_VERSION}")
-
- # and now the version string given by qmake
- STRING(REGEX REPLACE "^([0-9]+)\\.[0-9][0-9]+\\/[0-9][0-9]+.*" "\\1" found_root_major_vers "${ROOTVERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.([0-9][0-9])+\\/[0-9][0-9]+.*" "\\1" found_root_minor_vers "${ROOTVERSION}")
- STRING(REGEX REPLACE "^[0-9]+\\.[0-9][0-9]+\\/([0-9][0-9]+).*" "\\1" found_root_patch_vers "${ROOTVERSION}")
-
- IF (found_root_major_vers LESS 5)
- MESSAGE( FATAL_ERROR "Invalid ROOT version \"${ROOTERSION}\", at least major version 4 is required, e.g. \"5.00/00\"")
- ENDIF (found_root_major_vers LESS 5)
-
- # compute an overall version number which can be compared at once
- MATH(EXPR req_vers "${req_root_major_vers}*10000 + ${req_root_minor_vers}*100 + ${req_root_patch_vers}")
- MATH(EXPR found_vers "${found_root_major_vers}*10000 + ${found_root_minor_vers}*100 + ${found_root_patch_vers}")
-
- IF (found_vers LESS req_vers)
- SET(ROOT_FOUND FALSE)
- SET(ROOT_INSTALLED_VERSION_TOO_OLD TRUE)
- ELSE (found_vers LESS req_vers)
- SET(ROOT_FOUND TRUE)
- ENDIF (found_vers LESS req_vers)
-
-ENDIF (ROOTVERSION)
-
-
-IF (ROOT_FOUND)
-
- # ask root-config for the library dir
- # Set ROOT_LIBRARY_DIR
- IF( WIN32 )
- SET( ROOT_LIBRARY_DIR $ENV{ROOTSYS}/lib )
- SET( ROOT_INCLUDE_DIR $ENV{ROOTSYS}/include )
- SET( ROOT_BINARY_DIR $ENV{ROOTSYS}/bin )
-
- ELSE( WIN32 )
-
- EXEC_PROGRAM( ${ROOT_CONFIG_EXECUTABLE}
- ARGS "--libdir"
- OUTPUT_VARIABLE ROOT_LIBRARY_DIR_TMP )
-
- IF(EXISTS "${ROOT_LIBRARY_DIR_TMP}")
- SET(ROOT_LIBRARY_DIR ${ROOT_LIBRARY_DIR_TMP} )
- ELSE(EXISTS "${ROOT_LIBRARY_DIR_TMP}")
- MESSAGE("Warning: ROOT_CONFIG_EXECUTABLE reported ${ROOT_LIBRARY_DIR_TMP} as library path,")
- MESSAGE("Warning: but ${ROOT_LIBRARY_DIR_TMP} does NOT exist, ROOT must NOT be installed correctly.")
- ENDIF(EXISTS "${ROOT_LIBRARY_DIR_TMP}")
-
- # ask root-config for the binary dir
- EXEC_PROGRAM(${ROOT_CONFIG_EXECUTABLE}
- ARGS "--bindir"
- OUTPUT_VARIABLE root_bins )
- SET(ROOT_BINARY_DIR ${root_bins})
-
- # ask root-config for the include dir
- EXEC_PROGRAM( ${ROOT_CONFIG_EXECUTABLE}
- ARGS "--incdir"
- OUTPUT_VARIABLE root_headers )
- SET(ROOT_INCLUDE_DIR ${root_headers})
- # CACHE INTERNAL "")
-
- # ask root-config for the library varaibles
- EXEC_PROGRAM( ${ROOT_CONFIG_EXECUTABLE}
- ARGS "--noldflags --noauxlibs --libs"
- OUTPUT_VARIABLE root_flags )
-
- # STRING(REGEX MATCHALL "([^ ])+" root_libs_all ${root_flags})
- # STRING(REGEX MATCHALL "-L([^ ])+" root_library ${root_flags})
- # REMOVE_FROM_LIST(root_flags "${root_libs_all}" "${root_library}")
-
- SET(ROOT_LIBRARIES ${root_flags})
-
- ENDIF( WIN32 )
-
- # Make variables changeble to the advanced user
- MARK_AS_ADVANCED( ROOT_LIBRARY_DIR ROOT_INCLUDE_DIR ROOT_DEFINITIONS)
-
- # Set ROOT_INCLUDES
- SET( ROOT_INCLUDES ${ROOT_INCLUDE_DIR})
-
- SET(LD_LIBRARY_PATH ${LD_LIBRARY_PATH} ${ROOT_LIBRARY_DIR})
-
- #######################################
- #
- # Check the executables of ROOT
- # ( rootcint )
- #
- #######################################
-
- FIND_PROGRAM(ROOT_CINT_EXECUTABLE
- NAMES rootcint
- PATHS ${ROOT_BINARY_DIR}
- NO_DEFAULT_PATH
- )
-
-ENDIF (ROOT_FOUND)
-
-
-
-###########################################
-#
-# Macros for building ROOT dictionary
-#
-###########################################
-
-MACRO (ROOT_GENERATE_DICTIONARY_OLD )
-
- set(INFILES "")
-
- foreach (_current_FILE ${ARGN})
-
- IF (${_current_FILE} MATCHES "^.*\\.h$")
- IF (${_current_FILE} MATCHES "^.*Link.*$")
- set(LINKDEF_FILE ${_current_FILE})
- ELSE (${_current_FILE} MATCHES "^.*Link.*$")
- set(INFILES ${INFILES} ${_current_FILE})
- ENDIF (${_current_FILE} MATCHES "^.*Link.*$")
- ELSE (${_current_FILE} MATCHES "^.*\\.h$")
