From: Simon Rit <simon.rit@creatis.insa-lyon.fr>
Date: Mon, 30 Sep 2013 14:14:29 +0000 (+0200)
Subject: Add mha in uncertainty files and error message if unhandled file format
X-Git-Tag: v1.4.0~159
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=0d9b7d9c2f8b8086ff8efaa488690d11e5fa993a;p=clitk.git

Add mha in uncertainty files and error message if unhandled file format
---

diff --git a/cluster_tools/gate_power_merge.sh b/cluster_tools/gate_power_merge.sh
index f82a119..e10510e 100755
--- a/cluster_tools/gate_power_merge.sh
+++ b/cluster_tools/gate_power_merge.sh
@@ -444,7 +444,7 @@ function merge_dispatcher_uncertainty {
 
     if [[ "${firstpartialoutputfile}" == *Uncertainty* ]]
     then
-        if test "${firstpartialoutputextension}" == "mhd"
+    	if test "${firstpartialoutputextension}" == "mhd" || test "${firstpartialoutputextension}" == "mha"
         then
             echo "${indent}Uncertainty file found: ${firstpartialoutputfile}"
             ## search for sum
@@ -466,7 +466,7 @@ function merge_dispatcher_uncertainty {
             echo "${indent}${squared_merged_file} found"
             ## search for NumberOfEvent
             totalEvents=0;
-            for outputfile in $(find "${rundir}" -regextype 'posix-extended' -type f -regex "${rundir}/output.*\.(hdr|mhd|root|txt)" | awk -F '/' '{ print $NF; }' | sort | uniq)
+            for outputfile in $(find "${rundir}" -regextype 'posix-extended' -type f -regex "${rundir}/output.*\.(hdr|mhd|mha|root|txt)" | awk -F '/' '{ print $NF; }' | sort | uniq)
             do
                 #echo $outputfile
                 if grep -q 'NumberOfEvent' "${outputdir}/${outputfile}"
@@ -485,6 +485,8 @@ function merge_dispatcher_uncertainty {
                 warning "${totalEvents} not positive. A at least one stat file (SimulationStatisticActor) must be provided. Error, no uncertainty computed"
                 return;
             fi
+	else
+            error "merge_dispatcher_uncertainty does not handle ${firstpartialoutputfile} files"
         fi
     fi
 
@@ -517,7 +519,7 @@ done
 
 echo ""
 echo "Merging done. Special case for statistical uncertainty"
-for outputfile in $(find "${outputdir}" -regextype 'posix-extended' -type f -regex "${outputdir}/.*\.(hdr|mhd|root|txt)" | awk -F '/' '{ print $NF; }' | sort | uniq)
+for outputfile in $(find "${outputdir}" -regextype 'posix-extended' -type f -regex "${outputdir}/.*\.(hdr|mhd|mha|root|txt)" | awk -F '/' '{ print $NF; }' | sort | uniq)
 do
     merge_dispatcher_uncertainty "${outputfile}"
 done