From: bharath Date: Mon, 2 Aug 2010 20:45:28 +0000 (+0000) Subject: reads from a config file and performs the registration X-Git-Tag: v1.2.0~446 X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=4c29241d0b3f5adec779f5dcd4f9671df1417e84;p=clitk.git reads from a config file and performs the registration --- diff --git a/vv/vvToolRigidReg.cxx b/vv/vvToolRigidReg.cxx index 3879adf..bd28850 100644 --- a/vv/vvToolRigidReg.cxx +++ b/vv/vvToolRigidReg.cxx @@ -55,9 +55,7 @@ vvToolRigidReg::vvToolRigidReg(vvMainWindowBase * parent, Qt::WindowFlags f): // qsize.setWidth(850); // mToolWidget->setFixedSize(qsize); - // Set how many inputs are needed for this tool - // mFilter = new clitk::AffineTransformGenericFilter; mFilter = new clitk::AffineRegistrationGenericFilter; // Set how many inputs are needed for this tool @@ -91,83 +89,49 @@ void vvToolRigidReg::reject() //------------------------------------------------------------------------------ void vvToolRigidReg::GetArgsInfoFromGUI() -{ +{ + QFont font=QFont("Times New Roman",10); + tab2textedit->setTextColor(QColor(255,0,0)); + tab2textedit->setCurrentFont(font); + tab2textedit->update(); QString str; - str.append("Configs Loaded for AutoRegister...Apply Filter..."); + QString file = QFileDialog::getOpenFileName( + this, + "Choose the Transformation Parameters file", + mMainWindow->GetInputPathName(), + "Text (*.conf *.txt *.rtf *.doc)"); + if (file.isEmpty()) + return; + QFile Qfile1(file); + // ifstream readfile; + std::string configfile= file.toStdString(); + cmdline_parser_clitkAffineRegistration_configfile(const_cast(configfile.c_str()),&mArgsInfo,1,1,1); + mArgsInfo.gradient_flag=1; + + //Read from File and display it on the TextBox 2 + ifstream readfile; + std::vector Qstr; + readfile.open(configfile.c_str()); + if (readfile.is_open()) + { + while (!readfile.eof()) + { + readfile >> configfile; + Qstr.push_back(QString(configfile.c_str())); + } + readfile.close(); + } + else { + cout << "Unable to open file"; + } + for(unsigned int i=0;itoPlainText(); + str.append(Qstr.at(i)); + tab2textedit->setText(str); + str.append("\n"); tab2textedit->setText(str); - /* cmdline_parser_clitkAffineRegistration_configfile("/home/bharath/bin/AffineReg.txt",&mArgsInfo,1,1,0); - mArgsInfo.reference_arg=new char; - mArgsInfo.target_arg=new char; - mArgsInfo.output_arg=new char; - mArgsInfo.referenceMask_arg=new char; - mArgsInfo.targetMask_arg=new char; - mArgsInfo.initMatrix_arg=new char; - mArgsInfo.matrix_arg=new char;*/ - mArgsInfo.referenceMask_given=0; - mArgsInfo.reference_given=0; - mArgsInfo.reference_arg=new char; - mArgsInfo.target_given=0; - mArgsInfo.target_arg=new char; - mArgsInfo.output_given=0; - mArgsInfo.output_arg=new char; - mArgsInfo.checker_after_given=0; - mArgsInfo.checker_before_given=0; - mArgsInfo.after_given=0; - mArgsInfo.before_given=0; - // std::string strouput= "/home/bharath/bin/Lung3Doutput.mhd"; - //mArgsInfo.output_arg=const_cast(strouput.c_str()); - mArgsInfo.threads_given=1; - mArgsInfo.threads_arg=3; - mArgsInfo.normalize_flag=0; - DD("GetArgsInfoFromGUI_2"); - mArgsInfo.blur_arg=0.0; - mArgsInfo.referenceMask_arg=new char; - mArgsInfo.targetMask_arg=new