From: David Sarrut <david.sarrut@gmail.com>
Date: Tue, 6 Nov 2012 09:23:38 +0000 (+0100)
Subject: Add option to detect too small segmented structures
X-Git-Tag: v1.4.0~278
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=6c8ecb1971240e7cc615362d1d1ec9b0bf2edda4;p=clitk.git

Add option to detect too small segmented structures
---

diff --git a/segmentation/clitkExtractLung.ggo b/segmentation/clitkExtractLung.ggo
index 0cae0f8..44b99a2 100644
--- a/segmentation/clitkExtractLung.ggo
+++ b/segmentation/clitkExtractLung.ggo
@@ -67,5 +67,5 @@ option "dir"    	        d  "Directions (axes) to perform filling (defaults to 2
 
 section "Step 7 : lung separation (labelling)"
 option "doNotSeparateLungs"   -  "Do not separate lungs if set"                 flag off
-
+option "removeSmallLabel"     -  "Remove small label (stomach?) before separation"  flag on
 option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	off
diff --git a/segmentation/clitkExtractLungGenericFilter.txx b/segmentation/clitkExtractLungGenericFilter.txx
index 1fbb5c0..b9a94d8 100644
--- a/segmentation/clitkExtractLungGenericFilter.txx
+++ b/segmentation/clitkExtractLungGenericFilter.txx
@@ -113,6 +113,8 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   else
     f->SetFillHolesFlag(true);
 
+  f->SetRemoveSmallLabelBeforeSeparationFlag(mArgsInfo.removeSmallLabel_flag);
+
   if (mArgsInfo.doNotSeparateLungs_given)
     f->SetSeparateLungsFlag(false);
   else