Prefer to use link instead of copy for ccIn2p3 data

Before, the job copied data into the temp calculation folder. We prefer to avoid copy of large data, so we use link now

diff --git a/cluster_tools/gate_job_ccin2p3.job b/cluster_tools/gate_job_ccin2p3.job
index c7abaacb11eb6d62d3ef05ca1da5e5735ce725a9..f07f9c2efec8d8b69ab0df6dd28584fcdc93f496 100644 (file)
--- a/cluster_tools/gate_job_ccin2p3.job
+++ b/cluster_tools/gate_job_ccin2p3.job
@@ -22,6 +22,7 @@ function transferJobData {
     mkdir "${OUTPUTDIR}/output.${JOB_ID%%.*}"
     rsync -av --remove-source-files output/ "${OUTPUTDIR}/output.${JOB_ID%%.*}"
     echo "Cleanup"
+    unlink "${LOCALMACRODIR}"/data
     rm -r ${LOCALMACRODIR}
 }
 
@@ -76,7 +77,9 @@ echo "Copying inputs"
 LOCALMACRODIR=$(mktemp -d)
 trap "wait ; transferJobData ; exit 1" 1 2 3 15
 cd ${LOCALMACRODIR}
-cp -r -L "${MACRODIR}"/{data,mac} .
+cp -r -L "${MACRODIR}"/mac .
+ln -s "${MACRODIR}"/data ./data
+#cp -r -L "${MACRODIR}"/{data,mac} .
 mkdir output
 
 # Enforce one thread