From: David Sarrut Date: Mon, 26 Sep 2011 07:08:00 +0000 (+0200) Subject: Simplification of options X-Git-Tag: v1.3.0~218 X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=43cb42177bad5a4661b124e8e07e360efd08f197;p=clitk.git Simplification of options --- diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo index 3138514..9fd52f8 100644 --- a/segmentation/clitkExtractLymphStations.ggo +++ b/segmentation/clitkExtractLymphStations.ggo @@ -3,50 +3,44 @@ package "clitkExtractLymphStations" version "1.0" purpose "Extract LymphStations with help of TODO" -option "config" - "Config file" string no -option "imagetypes" - "Display allowed image types" flag off -option "verbose" v "Verbose" flag off -option "verboseStep" - "Verbose each step" flag off -option "writeStep" w "Write image at each step" flag off -option "verboseOption" - "Display options values" flag off -option "verboseWarningOff" - "Do not display warning" flag off -option "verboseMemory" - "Display memory usage" flag off +option "config" - "Config file" string no +option "imagetypes" - "Display allowed image types" flag off +option "verbose" v "Verbose" flag off +option "verboseStep" - "Verbose each step" flag off +option "writeStep" w "Write image at each step" flag off +option "verboseOption" - "Display options values" flag off +option "verboseWarningOff" - "Do not display warning" flag off +option "verboseMemory" - "Display memory usage" flag off section "I/O" -option "afdb" a "Input Anatomical Feature DB" string no -option "input" i "Input filename" string no -option "output" o "Output lungs mask filename" string no -option "station" - "Force to compute station even if already exist in the DB" string no multiple -option "nosupport" - "Do not recompute the station supports if already available" flag off +option "afdb" a "Input Anatomical Feature DB" string no +option "input" i "Input filename" string no +option "output" o "Output lungs mask filename" string no +section "Options for all stations" +option "station" - "Force to compute station even if already exist in the DB" string no multiple +option "nosupport" - "Do not recompute the station supports if already available" flag off +option "relpos" - "List of filenames for relativeposition operations" string no multiple section "Options for Station 3A" -option "S3A_ft_SVC" - "Fuzzy Threshold for NotPost to SVC" double default="0.5" no -option "S3A_ft_Bones" - "Fuzzy Threshold for Post to Bones" double default="0.5" no -option "S3A_t_Bones" - "Binary HU Threshold for bones" double default="250" no -option "S3A_ft_Aorta" - "Fuzzy Threshold for NotPost to Aorta" double default="0.5" no -option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no + +section "Options for Station 2RL" + +section "Options for Station 1RL" section "Options for Station 8" -option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple +option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple -option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no +option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no section "Options for Station 7" -option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no -option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no +option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no +option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no -option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no -option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no -option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no -option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off +option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no +option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no +option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no +option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off -section "Options for Station 2RL" -option "S2RL_ft_CommonCarotidArtery" - "Threshold for NotAntTo to CommonCarotidArtery" double default="0.7" no -option "S2RL_ft_BrachioCephalicTrunk" - "Threshold for NotAntTo to BrachioCephalicTrunk" double default="0.7" no -option "S2RL_ft_BrachioCephalicVein" - "Threshold for NotAntTo to BrachioCephalicVein" double default="0.3" no -option "S2RL_ft_Aorta" - "Threshold for RightTo to Aorta" double default="0.7" no -option "S2RL_ft_SubclavianArteryRight" - "Threshold for NotLeft to SubclavianArteryRight" double default="0.5" no -option "S2RL_ft_SubclavianArteryLeft" - "Threshold for NotRight to SubclavianArteryLeft" double default="0.8" no