From: tbaudier <thomas.baudier@creatis.insa-lyon.fr>
Date: Wed, 19 Dec 2018 14:50:37 +0000 (+0100)
Subject: Debug opening dicom with rotation matrix
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=5f801bf0b07486889123e941d6913d4369dfc86f;p=clitk.git

Debug opening dicom with rotation matrix

With the introduction of the choose in the Image reader to open the dicom with or without the patient coordinate system, I need to pass the value of the patient flag to take into account the transformation matrix
---

diff --git a/tools/clitkDicom2Image.cxx b/tools/clitkDicom2Image.cxx
index aa63b04..5c9889b 100644
--- a/tools/clitkDicom2Image.cxx
+++ b/tools/clitkDicom2Image.cxx
@@ -201,6 +201,7 @@ int main(int argc, char * argv[])
     // Read write serie
     vvImageReader::Pointer reader = vvImageReader::New();
     reader->SetInputFilenames(sorted_files);
+    reader->SetPatientCoordinateSystem(args_info.patientSystem_flag);
     reader->Update(vvImageReader::DICOM);
     if (reader->GetLastError().size() != 0) {
       std::cerr << reader->GetLastError() << std::endl;