WRAP_GGO(clitkValuesToBSplineCoefficients_GGO_C clitkValuesToBSplineCoefficients.ggo)
ADD_EXECUTABLE(clitkValuesToBSplineCoefficients clitkValuesToBSplineCoefficients.cxx clitkValuesToBSplineCoefficientsGenericFilter.cxx ${clitkValuesToBSplineCoefficients_GGO_C})
TARGET_LINK_LIBRARIES(clitkValuesToBSplineCoefficients clitkCommon ITKIO)
+
+ WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
+ ADD_EXECUTABLE(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMIP clitkCommon ITKIO)
ENDIF(CLITK_BUILD_TOOLS)
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+
+// clitk
+#include "clitkMIP_ggo.h"
+#include "clitkMIPGenericFilter.h"
+
+//--------------------------------------------------------------------
+int main(int argc, char * argv[])
+{
+
+ // Init command line
+ GGO(clitkMIP, args_info);
+ CLITK_INIT;
+
+ // Filter
+ typedef clitk::MIPGenericFilter FilterType;
+ FilterType::Pointer filter = FilterType::New();
+
+ filter->SetArgsInfo(args_info);
+
+ try {
+ filter->Update();
+ } catch(std::runtime_error e) {
+ std::cout << e.what() << std::endl;
+ }
+
+ return EXIT_SUCCESS;
+} // This is the end, my friend
+//--------------------------------------------------------------------
--- /dev/null
+#File clitkMIP.ggo
+package "clitkMIP"
+version "1.0"
+purpose ""
+
+option "config" - "Config file" string no
+option "verbose" v "Verbose" flag off
+option "imagetypes" - "Display allowed image types" flag off
+
+option "input" i "Input image filename" string yes
+option "output" o "Output image filename" string yes
+option "dimension" d "Dimension along which to projetct" int yes
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+#ifndef clitkMIPGenericFilter_cxx
+#define clitkMIPGenericFilter_cxx
+
+/* =================================================
+ * @file clitkMIPGenericFilter.cxx
+ * @author Jef Vandemeulebroucke <jef@creatis.insa-lyon.fr>
+ * @date 29 june 2009
+ *
+ * @brief
+ *
+ ===================================================*/
+
+#include "clitkMIPGenericFilter.h"
+
+// itk include
+#include <itkImage.h>
+#include <itkMaximumProjectionImageFilter.h>
+
+#include <clitkCommon.h>
+
+namespace clitk
+{
+
+//--------------------------------------------------------------------
+MIPGenericFilter::MIPGenericFilter():
+ ImageToImageGenericFilter<Self>("MIP")
+{
+ InitializeImageType<3>();
+ InitializeImageType<4>();
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+template<unsigned int Dim>
+void MIPGenericFilter::InitializeImageType()
+{
+ ADD_DEFAULT_IMAGE_TYPES(Dim);
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+void MIPGenericFilter::SetArgsInfo(const args_info_type & a)
+{
+ mArgsInfo=a;
+ SetIOVerbose(mArgsInfo.verbose_flag);
+ if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
+
+ if (mArgsInfo.input_given) {
+ SetInputFilename(mArgsInfo.input_arg);
+ }
+ if (mArgsInfo.output_given) {
+ SetOutputFilename(mArgsInfo.output_arg);
+ }
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//--------------------------------------------------------------------
+template<class InputImageType>
+void
+MIPGenericFilter::UpdateWithInputImageType()
+{
+ typedef typename InputImageType::PixelType PixelType;
+ const int Dim = InputImageType::ImageDimension;
+ typedef itk::Image<PixelType,Dim> ImageType;
+ typedef itk::Image<PixelType,Dim-1> OutputImageType;
+ typedef itk::MaximumProjectionImageFilter<ImageType,OutputImageType> FilterType;
+ typename FilterType::Pointer filter = FilterType::New();
+ filter->SetProjectionDimension(mArgsInfo.dimension_arg);
+ typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
+ filter->SetInput(input);
+ filter->Update();
+ this->template SetNextOutput<OutputImageType>(filter->GetOutput());
+}
+//--------------------------------------------------------------------
+
+
+}//end clitk
+
+#endif //#define clitkMIPGenericFilter_cxx
--- /dev/null
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+
+#ifndef clitkMIPGenericFilter_h
+#define clitkMIPGenericFilter_h
+
+#include "clitkIO.h"
+#include "clitkImageToImageGenericFilter.h"
+#include "clitkMIP_ggo.h"
+
+//--------------------------------------------------------------------
+namespace clitk
+{
+
+ class ITK_EXPORT MIPGenericFilter:
+ public ImageToImageGenericFilter<MIPGenericFilter>
+ {
+
+ public:
+
+ //--------------------------------------------------------------------
+ MIPGenericFilter();
+
+ //--------------------------------------------------------------------
+ typedef MIPGenericFilter Self;
+ typedef itk::SmartPointer<Self> Pointer;
+ typedef itk::SmartPointer<const Self> ConstPointer;
+ typedef args_info_clitkMIP args_info_type;
+
+ //--------------------------------------------------------------------
+ // Method for creation through the object factory
+ // and Run-time type information (and related methods)
+ itkNewMacro(Self);
+ itkTypeMacro(MIPGenericFilter, LightObject);
+
+ //--------------------------------------------------------------------
+ void SetArgsInfo(const args_info_type & a);
+
+ //--------------------------------------------------------------------
+ // Main function called each time the filter is updated
+ template<class InputImageType>
+ void UpdateWithInputImageType();
+
+ protected:
+ template<unsigned int Dim> void InitializeImageType();
+ args_info_type mArgsInfo;
+
+ }; // end class
+ //--------------------------------------------------------------------
+
+} // end namespace clitk
+//--------------------------------------------------------------------
+
+#endif // #define clitkMIPGenericFilter_h
#!/bin/bash
-cp clitkSplitImage.ggo clitk$1.ggo
-cp clitkSplitImage.cxx clitk$1.cxx
-cp clitkSplitImageGenericFilter.h clitk$1GenericFilter.h
-#cp clitkSplitImageGenericFilter.txx clitk$1GenericFilter.txx
-cp clitkSplitImageGenericFilter.cxx clitk$1GenericFilter.cxx
+cp clitkBinarizeImage.ggo clitk$1.ggo
+cp clitkBinarizeImage.cxx clitk$1.cxx
+cp clitkBinarizeImageGenericFilter.h clitk$1GenericFilter.h
+cp clitkBinarizeImageGenericFilter.cxx clitk$1GenericFilter.cxx
-sed -i "s/SplitImage/$1/g" clitk$1*
+sed -i "s/BinarizeImage/$1/g" clitk$1*
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff