From: Eduardo DAVILA Date: Fri, 4 Jun 2021 05:04:13 +0000 (+0200) Subject: #3463 KMeans box X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=5295954f425da0c7c12d0bd458289ab82945423b;p=creaVtk.git #3463 KMeans box --- diff --git a/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbg b/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbg new file mode 100644 index 0000000..6dea424 --- /dev/null +++ b/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbg @@ -0,0 +1,85 @@ +# ---------------------------------- +# - BBTKGEditor v 1.4 BBG BlackBox Diagram file +# - /home/davila/Creatis/C11/creatools_source/creaVtk/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbg +# ---------------------------------- + +APP_START +CATEGORY: +DESCRIPTION:Description ?? +AUTHOR:Author ?? +COMPLEXBOX:FALSE +COMPLEXINPUTS:0 +BOXES:7 +BOX +creaVtk:KMeansStatistics:Box00 +ISEXEC:FALSE +-38.722672:-3.319086:-900.000000 +3.477328:-13.319086:-900.000000 +PORT +NumberOfClusters:"5" +FIN_BOX +BOX +vtk:LoadHola:Box01 +ISEXEC:FALSE +-59.901602:70.965223:-900.000000 +-24.351602:60.965223:-900.000000 +FIN_BOX +BOX +creaMaracasVisu:ViewerNV:Box02 +ISEXEC:FALSE +-11.853879:-34.929430:-900.000000 +51.866121:-44.929430:-900.000000 +FIN_BOX +BOX +vtk:ExtractVtkImageFilter:Box08 +ISEXEC:FALSE +-62.588481:45.993051:-900.000000 +-15.713481:35.993051:-900.000000 +PORT +Index:"0 0 40" +PORT +Size:"100 100 2" +FIN_BOX +BOX +creaMaracasVisu:ViewerNV:Box09 +ISEXEC:FALSE +-95.219704:-34.527844:-900.000000 +-31.499704:-44.527844:-900.000000 +FIN_BOX +BOX +creaMaracasVisu:ImageChangeInformation:Box11 +ISEXEC:FALSE +-66.065619:24.814120:-900.000000 +-14.540619:14.814120:-900.000000 +FIN_BOX +BOX +wx:LayoutSplit:Box07 +ISEXEC:TRUE +-49.154085:-72.545740:-900.000000 +-10.074085:-82.545740:-900.000000 +PORT +Orientation:"H" +FIN_BOX +CONNECTIONS:7 +CONNECTION +Box01:Out:Box08:In +NumberOfControlPoints:0 +CONNECTION +Box00:Out:Box02:In +NumberOfControlPoints:0 +CONNECTION +Box08:Out:Box11:In +NumberOfControlPoints:0 +CONNECTION +Box11:Out:Box00:In +NumberOfControlPoints:0 +CONNECTION +Box11:Out:Box09:In +NumberOfControlPoints:0 +CONNECTION +Box09:Widget:Box07:Widget1 +NumberOfControlPoints:0 +CONNECTION +Box02:Widget:Box07:Widget2 +NumberOfControlPoints:0 +APP_END diff --git a/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbs b/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbs new file mode 100644 index 0000000..16cf8f0 --- /dev/null +++ b/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbs @@ -0,0 +1,56 @@ +# ---------------------------------- +# - BBTKGEditor v 1.4 BBS BlackBox Script +# - /home/davila/Creatis/C11/creatools_source/creaVtk/bbtk_creaVtk_PKG/bbs/appli/exampleKMeans.bbs +# ---------------------------------- + +# BBTK GEditor Script +# ---------------------- + +include std +include itkvtk +include creaVtk +include vtk +include creaMaracasVisu +include wx + +author "Author ??" +description "Description ??" +category "" + +new creaVtk:KMeansStatistics Box00 + set Box00.NumberOfClusters "5" + +new vtk:LoadHola Box01 + +new creaMaracasVisu:ViewerNV Box02 + +new vtk:ExtractVtkImageFilter Box08 + set Box08.Index "0 0 40" + set Box08.Size "100 100 2" + +new creaMaracasVisu:ViewerNV Box09 + +new creaMaracasVisu:ImageChangeInformation Box11 + +new wx:LayoutSplit Box07 + set Box07.Orientation "H" + + +connect Box01.Out Box08.In + +connect Box00.Out Box02.In + +connect Box08.Out Box11.In + +connect Box11.Out Box00.In + +connect Box11.Out Box09.In + +connect Box09.Widget Box07.Widget1 + +connect Box02.Widget Box07.Widget2 + + + +# Complex input ports +exec Box07 diff --git a/bbtk_creaVtk_PKG/src/bbcreaVtkKMeansStatistics.cxx b/bbtk_creaVtk_PKG/src/bbcreaVtkKMeansStatistics.cxx new file mode 100644 index 0000000..45370ac --- /dev/null +++ b/bbtk_creaVtk_PKG/src/bbcreaVtkKMeansStatistics.cxx @@ -0,0 +1,214 @@ +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== + + + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include + + + +#include "bbcreaVtkKMeansStatistics.h" +#include "bbcreaVtkPackage.h" +namespace bbcreaVtk +{ + +BBTK_ADD_BLACK_BOX_TO_PACKAGE(creaVtk,KMeansStatistics) +BBTK_BLACK_BOX_IMPLEMENTATION(KMeansStatistics,bbtk::AtomicBlackBox); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void KMeansStatistics::Process() +{ + +// THE MAIN PROCESSING METHOD BODY +// Here we simply set the input 'In' value to the output 'Out' +// And print out the output value +// INPUT/OUTPUT ACCESSORS ARE OF THE FORM : +// void bbSet{Input|Output}NAME(const TYPE&) +// const TYPE& bbGet{Input|Output}NAME() const +// Where : +// * NAME is the name of the input/output +// (the one provided in the attribute 'name' of the tag 'input') +// * TYPE is the C++ type of the input/output +// (the one provided in the attribute 'type' of the tag 'input') + +// bbSetOutputOut( bbGetInputIn() ); +// std::cout << "Output value = " < inputData; + int ext[6]; + int dimX,dimY,dimZ; + bbGetInputIn()->GetExtent(ext); + dimX = ext[1]-ext[0]+1; + dimY = ext[3]-ext[2]+1; + dimZ = ext[5]-ext[4]+1; + + vtkImageData *resultImage = vtkImageData::New(); + resultImage->Initialize(); + resultImage->SetSpacing( bbGetInputIn()->GetSpacing() ); + resultImage->SetDimensions( dimX, dimY, dimZ ); + resultImage->AllocateScalars( VTK_SHORT ,1 ); + + long int size= dimX*dimY*dimZ; + vtkDoubleArray *doubleArrayX = vtkDoubleArray::New(); + vtkDoubleArray *doubleArrayY = vtkDoubleArray::New(); + vtkDoubleArray *doubleArrayZ = vtkDoubleArray::New(); + vtkDoubleArray *doubleArrayValue1 = vtkDoubleArray::New(); + vtkDoubleArray *doubleArrayValue2 = vtkDoubleArray::New(); + vtkDoubleArray *doubleArrayValue3 = vtkDoubleArray::New(); + doubleArrayX->SetNumberOfComponents(1); + doubleArrayY->SetNumberOfComponents(1); + doubleArrayZ->SetNumberOfComponents(1); + doubleArrayValue1->SetNumberOfComponents(1); + doubleArrayValue2->SetNumberOfComponents(1); + doubleArrayValue3->SetNumberOfComponents(1); + doubleArrayX->SetName("X"); + doubleArrayY->SetName("Y"); + doubleArrayZ->SetName("Z"); + doubleArrayValue1->SetName("Value1"); + doubleArrayValue2->SetName("Value2"); + doubleArrayValue3->SetName("Value3"); + doubleArrayX->SetNumberOfTuples( size ); + doubleArrayY->SetNumberOfTuples( size ); + doubleArrayZ->SetNumberOfTuples( size ); + if (bbGetInputIn()->GetNumberOfScalarComponents()>=1) { doubleArrayValue1->SetNumberOfTuples( size ); } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=2) { doubleArrayValue2->SetNumberOfTuples( size ); } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=3) { doubleArrayValue3->SetNumberOfTuples( size ); } + + double value; + int x,y,z; + for ( z=0 ; zSetValue(x + y*dimX + z*dimX*dimY, x ); + doubleArrayY->SetValue(x + y*dimX + z*dimX*dimY, y ); + doubleArrayZ->SetValue(x + y*dimX + z*dimX*dimY, z ); + if (bbGetInputIn()->GetNumberOfScalarComponents()>=1) + { + value = bbGetInputIn()->GetScalarComponentAsDouble(x,y,z,0); + doubleArrayValue1->SetValue( x + y*dimX + z*dimX*dimY , value ); + } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=2) + { + value = bbGetInputIn()->GetScalarComponentAsDouble(x,y,z,1); + doubleArrayValue2->SetValue( x + y*dimX + z*dimX*dimY , value ); + } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=3) + { + value = bbGetInputIn()->GetScalarComponentAsDouble(x,y,z,2); + doubleArrayValue3->SetValue( x + y*dimX + z*dimX*dimY , value ); + } + } // for x + } // for y + }// for z + + inputData->AddColumn(doubleArrayX); + inputData->AddColumn(doubleArrayY); + inputData->AddColumn(doubleArrayZ); + if (bbGetInputIn()->GetNumberOfScalarComponents()>=1) { inputData->AddColumn(doubleArrayValue1); } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=2) { inputData->AddColumn(doubleArrayValue2); } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=3) { inputData->AddColumn(doubleArrayValue3); } + + + printf("EED KMeansStatistics::Process 1\n"); + + vtkNew kMeansStatistics; + kMeansStatistics->SetInputData(vtkStatisticsAlgorithm::INPUT_DATA, inputData); + kMeansStatistics->SetColumnStatus(inputData->GetColumnName(0), 1); + kMeansStatistics->SetColumnStatus(inputData->GetColumnName(1), 1); + kMeansStatistics->SetColumnStatus(inputData->GetColumnName(2), 1); + if (bbGetInputIn()->GetNumberOfScalarComponents()>=1) { kMeansStatistics->SetColumnStatus(inputData->GetColumnName(3), 1); } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=2) { kMeansStatistics->SetColumnStatus(inputData->GetColumnName(4), 1); } + if (bbGetInputIn()->GetNumberOfScalarComponents()>=3) { kMeansStatistics->SetColumnStatus(inputData->GetColumnName(5), 1); } + + kMeansStatistics->RequestSelectedColumns(); + kMeansStatistics->SetAssessOption(true); + kMeansStatistics->SetDefaultNumberOfClusters( bbGetInputNumberOfClusters() ); + kMeansStatistics->Update(); + +// Display the results +// kMeansStatistics->GetOutput()->Dump(); + for ( z=0 ; zGetOutput()->GetValue( r, kMeansStatistics->GetOutput()->GetNumberOfColumns() - 1); + resultImage->SetScalarComponentFromDouble(x,y,z,0,(double) (v.ToInt()) ); + } // for x + } // for y + }// for z + bbSetOutputOut( resultImage ); + printf("EED KMeansStatistics::Process Start\n"); +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void KMeansStatistics::bbUserSetDefaultValues() +{ + +// SET HERE THE DEFAULT INPUT/OUTPUT VALUES OF YOUR BOX +// Here we initialize the input 'In' to 0 + bbSetInputIn(NULL); + bbSetInputNumberOfClusters(3); + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void KMeansStatistics::bbUserInitializeProcessing() +{ + +// THE INITIALIZATION METHOD BODY : +// Here does nothing +// but this is where you should allocate the internal/output pointers +// if any + + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void KMeansStatistics::bbUserFinalizeProcessing() +{ + +// THE FINALIZATION METHOD BODY : +// Here does nothing +// but this is where you should desallocate the internal/output pointers +// if any + +} +} +// EO namespace bbcreaVtk + + diff --git a/bbtk_creaVtk_PKG/src/bbcreaVtkKMeansStatistics.h b/bbtk_creaVtk_PKG/src/bbcreaVtkKMeansStatistics.h new file mode 100644 index 0000000..de19521 --- /dev/null +++ b/bbtk_creaVtk_PKG/src/bbcreaVtkKMeansStatistics.h @@ -0,0 +1,52 @@ +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +#ifndef __bbcreaVtkKMeansStatistics_h_INCLUDED__ +#define __bbcreaVtkKMeansStatistics_h_INCLUDED__ + +#include "bbcreaVtk_EXPORT.h" +#include "bbtkAtomicBlackBox.h" +#include "iostream" + +#include + +namespace bbcreaVtk +{ + +class bbcreaVtk_EXPORT KMeansStatistics + : + public bbtk::AtomicBlackBox +{ + BBTK_BLACK_BOX_INTERFACE(KMeansStatistics,bbtk::AtomicBlackBox); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== + BBTK_DECLARE_INPUT(In,vtkImageData*); + BBTK_DECLARE_INPUT(NumberOfClusters,int); + + BBTK_DECLARE_OUTPUT(Out,vtkImageData*); + BBTK_PROCESS(Process); + void Process(); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +}; + +BBTK_BEGIN_DESCRIBE_BLACK_BOX(KMeansStatistics,bbtk::AtomicBlackBox); + BBTK_NAME("KMeansStatistics"); + BBTK_AUTHOR("InfoDev"); + BBTK_DESCRIPTION("No Description."); + BBTK_CATEGORY("empty"); + BBTK_INPUT(KMeansStatistics,In,"Input image",vtkImageData*,""); + BBTK_INPUT(KMeansStatistics,NumberOfClusters,"(default 3) Number of Clusters", int ,""); + + BBTK_OUTPUT(KMeansStatistics,Out,"Output image with labels",vtkImageData*,""); +BBTK_END_DESCRIBE_BLACK_BOX(KMeansStatistics); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +} +// EO namespace bbcreaVtk + +#endif // __bbcreaVtkKMeansStatistics_h_INCLUDED__ +