From: jpr <jpr>
Date: Wed, 9 Mar 2005 19:15:04 +0000 (+0000)
Subject: Add an executable (not yet fully checked) to anonymize a DICOMDIR
X-Git-Tag: Version1.2.bp~829
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=1d9e55eaf7f1a4fdabb89d17fed3708dd908135f;p=gdcm.git

Add an executable (not yet fully checked) to anonymize a DICOMDIR
without loading it as a gdcmDicomDir (just as a ggdcm::Document),
yet gdcm::DicomDir contructor only retains the SQItems *we* use
(more may be present inside the Sequence, and they would desappeared using
standard Anonymize method)
---

diff --git a/Example/AnonymizeDicomDir.cxx b/Example/AnonymizeDicomDir.cxx
new file mode 100644
index 00000000..1c86608c
--- /dev/null
+++ b/Example/AnonymizeDicomDir.cxx
@@ -0,0 +1,173 @@
+/*=========================================================================
+                                                                                
+  Program:   gdcm
+  Module:    $RCSfile: AnonymizeDicomDir.cxx,v $
+  Language:  C++
+  Date:      $Date: 2005/03/09 19:15:04 $
+  Version:   $Revision: 1.1 $
+                                                                                
+  Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+  l'Image). All rights reserved. See Doc/License.txt or
+  http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+                                                                                
+     This software is distributed WITHOUT ANY WARRANTY; without even
+     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+     PURPOSE.  See the above copyright notices for more information.
+                                                                                
+=========================================================================*/
+#include "gdcmGlobal.h"
+#include "gdcmCommon.h"
+#include "gdcmDebug.h"
+#include "gdcmUtil.h"
+
+#include "gdcmSQItem.h"
+#include "gdcmSeqEntry.h"
+#include "gdcmValEntry.h"
+
+#include "gdcmDocument.h"
+#include "gdcmFile.h"
+
+#include <iostream>
+
+void AnoNoLoad(gdcm::SQItem *s, std::fstream *fp, 
+               uint16_t group, uint16_t elem, 
+               std::string val);
+
+void AnoNoLoad(gdcm::SQItem *s, std::fstream *fp, 
+               uint16_t group, uint16_t elem, 
+               std::string val)
+{
+   gdcm::DocEntry *d;
+   uint32_t offset;
+   uint32_t lgth;
+   uint32_t valLgth = 0;
+   std::string *spaces;
+   std::string v;
+
+   d = s->GetDocEntry( group, elem);
+
+   if ( d == NULL)
+      return;
+
+   if ( ! dynamic_cast<gdcm::ValEntry *>(d) )
+      return;
+
+   offset = d->GetOffset();
+   lgth =   d->GetLength();
+   if (valLgth < lgth)
+   {
+      spaces = new std::string( lgth-valLgth, ' ');
+      v = val + *spaces;
+      delete spaces;
+   }
+   fp->seekp( offset, std::ios::beg );
+   fp->write( v.c_str(), lgth );
+}
+
+int main(int argc, char *argv[])
+{  
+   gdcm::File *f1;
+ 
+   gdcm::Debug::DebugOn();
+   std::cout << "------------------------------------------------" << std::endl;
+   std::cout << "Anonymize a gdcm-readable DICOMDIR   "            << std::endl;
+   std::cout << "even some Objects are not yet taken into account" << std::endl;
+   std::cout << "Warning : the DICOMDIR is overwritten"            << std::endl;
+   std::cout << "        : to preserve file integrity "
+             << " think unto using a copy .. "                     << std::endl;
+ 
+   if( argc < 3 )
+    {
+    std::cerr << "Usage " << argv[0] << " DICOMDIR to anonymize  " 
+              << std::endl;
+    return 1;
+    }
+
+   std::string fileName       = argv[1];
+
+// ============================================================
+//   Read the input DICOMDIR
+// ============================================================
+
+   std::cout << argv[1] << std::endl;
+
+   f1 = new gdcm::File( fileName );
+   if (!f1->IsReadable()) {
+       std::cerr << "Sorry, " << fileName <<"  not a gdcm-readable "
+                 << "file" <<std::endl;
+   }
+   std::cout << " ... is readable " << std::endl;
+
+
+   // Directory record sequence
+   gdcm::DocEntry *e = f1->GetDocEntry(0x0004, 0x1220);
+   if ( !e )
+   {
+      std::cout << "No Directory Record Sequence (0004,1220) found" <<std::endl;;
+      return 0;         
+   }
+   
+   gdcm::SeqEntry *s = dynamic_cast<gdcm::SeqEntry *>(e);
+   if ( !s )
+   {
+      std::cout << "Element (0004,1220) is not a Sequence ?!?" <<std::endl;
+      return 0;
+   }
+
+   // Open the file LTTG (aka ALAP)
+   std::fstream *fp = new std::fstream(fileName.c_str(), 
+                              std::ios::in | std::ios::out | std::ios::binary);
+   gdcm::DocEntry *d;
+   std::string v;
+
+   int patientNumber = 0;
+   std::ostringstream oss;
+
+   gdcm::SQItem *tmpSI=s->GetFirstSQItem();  // For all the SQItems
+   while(tmpSI)
+   {
+      d = tmpSI->GetDocEntry(0x0004, 0x1430); // Directory Record Type
+      if ( gdcm::ValEntry* valEntry = dynamic_cast<gdcm::ValEntry *>(d) )
+      {
+         v = valEntry->GetValue();
+      }
+      else
+      {
+         std::cout << "(0004,1430) not a ValEntry ?!?" << std::endl;
+         continue;
+      }
+
+      if( v != "PATIENT " )
+      {
+         continue;          // Work only on PATIENT
+      }
+
+      oss << patientNumber;      
+
+      //   Overwrite the sensitive Entries
+
+      // Patient's Name
+      AnoNoLoad(tmpSI, fp, 0x0010, 0x0010, oss.str());
+      // Patient's ID
+      AnoNoLoad(tmpSI, fp, 0x0010, 0x0020, oss.str());
+      // Patient's Birth Date
+      AnoNoLoad(tmpSI, fp, 0x0010, 0x0030, oss.str());
+     // Telephone
+      AnoNoLoad(tmpSI, fp, 0x0010, 0x2154, oss.str()); 
+
+    // Aware use will add more Entries he wants to rubb out here
+
+      oss << "";
+      patientNumber++;
+      tmpSI=s->GetNextSQItem();
+   }
+
+   // Close the file ASAP
+
+   fp->close();
+   delete fp;
+    
+   delete f1;
+   return 0;
+}
+