char; - mArgsInfo.targetMask_given=0; - mArgsInfo.levels_given=1; - mArgsInfo.levels_arg=2; - mArgsInfo.moment_flag=1; - mArgsInfo.intThreshold_given=0; - mArgsInfo.intThreshold_arg=0.0; - mArgsInfo.transX_arg=0.0; - mArgsInfo.transY_arg=0.0; - mArgsInfo.transZ_arg=0.0; - mArgsInfo.transform_arg=2; - mArgsInfo.gradient_flag=1; - mArgsInfo.interp_given=1; - mArgsInfo.interp_arg=1; - mArgsInfo.interpOrder_given=1; - mArgsInfo.interpOrder_arg=3; - mArgsInfo.interpSF_given=1; - mArgsInfo.interpSF_arg=20;//default - mArgsInfo.metric_given=1; - mArgsInfo.metric_arg=0; - mArgsInfo.samples_arg=1;//default - mArgsInfo.stdDev_arg=0.4; - mArgsInfo.step_arg=2.0; - mArgsInfo.relax_arg=0.7; - mArgsInfo.valueTol_arg=0.01; - mArgsInfo.stepTol_arg=0.1; - mArgsInfo.gradTol_arg=1e-5; - mArgsInfo.lineAcc_arg=0.9; - mArgsInfo.convFactor_arg=1e+12; - mArgsInfo.maxIt_arg=500; - mArgsInfo.maxLineIt_arg=50; - mArgsInfo.maxEval_arg=500; - mArgsInfo.maxCorr_arg=5; - mArgsInfo.selectBound_arg=0; - mArgsInfo.inc_arg=1.2; - mArgsInfo.dec_arg=4; - mArgsInfo.optimizer_arg=1; - mArgsInfo.initMatrix_given=0; - mArgsInfo.initMatrix_arg=new char; - mArgsInfo.tWeight_given=1; - mArgsInfo.tWeight_arg=1.0; - mArgsInfo.rWeight_given=1.0; - mArgsInfo.rWeight_arg=50.0; - // std::string str="/home/bharath/bin/matrix.txt"; - // mArgsInfo.initMatrix_arg=const_cast(str.c_str()); - mArgsInfo.matrix_given=0; + } } //------------------------------------------------------------------------------ @@ -189,7 +153,7 @@ void vvToolRigidReg::InputIsSelected(std::vector & l) QMessageBox::information(this, "Warning","Your Reference and Target Images are the same"); } mTwoInputs = true; - SetOverlay(); + SetOverlay(mInput2->GetImage()); mImageSize=mInput1->GetImage()->GetSize(); SetRotationCenter(); SetSliderRanges(); @@ -234,10 +198,10 @@ void vvToolRigidReg::apply() //------------------------------------------------------------------------------ //------------------------------------------------------------------------------ -void vvToolRigidReg::SetOverlay() +void vvToolRigidReg::SetOverlay(vvImage::Pointer Image) { for (int i =0; iNumberOfSlicers(); i++) { - mCurrentSlicerManager->GetSlicer(i)->SetOverlay(mInput2->GetImage()); + mCurrentSlicerManager->GetSlicer(i)->SetOverlay(Image); mCurrentSlicerManager->GetSlicer(i)->SetActorVisibility("overlay",0,true); mCurrentSlicerManager->SetColorMap(); mCurrentSlicerManager->Render(); @@ -443,12 +407,13 @@ void vvToolRigidReg::AutoRegister() vvImage::Pointer output = filter->GetOutputVVImage(); DD("filter getoutput done..."); std::ostringstream osstream; - osstream << "Registered" << "_ " - << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd"; - AddImage(output,osstream.str()); + //osstream << "Registered" << "_ " + // << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd"; + //AddImage(output,osstream.str()); + SetOverlay(output); QApplication::restoreOverrideCursor(); - close(); + // close(); } //------------------------------------------------------------------------------ @@ -526,7 +491,7 @@ void vvToolRigidReg::SaveFile() //------------------------------------------------------------------------------ void vvToolRigidReg::ReadFile() { - std::string x; + std::string x; QString center; double * orientations=new double[3]; double * translations=new double[3]; @@ -583,7 +548,6 @@ void vvToolRigidReg::ReadFile() InitializeSliders(rint(translations[0]),rint(translations[1]) ,rint(translations[2]),rint(orientations[0]),rint(orientations[1]),rint(orientations[2]),true); SetTransform(matrix); - } //------------------------------------------------------------------------------