From: David Sarrut <david.sarrut@creatis.insa-lyon.fr>
Date: Thu, 20 Jun 2013 10:30:03 +0000 (+0200)
Subject: Allow to write only new structures (do not copy older ones)
X-Git-Tag: v1.4.0~201
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=593ad2d23114d3ff50817a224e766a8cce624c78;p=clitk.git

Allow to write only new structures (do not copy older ones)
---

diff --git a/common/clitkImage2DicomRTStructFilter.h b/common/clitkImage2DicomRTStructFilter.h
index d570934..b6a74b2 100644
--- a/common/clitkImage2DicomRTStructFilter.h
+++ b/common/clitkImage2DicomRTStructFilter.h
@@ -47,6 +47,7 @@ namespace clitk {
     itkSetMacro(OutputFilename, std::string);
     void SetROIType(std::string type);
     itkSetMacro(ThresholdValue, PixelType);
+    itkSetMacro(SkipInitialStructuresFlag, bool);
     
     // Run filter
     void Update();    
@@ -58,6 +59,7 @@ namespace clitk {
     std::string m_ROIType;
     PixelType m_ThresholdValue;
     std::vector<std::string> m_InputFilenames;
+    bool m_SkipInitialStructuresFlag;
   };
   //--------------------------------------------------------------------
 
diff --git a/common/clitkImage2DicomRTStructFilter.txx b/common/clitkImage2DicomRTStructFilter.txx
index 248451d..77c5e07 100644
--- a/common/clitkImage2DicomRTStructFilter.txx
+++ b/common/clitkImage2DicomRTStructFilter.txx
@@ -62,6 +62,7 @@ clitk::Image2DicomRTStructFilter<PixelType>::Image2DicomRTStructFilter()
   m_DicomFolder = "";
   m_OutputFilename = "default-output.dcm";
   m_ThresholdValue = 0.5;
+  m_SkipInitialStructuresFlag = false;
 }
 //--------------------------------------------------------------------
 
@@ -119,6 +120,11 @@ void clitk::Image2DicomRTStructFilter<PixelType>::Update()
   // Init writer
   vtkGDCMPolyDataWriter * writer = vtkGDCMPolyDataWriter::New();
   int numMasks = reader->GetNumberOfOutputPorts() + m;
+
+  if (m_SkipInitialStructuresFlag) {
+    numMasks = m;
+  }
+
   writer->SetNumberOfInputPorts(numMasks);    
   writer->SetFileName(m_OutputFilename.c_str());
   writer->SetMedicalImageProperties(reader->GetMedicalImageProperties());
diff --git a/tools/clitkImage2DicomRTStruct.cxx b/tools/clitkImage2DicomRTStruct.cxx
index a82b0ec..807b073 100644
--- a/tools/clitkImage2DicomRTStruct.cxx
+++ b/tools/clitkImage2DicomRTStruct.cxx
@@ -42,6 +42,7 @@ int main(int argc, char * argv[]) {
   filter.SetOutputFilename(args_info.output_arg);
   filter.SetROIType(args_info.roitype_arg);
   filter.SetThresholdValue(args_info.threshold_arg);
+  filter.SetSkipInitialStructuresFlag(args_info.skip_flag);
   filter.Update();
 
   // This is the end my friend 
diff --git a/tools/clitkImage2DicomRTStruct.ggo b/tools/clitkImage2DicomRTStruct.ggo
index 70f85b2..7416d32 100644
--- a/tools/clitkImage2DicomRTStruct.ggo
+++ b/tools/clitkImage2DicomRTStruct.ggo
@@ -11,5 +11,6 @@ option "dicom"	         d "Input folder where the initial dicom ct is"
 option "output"		 o "Output DicomRT filename"	      string	yes
 
 option "threshold"       t "Threshold for binary image"                         float   no default = "0.5"
+option "skip"	         s "Do not write in output the structures that was in input"   flag off
 option "roitype"	 - "Name of the type of roi added into the rt-struct"   string	no default = "ORGAN"