From: delmon <delmon>
Date: Thu, 10 Mar 2011 16:17:56 +0000 (+0000)
Subject: Romulo:
X-Git-Tag: v1.2.0~182
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=577c4b178e7cf1b0a4fd92a8e5e437d71e1e6a6a;p=clitk.git

Romulo:
- Corrected bug in --noAutoCrop function, both in ggo file and source code
---

diff --git a/segmentation/clitkExtractBones.ggo b/segmentation/clitkExtractBones.ggo
index d7a737c..d69f92f 100644
--- a/segmentation/clitkExtractBones.ggo
+++ b/segmentation/clitkExtractBones.ggo
@@ -45,4 +45,4 @@ section "Fill holes"
 option "doNotFillHoles"		-  "Do not fill holes if set"                 flag on
 option "dir"    	        d  "Directions (axes) to perform filling (defaults to 2,1,0)"	int multiple no
 
-option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	on
+option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	off
diff --git a/segmentation/clitkExtractPatient.ggo b/segmentation/clitkExtractPatient.ggo
index 9aed69e..5c2861d 100644
--- a/segmentation/clitkExtractPatient.ggo
+++ b/segmentation/clitkExtractPatient.ggo
@@ -50,6 +50,6 @@ option  "remove"  	-		"Labels to remove"			int 	no	multiple
 section "Clean-up"
 
 option "openClose"	- 	"Perform morphological opening and closing with unit radius"	flag 	off
-option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	on
+option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	off
 
 
diff --git a/segmentation/clitkExtractPatientGenericFilter.txx b/segmentation/clitkExtractPatientGenericFilter.txx
index 9435288..8cde3f5 100644
--- a/segmentation/clitkExtractPatientGenericFilter.txx
+++ b/segmentation/clitkExtractPatientGenericFilter.txx
@@ -68,7 +68,9 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetVerboseWarningFlag(!mArgsInfo.verboseWarningOff_flag);
   f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
 
-  f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  if (mArgsInfo.afdb_given)
+    f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  
   f->SetOutputPatientFilename(mArgsInfo.output_arg);
 
   f->SetUpperThreshold(mArgsInfo.upper_arg);