--- /dev/null
+#ifndef clitkMedianImageGenericFilter_cxx
+#define clitkMedianImageGenericFilter_cxx
+
+/* =================================================
+ * @file clitkMedianImageGenericFilter.cxx
+ * @author Bharath Navalpakkam <Bharath.Navalpakkam@creatis.insa-lyon.fr>
+ * @date 20.03.2010
+ *
+ * @brief
+ *
+ ===================================================*/
+
+#include "clitkMedianImageGenericFilter.h"
+
+#endif //#define clitkMedianImageGenericFilter_cxx
--- /dev/null
+/*=========================================================================
+
+ Program: clitk
+ Module: $RCSfile: clitkMedianImageGenericFilter.h,v $
+ Language: C++
+ Date: $Date: 2010/04/09 09:50:04 $
+ Version: $Revision: 1.1 $
+ Author : Bharath Navalpakkam <Bharath.Navalpakkam@creatis.insa-lyon.fr>
+ Copyright (C) 2010
+ Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ CREATIS http://www.creatis.insa-lyon.fr
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, version 3 of the License.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ =========================================================================*/
+
+#ifndef CLITKMEDIANIMAGEGENERICFILTER_H
+#define CLITKMEDIANIMAGEGENERICFILTER_H
+
+// clitk include
+#include "clitkIO.h"
+#include "clitkCommon.h"
+#include "clitkImageToImageGenericFilter.h"
+
+//--------------------------------------------------------------------
+namespace clitk
+{
+
+ template<class args_info_type>
+ class ITK_EXPORT MedianImageGenericFilter:
+ public ImageToImageGenericFilter<MedianImageGenericFilter<args_info_type> >
+ {
+
+ public:
+
+ //--------------------------------------------------------------------
+ MedianImageGenericFilter();
+
+ //--------------------------------------------------------------------
+ typedef MedianImageGenericFilter Self;
+ typedef itk::SmartPointer<Self> Pointer;
+ typedef itk::SmartPointer<const Self> ConstPointer;
+
+ //--------------------------------------------------------------------
+ // Method for creation through the object factory
+ // and Run-time type information (and related methods)
+ itkNewMacro(Self);
+ itkTypeMacro(MedianImageGenericFilter, LightObject);
+
+ //--------------------------------------------------------------------
+ void SetArgsInfo(const args_info_type & a);
+
+ //--------------------------------------------------------------------
+ // Main function called each time the filter is updated
+ template<class InputImageType>
+ void UpdateWithInputImageType();
+
+
+
+
+ protected:
+ template<unsigned int Dim> void InitializeImageType();
+
+ args_info_type mArgsInfo;
+
+ }; // end class
+ //--------------------------------------------------------------------
+
+} // end namespace clitk
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "clitkMedianImageGenericFilter.txx"
+#endif
+
+#endif // #define clitkMedianImageGenericFilter_h
--- /dev/null
+#ifndef clitkMedianImageGenericFilter_txx
+#define clitkMedianImageGenericFilter_txx
+
+/* =================================================
+ * @file clitkMedianImageGenericFilter.txx
+ * @author Bharath Navalapakkam <Bharath.Navalpakkam@creatis.insa-lyon.fr>
+ * @date 20 March 2010
+ *
+ * @brief
+ *
+ ===================================================*/
+
+// itk include
+#include "itkMedianImageFilter.h"
+#include "itkImage.h"
+
+namespace clitk
+{
+
+ //--------------------------------------------------------------------
+ template<class args_info_type>
+ MedianImageGenericFilter<args_info_type>::MedianImageGenericFilter():
+ ImageToImageGenericFilter<Self>("MedianImage") {
+ InitializeImageType<2>();
+ InitializeImageType<3>();
+ InitializeImageType<4>();
+ }
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class args_info_type>
+ template<unsigned int Dim>
+ void MedianImageGenericFilter<args_info_type>::InitializeImageType() {
+ ADD_IMAGE_TYPE(Dim, char);
+ ADD_IMAGE_TYPE(Dim, uchar);
+ ADD_IMAGE_TYPE(Dim, short);
+ ADD_IMAGE_TYPE(Dim, int);
+ ADD_IMAGE_TYPE(Dim, float);
+ ADD_IMAGE_TYPE(Dim, double);
+ ADD_IMAGE_TYPE(Dim, unsigned short);
+
+
+ }
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class args_info_type>
+ void MedianImageGenericFilter<args_info_type>::SetArgsInfo(const args_info_type & a) {
+ mArgsInfo=a;
+ SetIOVerbose(mArgsInfo.verbose_flag);
+
+
+ if (mArgsInfo.input_given) {
+ SetInputFilename(mArgsInfo.input_arg);
+ }
+ if (mArgsInfo.output_given) {
+ SetOutputFilename(mArgsInfo.output_arg);
+ }
+
+
+ }
+ //--------------------------------------------------------------------
+
+ //--------------------------------------------------------------------
+ // Update with the number of dimensions and the pixeltype
+ //--------------------------------------------------------------------
+ template<class args_info_type>
+ template<class InputImageType>
+ void
+ MedianImageGenericFilter<args_info_type>::UpdateWithInputImageType()
+ {
+ // Reading input
+ typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
+// Typedef
+ typedef typename InputImageType::PixelType PixelType;
+
+
+
+
+ // typedef itk::Image<PixelType,InputImageType::ImageDimension> OutputImageType;
+
+ // Main filter
+
+ typedef itk::Image<uchar, InputImageType::ImageDimension> OutputImageType;
+ class InputImageType::SizeType indexRadius;
+
+ // Filter
+ typedef itk::MedianImageFilter<InputImageType, OutputImageType> MedianImageFilterType;
+
+
+ typename MedianImageFilterType::Pointer thresholdFilter=MedianImageFilterType::New();
+ thresholdFilter->SetInput(input);
+
+
+indexRadius[0]=mArgsInfo.radius_arg[0];
+indexRadius[1]=mArgsInfo.radius_arg[1];
+indexRadius[2]=mArgsInfo.radius_arg[2];
+
+
+
+
+// indexRadius[0] = 1;
+ // indexRadius[1] = 1;
+
+thresholdFilter->SetRadius( indexRadius );
+
+
+ typename OutputImageType::Pointer outputImage = thresholdFilter->GetOutput();
+ thresholdFilter->Update();
+
+ // Write/Save results
+ this->template SetNextOutput<OutputImageType>(outputImage);
+
+
+ }
+
+ //--------------------------------------------------------------------
+
+}//end clitk
+
+
+
+#endif //#define clitkMedianImageGenericFilter_txx
+
--- /dev/null
+/*------------------------------------------------------------------------
+
+ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+ l'Image). All rights reserved. See Doc/License.txt or
+ http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the above copyright notices for more information.
+
+ ------------------------------------------------------------------------*/
+
+/* =================================================
+ * @file clitkMedianImageGenericFilter.txx
+ * @author Bharath Navalpakkam <Bharath.Navalpakkam@creatis.insa-lyon.fr>
+ * @date 18 March 2010
+ *
+ * @brief Apply Median Filter to an Image
+ *
+ ===================================================*/
+
+// clitk
+#include "clitkMedianImageFilter_ggo.h"
+#include "clitkMedianImageGenericFilter.h"
+
+//--------------------------------------------------------------------
+int main(int argc, char * argv[]) {
+
+ // Init command line
+ GGO(clitkMedianImageFilter, args_info);
+ CLITK_INIT;
+
+ // Filter
+ clitk::MedianImageGenericFilter<args_info_clitkMedianImageFilter>::Pointer filter =
+ clitk::MedianImageGenericFilter<args_info_clitkMedianImageFilter>::New();
+
+
+ filter->SetOutputFilename(args_info.output_arg);
+
+ filter->SetArgsInfo(args_info);
+
+ filter->Update();
+
+ return EXIT_SUCCESS;
+}// end main
+
+//--------------------------------------------------------------------
--- /dev/null
+#File clitkMedianImageFilter.ggo
+package "clitkMedianImageFilter"
+version "1.0"
+purpose ""
+
+option "config" - "Config file" string no
+option "verbose" v "Verbose" flag off
+option "input" i "Input image filename" string yes
+option "output" o "Output image filename" string yes
+option "radius" r "Radius in each Direction" int multiple no default="1"
+
+
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>vvToolMedianFilter</class>
+ <widget class="QWidget" name="vvToolMedianFilter">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>735</width>
+ <height>290</height>
+ </rect>
+ </property>
+ <property name="windowTitle">
+ <string>Mean Filter</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_9">
+ <item>
+ <widget class="QLabel" name="label">
+ <property name="text">
+ <string>X Radius</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QSlider" name="horizontalSlider">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit"/>
+ </item>
+ <item>
+ <layout class="QGridLayout" name="gridLayout_12"/>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_2">
+ <property name="text">
+ <string>Y Radius</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QSlider" name="horizontalSlider_2">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_2"/>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_7"/>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_3">
+ <property name="text">
+ <string>Z Radius</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QSlider" name="horizontalSlider_3">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_3"/>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <resources/>
+ <connections/>
+</ui>
--- /dev/null
+ /*=========================================================================
+
+ Program: vv
+ Module: $RCSfile: vvToolMedianFilter.cxx,v $
+ Language: C++
+ Date: $Date: 2010/04/09 09:53:27 $
+ Version: $Revision: 1.1 $
+ Author : Bharath Navalpakkam (Bharath.Navalpakkam@creatis.insa-lyon.fr)
+
+ Copyright (C) 2010
+ Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ CREATIS http://www.creatis.insa-lyon.fr
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, version 3 of the License.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ =========================================================================*/
+
+ #include "vvToolMedianFilter.h"
+ #include "vvSlicerManager.h"
+ #include "vvSlicer.h"
+ #include "vvToolInputSelectorWidget.h"
+ #include <clitkMedianImageGenericFilter.h>
+
+
+ //------------------------------------------------------------------------------
+ // Create the tool and automagically
+ ADD_TOOL(vvToolMedianFilter);
+ //------------------------------------------------------------------------------
+
+ //------------------------------------------------------------------------------
+ vvToolMedianFilter::vvToolMedianFilter(vvMainWindowBase * parent, Qt::WindowFlags f)
+ :vvToolWidgetBase(parent,f),
+ vvToolBase<vvToolMedianFilter>(parent),
+ Ui::vvToolMedianFilter()
+ {
+
+ // Setup the UI
+
+ Ui_vvToolMedianFilter::setupUi(mToolWidget);
+
+ mFilter = new clitk::MedianImageGenericFilter<args_info_clitkMedianImageFilter>;
+
+
+
+ // Main filter
+
+ // Set how many inputs are needed for this tool
+ AddInputSelector("Select one image", mFilter);
+ }
+
+ //------------------------------------------------------------------------------
+ vvToolMedianFilter::~vvToolMedianFilter() {
+ }
+ //------------------------------------------------------------------------------
+
+
+
+ void vvToolMedianFilter::Initialize() {
+ SetToolName("MedianFilter");
+ SetToolMenuName("MedianFilter");
+ SetToolIconFilename(":/new/prefix1/icons/ducky.png");
+ SetToolTip("Make 'MedianFilter' on an image.");
+ }
+ //------------------------------------------------------------------------------
+
+ void vvToolMedianFilter::apply() {
+
+ GetArgsInfoFromGUI();
+
+ if (!mCurrentSlicerManager) close();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ // Main filter
+ clitk::MedianImageGenericFilter<args_info_clitkMedianImageFilter>::Pointer filter =
+ clitk::MedianImageGenericFilter<args_info_clitkMedianImageFilter>::New();
+
+
+ filter->SetInputVVImage(mCurrentImage);
+ filter->SetArgsInfo(mArgsInfo);
+
+ filter->EnableReadOnDisk(false);
+ filter->Update();
+
+
+ // Output
+ vvImage::Pointer output = filter->GetOutputVVImage();
+ std::ostringstream osstream;
+ osstream << "MedianFiltered_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ AddImage(output,osstream.str());
+ QApplication::restoreOverrideCursor();
+ close();
+
+
+ }
+
+ //------------------------------------------------------------------------------
+
+ void vvToolMedianFilter::GetArgsInfoFromGUI() {
+
+ /* //KEEP THIS FOR READING GGO FROM FILE
+ int argc=1;
+ std::string a = "toto";
+ char * const* argv = new char*;
+ //a.c_str();
+ struct cmdline_parser_params p;
+ p.check_required = 0;
+ int good = cmdline_parser_ext(argc, argv, &args_info, &p);
+ DD(good);
+ */
+ mArgsInfo.radius_given=0;
+ mArgsInfo.verbose_flag = false;
+ // mArgsInfo.radius_arg = new int[3];
+
+ // Required (even if not used)
+ mArgsInfo.input_given = 0;
+ mArgsInfo.output_given = 0;
+
+ mArgsInfo.input_arg=new char;
+ mArgsInfo.output_arg = new char;
+
+
+ mArgsInfo.config_given=0;
+ mArgsInfo.verbose_given=0;
+
+
+ // mArgsInfo.radius_arg[0]=1;
+ // mArgsInfo.radius_arg[1]=1;
+ // mArgsInfo.radius_arg[2]=1;
+
+ }
+ //------------------------------------------------------------------------------
+void vvToolMedianFilter::InputIsSelected(vvSlicerManager *m){
+ mCurrentSlicerManager =m;
+ // Specific for this gui
+
+ mArgsInfo.radius_arg = new int[3];
+ connect(horizontalSlider, SIGNAL(valueChanged(int)), this, SLOT(UpdatevalueH1()));
+ connect(horizontalSlider_2, SIGNAL(valueChanged(int)), this, SLOT(UpdatevalueH2()));
+ connect(horizontalSlider_3, SIGNAL(valueChanged(int)), this, SLOT(UpdatevalueH3()));
+
+
+
+}
+
+ //-----------------------------------------------------------------------------
+
+void vvToolMedianFilter::UpdatevalueH1()
+{
+ mArgsInfo.radius_arg[0]=horizontalSlider->value();
+ QString string1 = QString::number(mArgsInfo.radius_arg[0]);
+ lineEdit->setText(string1);
+}
+void vvToolMedianFilter::UpdatevalueH2()
+{
+ mArgsInfo.radius_arg[1]=horizontalSlider_2->value();
+ QString string2 = QString::number(mArgsInfo.radius_arg[1]);
+ lineEdit_2->setText(string2);
+}
+void vvToolMedianFilter::UpdatevalueH3()
+{
+ mArgsInfo.radius_arg[2]=horizontalSlider_3->value();
+ QString string3 = QString::number(mArgsInfo.radius_arg[2]);
+ lineEdit_3->setText(string3);
+
+}
--- /dev/null
+ /*=========================================================================
+
+ Program: vv
+ Module: $RCSfile: vvToolMedianFilter.h,v $
+ Language: C++
+ Date: $Date: 2010/04/09 09:53:50 $
+ Version: $Revision: 1.1 $
+ Author : Bharath Navalpakkam (Bharath.Navalpakkam@creatis.insa-lyon.fr)
+
+ Copyright (C) 2010
+ Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ CREATIS http://www.creatis.insa-lyon.fr
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, version 3 of the License.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ =========================================================================*/
+
+ #ifndef VVTOOLMedianFilter_H
+ #define VVTOOLMedianFilter_H
+
+ #include <QtDesigner/QDesignerExportWidget>
+ #include "vvToolBase.h"
+ #include "QDialog"
+ #include "vvToolWidgetBase.h"
+ #include "ui_vvToolMedianFilter.h"
+ #include "clitkMedianImageFilter_ggo.h"
+ #include <clitkMedianImageGenericFilter.h>
+
+
+ //------------------------------------------------------------------------------
+ class vvToolMedianFilter:
+ public vvToolWidgetBase,
+ public vvToolBase<vvToolMedianFilter>,
+ private Ui::vvToolMedianFilter
+ {
+ Q_OBJECT
+ public:
+ vvToolMedianFilter(vvMainWindowBase* parent=0, Qt::WindowFlags f=0);
+ ~vvToolMedianFilter();
+
+ static void Initialize();
+ virtual void GetArgsInfoFromGUI();
+ virtual void InputIsSelected(vvSlicerManager * m);
+ virtual void apply();
+
+
+ public slots:
+ void UpdatevalueH1();
+ void UpdatevalueH2();
+ void UpdatevalueH3();
+
+
+
+
+
+
+ protected:
+
+ Ui::vvToolMedianFilter ui;
+ args_info_clitkMedianImageFilter mArgsInfo;
+
+
+ }; // end class vvToolMedianFilter
+ //------------------------------------------------------------------------------
+
+ #endif
+
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff