From: Simon Rit <simon.rit@creatis.insa-lyon.fr>
Date: Tue, 8 Jul 2014 14:34:58 +0000 (+0200)
Subject: Fix for parameters passed to Gate
X-Git-Tag: v1.4.0~115
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=7168f79779028087f7aa137fccbe032d03e74206;p=clitk.git

Fix for parameters passed to Gate
---

diff --git a/cluster_tools/gate_run_submit_cluster.sh b/cluster_tools/gate_run_submit_cluster.sh
index 24fdab9..8858c68 100755
--- a/cluster_tools/gate_run_submit_cluster.sh
+++ b/cluster_tools/gate_run_submit_cluster.sh
@@ -19,6 +19,7 @@ function usage {
     echo "${SCRIPTNAME} mac/main.mac njobs releasesuffix paramtogate"
     echo "default njobs = ${DEFAULTNUMBEROFJOBS}"
     echo "default releasesuffix = ${DEFAULTRELEASESUFFIX} (NONE means use Gate in PATH)"
+    echo "default paramtogate = \"\" (use \"\" around params and \\ in front of commas)"
 }
 # -------------------------------------------------
 
@@ -107,8 +108,8 @@ while test $NJOBS -gt 0; do
              -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
              "${JOBFILE}" || error "submission error"
     else
-        qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
-	    -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
+	qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
+	    -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
 	    "${JOBFILE}" || error "submission error"
     fi