From: Simon Rit <simon.rit@creatis.insa-lyon.fr>
Date: Tue, 2 Jul 2013 21:21:56 +0000 (+0200)
Subject: Corrected cluster job to move current output before deleting the rest of
X-Git-Tag: v1.4.0~169^2~8
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=9fd1b6b57748331f6fb851697564f415e9016f24;p=clitk.git

Corrected cluster job to move current output before deleting the rest of
the macro files
---

diff --git a/cluster_tools/gate_job_cluster.job b/cluster_tools/gate_job_cluster.job
index 6b893b1..1242dfd 100644
--- a/cluster_tools/gate_job_cluster.job
+++ b/cluster_tools/gate_job_cluster.job
@@ -65,7 +65,7 @@ test -d "${MACRODIR}" && test -d "${MACRODIR}/mac" || error "invalid macro"
 
 echo "Copying inputs"
 LOCALMACRODIR=$(mktemp -d)
-trap "rm -rf ${LOCALMACRODIR} ; exit 1" 1 2 3 15
+trap "mv output ${OUTPUTDIR}/output.${PBS_JOBID%%.*} ; rm -r ${LOCALMACRODIR} ; exit 1" 1 2 3 15
 cd ${LOCALMACRODIR}
 cp -r -L "${MACRODIR}"/{data,mac} .
 mkdir output