--- /dev/null
+/*=========================================================================
+ Program: bbtk
+ Module: $RCSfile: bbvtkConcatImages.cxx,v $
+ Language: C++
+ Date: $Date: 2010/04/08 14:39:45 $
+ Version: $Revision: 1.1 $
+=========================================================================*/
+
+/* ---------------------------------------------------------------------
+
+* Copyright (c) CREATIS-LRMN (Centre de Recherche en Imagerie Medicale)
+* Authors : Eduardo Davila, Laurent Guigues, Jean-Pierre Roux
+*
+* This software is governed by the CeCILL-B license under French law and
+* abiding by the rules of distribution of free software. You can use,
+* modify and/ or redistribute the software under the terms of the CeCILL-B
+* license as circulated by CEA, CNRS and INRIA at the following URL
+* http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+* or in the file LICENSE.txt.
+*
+* As a counterpart to the access to the source code and rights to copy,
+* modify and redistribute granted by the license, users are provided only
+* with a limited warranty and the software's author, the holder of the
+* economic rights, and the successive licensors have only limited
+* liability.
+*
+* The fact that you are presently reading this means that you have had
+* knowledge of the CeCILL-B license and that you accept its terms.
+* ------------------------------------------------------------------------ */
+
+/**
+ * \file
+ * \brief
+ */
+
+#ifdef _USE_VTK_
+#include "bbvtkConcatImages.h"
+#include "bbvtkPackage.h"
+
+namespace bbvtk
+{
+ BBTK_ADD_BLACK_BOX_TO_PACKAGE(vtk,ConcatImages)
+ BBTK_BLACK_BOX_IMPLEMENTATION(ConcatImages,bbtk::AtomicBlackBox);
+
+//---------------------------------------------------------------------
+
+ void ConcatImages::bbUserSetDefaultValues()
+ {
+ //std::cout << "-------- entree ds ConcatImages::bbUserSetDefaultValues()\n" << std::endl;
+
+ // bbSetInputIn(NULL); /// \TODO fix it! IN is a std::vector<vtkImageData> // JPR
+ mConcat = NULL;
+ bbSetOutputOut(NULL);
+ }
+
+//---------------------------------------------------------------------
+
+ void ConcatImages::bbUserInitializeProcessing()
+ {
+ //std::cout << "-------- entree ds ConcatImages::bbUserInitalizeProcessing()\n" << std::endl;
+ //bbUserFinalizeProcessing();
+ mConcat = vtkImageData::New(); // Alloc depends on bbGetInputIn().size()
+ }
+
+//---------------------------------------------------------------------
+
+ void ConcatImages::bbUserFinalizeProcessing()
+ {
+ //std::cout << "-------- entree ds ConcatImages::bbUserFinalizeProcessing()\n" << std::endl;
+ // WTF? we never enter here // JPR bbUserFinalizeProcessing() JPR
+ if (mConcat!=NULL)
+ {
+ // mConcat->Delete();
+ // mConcat=NULL;
+ }
+ bbSetOutputOut(mConcat);
+ }
+
+//---------------------------------------------------------------------
+
+ /// \TODO :clean this dirty stuff :
+ /// - receives a std::vector<vtkImageData*>
+ /// - exports a vtkImageData*
+ /// - supposes *all* the images are consistent (same type, same number of components, same pixel type)
+ /// - if images in the vector are already 3D, exports only the first one. ?!? // JPR
+ ///
+ void ConcatImages::Process()
+ {
+ int dim[3];
+ int nb = (unsigned int)bbGetInputIn().size();
+ if (nb == 0) {} // ??? JPR
+
+ bbGetInputIn()[0]->GetDimensions(dim);
+ if (dim[2] > 1 || nb == 1) // dim[2] > 1 : Hopeless for vtk : the first file contains already a 3D object
+ // nb == 1 : only one image, nothing to do.
+ {
+ mConcat->Delete();
+ mConcat = bbGetInputIn()[0];
+ //mConcat->PrintSelf(std::cout, vtkIndent(2));
+ }
+ else
+ {
+ // We suppose *all* the images within the directory are consistent (same sizeS, same pixel Type?...)
