From: malaterre <malaterre>
Date: Mon, 10 Oct 2005 20:02:09 +0000 (+0000)
Subject: ENH: Adding an example for reading and playing with Curve Data (500x,3000)
X-Git-Tag: Version1.2.bp~39
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=1304084bfc9690503a0d701c5a115db734e22d5b;p=gdcm.git

ENH: Adding an example for reading and playing with Curve Data (500x,3000)
---

diff --git a/Example/exCurveData.cxx b/Example/exCurveData.cxx
new file mode 100644
index 00000000..3a520e6f
--- /dev/null
+++ b/Example/exCurveData.cxx
@@ -0,0 +1,178 @@
+/*=========================================================================
+                                                                                
+  Program:   gdcm
+  Module:    $RCSfile: exCurveData.cxx,v $
+  Language:  C++
+  Date:      $Date: 2005/10/10 20:02:09 $
+  Version:   $Revision: 1.1 $
+                                                                                
+  Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+  l'Image). All rights reserved. See Doc/License.txt or
+  http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+                                                                                
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+     PURPOSE.  See the above copyright notices for more information.
+                                                                                
+=========================================================================*/
+#include "gdcmFile.h"
+#include "gdcmFileHelper.h"
+#include "gdcmCommon.h"
+#include "gdcmDebug.h"
+#include "gdcmDocEntry.h"
+#include "gdcmBinEntry.h"
+
+// Helper function
+template<class DataValueRepresentation>
+inline size_t PrintCurveData(DataValueRepresentation* data, unsigned short numPts)
+{
+   for(unsigned int i=0; i<numPts;++i)
+     {
+     std::cout << "Pt(" << i <<  ") = " << data[i] << std::endl;
+     }
+
+   // ok this is ugly but I need the size outside of the function
+   return sizeof(DataValueRepresentation);
+}
+ 
+/*
+ // Example (sorry, we've got no more than this one ...)
+ * V 5004|0000 [UL]                  [Group Length] [1998] x(7ce)
+ * V 5004|0005 [US]              [Curve Dimensions] [1] x(1)
+ * V 5004|0010 [US]              [Number of Points] [969] x(3c9)
+ * V 5004|0020 [CS]                  [Type of Data] [PHYSIO]
+ * V 5004|0022 [LO]             [Curve Description] []
+ * V 5004|0103 [US]     [Data Value Representation] [0] x(0)
+ * B 5004|3000 [OW]                    [Curve Data] [gdcm::Binary data loaded;length = 1938]
+ */
+ 
+int main(int argc, char *argv[])
+{  
+   gdcm::File *f;
+ 
+   std::cout << "------------------------------------------------" << std::endl;
+   std::cout << "Gets the 'Curve Data' from a full gdcm-readable DICOM " << std::endl;
+   std::cout << "(Note :  we just have ONE image : "
+             << "GE_DLX-8-MONO2-Multiframe.dcm"
+             << std::endl;
+   std::cout << "------------------------------------------------" << std::endl;
+
+   std::string fileName;
+   if( argc > 1 )
+      fileName = argv[1];
+   else
+      fileName = "GE_DLX-8-MONO2-Multiframe.dcm";
+
+   std::cout << fileName << std::endl;
+// ============================================================
+//   Read the input image.
+// ============================================================
+
+   f = new gdcm::File( );
+
+   f->SetLoadMode(gdcm::LD_NOSEQ | gdcm::LD_NOSHADOW);
+   f->SetFileName( fileName );
+   bool res = f->Load();  
+
+   if( gdcm::Debug::GetDebugFlag() )
+   {
+      std::cout << "---------------------------------------------" << std::endl;
+      f->Print();
+      std::cout << "---------------------------------------------" << std::endl;
+   }
+   if (!res) {
+       std::cout << "Sorry, " << fileName <<"  not a gdcm-readable "
+           << "DICOM / ACR File"
+           <<std::endl;
+      delete f;
+      return 1;
+   }
+   std::cout << " ... is readable " << std::endl;
+
+// ============================================================
+//   Check whether image contains Overlays ACR-NEMA style.
+// ============================================================
+
+   //* B 5004|3000 [OW]                    [Curve Data] [gdcm::Binary data loaded;length = 1938]
+   std::string curve_data_str = f->GetEntryValue(0x5004, 0x3000);
+   if (curve_data_str == gdcm::GDCM_UNFOUND)
+   {
+      std::cout << " Image doesn't contain any Curve Data" << std::endl;
+      delete f;
+      return 1;
+   }
+   std::cout << " File is read! " << std::endl;
+
+
+// ============================================================
+//   Load the Curve Data in memory.
+// ============================================================
+  std::istringstream convert;
+ //* V 5004|0005 [US]              [Curve Dimensions] [1] x(1)
+   std::string curve_dim_str = f->GetEntryValue(0x5004,0x0005);
+   unsigned short curve_dim;
+   convert.str(curve_dim_str);
+   convert >> curve_dim;
+   std::cout << "Curve Dimensions: " << curve_dim << std::endl;
+ //* V 5004|0010 [US]              [Number of Points] [969] x(3c9)
+   std::string num_points_str = f->GetEntryValue(0x5004,0x0010);
+   unsigned short num_points;
+   convert.clear(); //important
+   convert.str(num_points_str);
+   convert >> num_points;
+   std::cout << "Number of Points: " << num_points << std::endl;
+ //* V 5004|0020 [CS]                  [Type of Data] [PHYSIO]
+   std::string data_type = f->GetEntryValue(0x5004,0x0020);
+   std::cout << "Type of Data: " << data_type << std::endl;
+ //* V 5004|0022 [LO]             [Curve Description] []
+   std::string curve_desc = f->GetEntryValue(0x5004,0x0022);
+   std::cout << "Curve Description: " << curve_desc << std::endl;
+ //* V 5004|0103 [US]     [Data Value Representation] [0] x(0)
+   std::string data_rep_str = f->GetEntryValue(0x5004,0x0103);
+   unsigned short data_rep;
+   convert.clear(); //important
+   convert.str(data_rep_str);
+   convert >> data_rep;
+
+
+   gdcm::DocEntry *pCurveDataDoc = f->GetDocEntry(0x5004, 0x3000);
+   gdcm::BinEntry *pCurveData = dynamic_cast<gdcm::BinEntry*>(pCurveDataDoc);
+   uint8_t *curve_data = pCurveData->GetBinArea();
+   
+   // From Part3, C.10.2.1.2 Data value representation (p668)
+   size_t sz;
+   switch( data_rep)
+     {
+   case 0:
+     sz = PrintCurveData((unsigned short*)(curve_data), num_points);
+     break;
+   case 1:
+     sz = PrintCurveData((signed short*)(curve_data), num_points);
+     break;
+   case 2:
+     sz = PrintCurveData((float*)(curve_data), num_points);
+     break;
+   case 3:
+     sz = PrintCurveData((double*)(curve_data), num_points);
+     break;
+   case 4:
+     sz = PrintCurveData((signed long*)(curve_data), num_points);
+     break;
+   default:
+     std::cerr << "Error don't know the type: " << data_rep_str << std::endl;
+     delete f;
+     return 1;
+     }
+   // Just to make sure that values read are consistant and we won't read out of bound data:
+   assert( sz*num_points == pCurveData->GetLength());
+
+   // Write out the data as a file:
+   //std::ofstream o("/tmp/curve_data.raw");
+   //o.write((char*)curve_data, num_points*sz);
+   //o.close();
+
+   delete f;
+   return 0;
+}
+
+