From: tbaudier <thomas.baudier@creatis.insa-lyon.fr>
Date: Tue, 16 Oct 2018 08:41:26 +0000 (+0200)
Subject: Add like option in clitkExtrude tool
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=22aac696ea46e2e4f989d8893bcb978f63715aef;p=clitk.git

Add like option in clitkExtrude tool

Before we had to set size, spacing and origin for the new dimension
But we could want to have the same size, spacing and origin than another image.
So I add the like option

I remove the required for the size option because if like is set , size is not mandatory
I controled that like and origin, size or spacing are not set at the same time
---

diff --git a/tools/clitkExtrude.ggo b/tools/clitkExtrude.ggo
index 680d188..f7a2263 100644
--- a/tools/clitkExtrude.ggo
+++ b/tools/clitkExtrude.ggo
@@ -8,6 +8,7 @@ option "verbose"  v "Verbose"                       flag    off
 
 option "input"    i "Input image filename"          string  required
 option "output"   o "Output image filename"         string  required
-option "size"     N "Size in pixel of extrusion"    int     yes
+option "size"     N "Size in pixel of extrusion"    int     no        default="1"
 option "spacing"  s "Spacing of the new dimension"  double  no        default="1.0"
 option "origin"   - "Origin of the new dimension"   double  no        default="0.0"
+option "like"     l "Size, spacing and origin like this image"  string  no
diff --git a/tools/clitkExtrudeGenericFilter.txx b/tools/clitkExtrudeGenericFilter.txx
index 96c7dc1..30eafea 100644
--- a/tools/clitkExtrudeGenericFilter.txx
+++ b/tools/clitkExtrudeGenericFilter.txx
@@ -19,6 +19,7 @@
 #define clitkExtrudeGenericFilter_txx
 
 // itk include
+#include <itkImageFileReader.h>
 #include <clitkCommon.h>
 
 namespace clitk
@@ -89,14 +90,46 @@ ExtrudeGenericFilter<args_info_type>::UpdateWithInputImageType()
 
   start.Fill(0);
 
+  //Check if like is given and not size, origin and spacing
   int extrusionSize(1);
-  if (mArgsInfo.size_given) {
-    if (mArgsInfo.size_arg > 0)
-      extrusionSize = mArgsInfo.size_arg;
-    else {
-      std::cerr << "The size has to be > 0" << std::endl;
+  double extrusionOrigin(0.0), extrusionSpacing(1.0);
+
+  if (mArgsInfo.like_given) {
+    if (mArgsInfo.size_given || mArgsInfo.spacing_given || mArgsInfo.origin_given) {
+      std::cerr << "You cannot set --like and --size, --origin or --spacing at the same time" << std::endl;
       return;
     }
+
+    // Read the input like image
+    typedef itk::ImageFileReader<OutputImageType> LikeReaderType;
+    typename LikeReaderType::Pointer reader = LikeReaderType::New();
+    reader->SetFileName(mArgsInfo.like_arg);
+    reader->Update();
+    typename OutputImageType::Pointer likeImage = reader->GetOutput();
+
+    extrusionSize = likeImage->GetLargestPossibleRegion().GetSize()[Dim];
+    extrusionSpacing = likeImage->GetSpacing()[Dim];
+    extrusionOrigin = likeImage->GetOrigin()[Dim];
+  } else {
+    if (mArgsInfo.size_given) {
+      if (mArgsInfo.size_arg > 0)
+        extrusionSize = mArgsInfo.size_arg;
+      else {
+        std::cerr << "The size has to be > 0" << std::endl;
+        return;
+      }
+    }
+    if (mArgsInfo.origin_given) {
+      extrusionOrigin = mArgsInfo.origin_arg;
+    }
+    if (mArgsInfo.spacing_given) {
+      if (mArgsInfo.spacing_arg > 0)
+        extrusionSpacing = mArgsInfo.spacing_arg;
+      else {
+        std::cerr << "The spacing has to be > 0" << std::endl;
+        return;
+      }
+    }
   }
 
   for (unsigned int i=0; i<Dim; ++i)