+ vtkImageData * firstImage = bbGetInputIn()[0];
+
+ //std::cout << "--------PrintSelf firstImage " << std::endl;
+ // firstImage->PrintSelf(std::cout, vtkIndent(2));
+
+ int nbComponents = firstImage->GetNumberOfScalarComponents();
+ mConcat->SetNumberOfScalarComponents(nbComponents);
+ mConcat->SetScalarType(firstImage->GetScalarType( ));
+ firstImage->GetDimensions(dim);
+ dim[2]=nb;
+ mConcat->SetDimensions(dim);
+ mConcat->SetExtent(0, dim[0]-1, 0, dim[1]-1, 0, dim[2]-1);
+ mConcat->SetSpacing(firstImage->GetSpacing());
+
+ mConcat->AllocateScalars();
+ mConcat->Update();
+
+ int index_image, index_lignes, index_colonnes, index_components;
+
+ for(index_image=0; index_image<nb; index_image++)
+ {
+ for(index_lignes=0; index_lignes<dim[0];index_lignes++)
+ {
+ for(index_colonnes=0; index_colonnes<dim[1];index_colonnes++)
+ {
+ for(index_components=0; index_components<nbComponents;index_components++)
+ {
+ mConcat->SetScalarComponentFromDouble(index_lignes, index_colonnes, index_image, index_components,(bbGetInputIn()[index_image])->GetScalarComponentAsDouble(index_colonnes,index_lignes,0,index_components));
+ }
+ }
+ }
+ }
+ }
+ // Devrait etre dans bbUserFinalizeProcessing() ? On n'y entre jamais // JPR
+ bbSetOutputOut(mConcat);
+ }
+
+}//namespace bbtk
+
+#endif // _USE_VTK_
--- /dev/null
+/*=========================================================================
+ Program: bbtk
+ Module: $RCSfile: bbvtkConcatImages.h,v $
+ Language: C++
+ Date: $Date: 2010/04/08 14:39:46 $
+ Version: $Revision: 1.1 $
+=========================================================================*/
+
+/* ---------------------------------------------------------------------
+
+* Copyright (c) CREATIS-LRMN (Centre de Recherche en Imagerie Medicale)
+* Authors : Eduardo Davila, Laurent Guigues, Jean-Pierre Roux
+*
+* This software is governed by the CeCILL-B license under French law and
+* abiding by the rules of distribution of free software. You can use,
+* modify and/ or redistribute the software under the terms of the CeCILL-B
+* license as circulated by CEA, CNRS and INRIA at the following URL
+* http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+* or in the file LICENSE.txt.
+*
+* As a counterpart to the access to the source code and rights to copy,
+* modify and redistribute granted by the license, users are provided only
+* with a limited warranty and the software's author, the holder of the
+* economic rights, and the successive licensors have only limited
+* liability.
+*
+* The fact that you are presently reading this means that you have had
+* knowledge of the CeCILL-B license and that you accept its terms.
+* ------------------------------------------------------------------------ */
+
+/**
+ * \brief Short description in one line
+ *
+ * Long description which
+ * can span multiple lines
+ */
+/**
+ * \file
+ * \brief Pattern for the definition of a new type of Node (header)
+ */
+/**
+ * \class bbtk::NodePatern
+ * \brief Pattern for the definition of a new type of Node
+ */
+
+#ifdef _USE_VTK_
+
+#ifndef __bbvtkConcatImages_h_INCLUDED__
+#define __bbvtkConcatImages_h_INCLUDED__
+#include "bbvtk_EXPORT.h"
+
+#include "bbtkAtomicBlackBox.h"
+
+#include "vtkImageData.h"
+
+namespace bbvtk
+{
+ class bbvtk_EXPORT ConcatImages : public bbtk::AtomicBlackBox
+ {
+ public:
+ BBTK_BLACK_BOX_INTERFACE(ConcatImages, bbtk::AtomicBlackBox);
+ BBTK_DECLARE_INPUT(In, std::vector<vtkImageData *>);
+ BBTK_DECLARE_OUTPUT(Out, vtkImageData*);
+ BBTK_PROCESS(Process);
+ void Process();
+ protected:
+ private:
+ vtkImageData *mConcat;
+ };
+
+ //=================================================================
+ // UserBlackBox description
+ BBTK_BEGIN_DESCRIBE_BLACK_BOX(ConcatImages,bbtk::AtomicBlackBox);
+ BBTK_NAME("ConcatImages");
+ BBTK_AUTHOR("jpr@creatis.univ-lyon.fr");
+ BBTK_DESCRIPTION("Concatenates all the 'images' held in a std::vector<vtkImageData*> into a single vtkImageData");
+ BBTK_CATEGORY("application, image");
+ BBTK_INPUT(ConcatImages, In, "Input Vector of Images", std::vector<vtkImageData *>, "");
+ BBTK_OUTPUT(ConcatImages, Out, "Concatenation of all Images", vtkImageData *, "");
+ BBTK_END_DESCRIBE_BLACK_BOX(ConcatImages);
+ //=================================================================
+
+}//namespace bbvtk
+
+#endif //__bbtvtkConcatImages_h__
+#endif //_USE_VTK_
git://git.creatis.insa-lyon.fr / bbtk.git / commitdiff