- IF (${_current_FILE} MATCHES "^.*\\.cxx$")
- set(OUTFILE ${_current_FILE})
- ELSE (${_current_FILE} MATCHES "^.*\\.cxx$")
- set(INCLUDE_DIRS ${INCLUDE_DIRS} -I${_current_FILE})
- ENDIF (${_current_FILE} MATCHES "^.*\\.cxx$")
- ENDIF (${_current_FILE} MATCHES "^.*\\.h$")
-
- endforeach (_current_FILE ${ARGN})
-
- # MESSAGE("INFILES: ${INFILES}")
- # MESSAGE("OutFILE: ${OUTFILE}")
- # MESSAGE("LINKDEF_FILE: ${LINKDEF_FILE}")
- # MESSAGE("INCLUDE_DIRS: ${INCLUDE_DIRS}")
-
- STRING(REGEX REPLACE "(^.*).cxx" "\\1.h" bla "${OUTFILE}")
- # MESSAGE("BLA: ${bla}")
- SET (OUTFILES ${OUTFILE} ${bla})
-
- ADD_CUSTOM_COMMAND(OUTPUT ${OUTFILES}
- COMMAND ${ROOT_CINT_EXECUTABLE}
- ARGS -f ${OUTFILE} -c -DHAVE_CONFIG_H ${INCLUDE_DIRS} ${INFILES} ${LINKDEF_FILE} DEPENDS ${INFILES})
-
- # MESSAGE("ROOT_CINT_EXECUTABLE has created the dictionary ${OUTFILE}")
-
-ENDMACRO (ROOT_GENERATE_DICTIONARY_OLD)
-
-###########################################
-#
-# Macros for building ROOT dictionary
-#
-###########################################
-
-MACRO (ROOT_GENERATE_DICTIONARY INFILES LINKDEF_FILE OUTFILE INCLUDE_DIRS_IN)
-
- set(INCLUDE_DIRS)
-
- foreach (_current_FILE ${INCLUDE_DIRS_IN})
- set(INCLUDE_DIRS ${INCLUDE_DIRS} -I${_current_FILE})
- endforeach (_current_FILE ${INCLUDE_DIRS_IN})
-
-
- # MESSAGE("INFILES: ${INFILES}")
- # MESSAGE("OutFILE: ${OUTFILE}")
- # MESSAGE("LINKDEF_FILE: ${LINKDEF_FILE}")
- # MESSAGE("INCLUDE_DIRS: ${INCLUDE_DIRS}")
-
- STRING(REGEX REPLACE "^(.*)\\.(.*)$" "\\1.h" bla "${OUTFILE}")
- # MESSAGE("BLA: ${bla}")
- SET (OUTFILES ${OUTFILE} ${bla})
-
- ADD_CUSTOM_COMMAND(OUTPUT ${OUTFILES}
- COMMAND ${ROOT_CINT_EXECUTABLE}
- ARGS -f ${OUTFILE} -c -DHAVE_CONFIG_H ${INCLUDE_DIRS} ${INFILES} ${LINKDEF_FILE} DEPENDS ${INFILES})
-
-ENDMACRO (ROOT_GENERATE_DICTIONARY)
-
+++ /dev/null
-#=========================================================
-# Find ggo (gengetopt) files (http://www.gnu.org/software/gengetopt/)
-FILE(GLOB ALL_GGO_FILES *.ggo)
-#MESSAGE(${ALL_GGO_FILES})
-
-FOREACH(GGO_FILE ${ALL_GGO_FILES})
- # MESSAGE(input=${GGO_FILE})
- STRING(REGEX REPLACE "(.*).ggo"
- "\\1" GGO_BASENAME
- "${GGO_FILE}")
- #MESSAGE( base= ${GGO_BASENAME})
- SET(GGO_H ${GGO_BASENAME}_ggo.h)
- #MESSAGE(${GGO_H})
- SET(GGO_C ${GGO_BASENAME}_ggo.c)
- #MESSAGE(${GGO_C})
- SET(GGO_OUTPUT ${GGO_H} ${GGO_C})
- ADD_CUSTOM_COMMAND(OUTPUT ${GGO_OUTPUT}
- COMMAND gengetopt
- ARGS < ${GGO_FILE} --file-name=${GGO_BASENAME}_ggo -u --conf-parser
- DEPENDS ${GGO_FILE}
- )
- ENDFOREACH(GGO_FILE)
-
-#=========================================================
-SET(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/bin/)
-SET(LIBRARY_OUTPUT_PATH ${PROJECT_BINARY_DIR}/lib)
-LINK_DIRECTORIES(${PROJECT_BINARY_DIR}/lib)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/base)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/grid)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/gridtools)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/signal)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/pose)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/shearwarp)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/synergy)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/reconstruction)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/register)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/deformableregistration)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/ilr/optim)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/common)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/tests)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/tools)
-#=========================================================
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff