From: Vivien Delmon Date: Mon, 7 May 2012 11:18:48 +0000 (+0200) Subject: remove duplicated file X-Git-Tag: v1.3.0~41^2~3 X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=a2340e7ac0c98ac78d15852c09d1eef7a0af71ce;p=clitk.git remove duplicated file --- diff --git a/registration/clitkExtractImageFilter.h b/registration/clitkExtractImageFilter.h deleted file mode 100644 index 1e797bc..0000000 --- a/registration/clitkExtractImageFilter.h +++ /dev/null @@ -1,113 +0,0 @@ -/*========================================================================= - Program: vv http://www.creatis.insa-lyon.fr/rio/vv - - Authors belong to: - - University of LYON http://www.universite-lyon.fr/ - - Léon Bérard cancer center http://www.centreleonberard.fr - - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the copyright notices for more information. - - It is distributed under dual licence - - - BSD See included LICENSE.txt file - - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html -===========================================================================**/ -#ifndef __clitkExtractImageFilter_h -#define __clitkExtractImageFilter_h -#include "itkImageToImageFilter.h" -#include "itkSmartPointer.h" -#include "itkExtractImageFilterRegionCopier.h" - -namespace clitk -{ - -template -class ITK_EXPORT ExtractImageFilter: - public itk::ImageToImageFilter -{ -public: - /** Standard class typedefs. */ - typedef ExtractImageFilter Self; - typedef itk::ImageToImageFilter Superclass; - typedef itk::SmartPointer Pointer; - typedef itk::SmartPointer ConstPointer; - - /** Method for creation through the object factory. */ - itkNewMacro(Self); - - /** Run-time type information (and related methods). */ - itkTypeMacro(ExtractImageFilter, ImageToImageFilter); - - /** Image type information. */ - typedef TInputImage InputImageType; - typedef TOutputImage OutputImageType; - - /** Typedef to describe the output and input image region types. */ - typedef typename TOutputImage::RegionType OutputImageRegionType; - typedef typename TInputImage::RegionType InputImageRegionType; - - /** Typedef to describe the type of pixel. */ - typedef typename TOutputImage::PixelType OutputImagePixelType; - typedef typename TInputImage::PixelType InputImagePixelType; - - /** Typedef to describe the output and input image index and size types. */ - typedef typename TOutputImage::IndexType OutputImageIndexType; - typedef typename TInputImage::IndexType InputImageIndexType; - typedef typename TOutputImage::SizeType OutputImageSizeType; - typedef typename TInputImage::SizeType InputImageSizeType; - - /** ImageDimension enumeration */ - itkStaticConstMacro(InputImageDimension, unsigned int, - TInputImage::ImageDimension); - itkStaticConstMacro(OutputImageDimension, unsigned int, - TOutputImage::ImageDimension); - - typedef itk::ImageToImageFilterDetail::ExtractImageFilterRegionCopier< - itkGetStaticConstMacro(InputImageDimension), - itkGetStaticConstMacro(OutputImageDimension)> ExtractImageFilterRegionCopierType; - - void SetExtractionRegion(InputImageRegionType extractRegion); - itkGetMacro(ExtractionRegion, InputImageRegionType); - -#ifdef ITK_USE_CONCEPT_CHECKING - /** Begin concept checking */ - itkConceptMacro(InputCovertibleToOutputCheck, - (itk::Concept::Convertible)); - /** End concept checking */ -#endif - -protected: - ExtractImageFilter(); - ~ExtractImageFilter() {}; - void PrintSelf(std::ostream& os, itk::Indent indent) const; - - - virtual void GenerateOutputInformation(); - - - virtual void CallCopyOutputRegionToInputRegion(InputImageRegionType &destRegion, - const OutputImageRegionType &srcRegion); - - - void ThreadedGenerateData(const OutputImageRegionType& outputRegionForThread, - int threadId ); - InputImageRegionType m_ExtractionRegion; - OutputImageRegionType m_OutputImageRegion; - -private: - ExtractImageFilter(const Self&); //purposely not implemented - void operator=(const Self&); //purposely not implemented - -}; - - -} // end namespace itk - -#ifndef ITK_MANUAL_INSTANTIATION -#include "clitkExtractImageFilter.txx" -#endif - -#endif diff --git a/registration/clitkExtractImageFilter.txx b/registration/clitkExtractImageFilter.txx deleted file mode 100644 index d321f9e..0000000 --- a/registration/clitkExtractImageFilter.txx +++ /dev/null @@ -1,274 +0,0 @@ -/*========================================================================= - Program: vv http://www.creatis.insa-lyon.fr/rio/vv - - Authors belong to: - - University of LYON http://www.universite-lyon.fr/ - - Léon Bérard cancer center http://www.centreleonberard.fr - - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the copyright notices for more information. - - It is distributed under dual licence - - - BSD See included LICENSE.txt file - - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html -===========================================================================**/ -#ifndef _clitkExtractImageFilter_txx -#define _clitkExtractImageFilter_txx -#include "clitkExtractImageFilter.h" -#include "itkImageRegionIterator.h" -#include "itkImageRegionConstIterator.h" -#include "itkObjectFactory.h" -#include "itkExtractImageFilterRegionCopier.h" -#include "itkProgressReporter.h" - - -namespace clitk -{ - -/** - * - */ -template -ExtractImageFilter -::ExtractImageFilter() -{ -} - - -/** - * - */ -template -void -ExtractImageFilter -::PrintSelf(std::ostream& os, itk::Indent indent) const -{ - Superclass::PrintSelf(os,indent); - - os << indent << "ExtractionRegion: " << m_ExtractionRegion << std::endl; - os << indent << "OutputImageRegion: " << m_OutputImageRegion << std::endl; -} - - -template -void -ExtractImageFilter -::CallCopyOutputRegionToInputRegion(InputImageRegionType &destRegion, - const OutputImageRegionType &srcRegion) -{ - ExtractImageFilterRegionCopierType extractImageRegionCopier; - extractImageRegionCopier(destRegion, srcRegion, m_ExtractionRegion); -} - - -template -void -ExtractImageFilter -::SetExtractionRegion(InputImageRegionType extractRegion) -{ - m_ExtractionRegion = extractRegion; - - unsigned int nonzeroSizeCount = 0; - InputImageSizeType inputSize = extractRegion.GetSize(); - OutputImageSizeType outputSize; - OutputImageIndexType outputIndex; - - /** - * check to see if the number of non-zero entries in the extraction region - * matches the number of dimensions in the output image. - **/ - for (unsigned int i = 0; i < InputImageDimension; ++i) - { - if (inputSize[i]) - { - outputSize[nonzeroSizeCount] = inputSize[i]; - outputIndex[nonzeroSizeCount] = extractRegion.GetIndex()[i]; - nonzeroSizeCount++; - } - } - - if (nonzeroSizeCount != OutputImageDimension) - { - itkExceptionMacro("Extraction Region not consistent with output image"); - } - - m_OutputImageRegion.SetSize(outputSize); - m_OutputImageRegion.SetIndex(outputIndex); - this->Modified(); -} - - - -/** - * ExtractImageFilter can produce an image which is a different resolution - * than its input image. As such, ExtractImageFilter needs to provide an - * implementation for GenerateOutputInformation() in order to inform - * the pipeline execution model. The original documentation of this - * method is below. - * - * \sa ProcessObject::GenerateOutputInformaton() - */ -template -void -ExtractImageFilter -::GenerateOutputInformation() -{ - // do not call the superclass' implementation of this method since - // this filter allows the input and the output to be of different dimensions - - // get pointers to the input and output - typename Superclass::OutputImagePointer outputPtr = this->GetOutput(); - typename Superclass::InputImageConstPointer inputPtr = this->GetInput(); - - if ( !outputPtr || !inputPtr) - { - return; - } - - // Set the output image size to the same value as the extraction region. - outputPtr->SetLargestPossibleRegion( m_OutputImageRegion ); - - // Set the output spacing and origin - const itk::ImageBase *phyData; - - phyData - = dynamic_cast*>(this->GetInput()); - - if (phyData) - { - // Copy what we can from the image from spacing and origin of the input - // This logic needs to be augmented with logic that select which - // dimensions to copy - - unsigned int i; - const typename InputImageType::SpacingType& - inputSpacing = inputPtr->GetSpacing(); - const typename InputImageType::DirectionType& - inputDirection = inputPtr->GetDirection(); - const typename InputImageType::PointType& - inputOrigin = inputPtr->GetOrigin(); - - typename OutputImageType::SpacingType outputSpacing; - typename OutputImageType::DirectionType outputDirection; - typename OutputImageType::PointType outputOrigin; - - if ( static_cast(OutputImageDimension) > - static_cast(InputImageDimension ) ) - { - // copy the input to the output and fill the rest of the - // output with zeros. - for (i=0; i < InputImageDimension; ++i) - { - outputSpacing[i] = inputSpacing[i]; - outputOrigin[i] = inputOrigin[i]; - for (unsigned int dim = 0; dim < InputImageDimension; ++dim) - { - outputDirection[i][dim] = inputDirection[i][dim]; - } - } - for (; i < OutputImageDimension; ++i) - { - outputSpacing[i] = 1.0; - outputOrigin[i] = 0.0; - for (unsigned int dim = 0; dim < InputImageDimension; ++dim) - { - outputDirection[i][dim] = 0.0; - } - outputDirection[i][i] = 1.0; - } - } - else - { - // copy the non-collapsed part of the input spacing and origing to the output - int nonZeroCount = 0; - for (i=0; i < InputImageDimension; ++i) - { - if (m_ExtractionRegion.GetSize()[i]) - { - outputSpacing[nonZeroCount] = inputSpacing[i]; - outputOrigin[nonZeroCount] = inputOrigin[i]; - int nonZeroCount2 = 0; - for (unsigned int dim = 0; dim < InputImageDimension; ++dim) - { - if (m_ExtractionRegion.GetSize()[dim]) - { - outputDirection[nonZeroCount][nonZeroCount2] = - inputDirection[i][dim]; - ++nonZeroCount2; - } - } - nonZeroCount++; - } - } - } - - // set the spacing and origin - outputPtr->SetSpacing( outputSpacing ); - outputPtr->SetDirection( outputDirection ); - outputPtr->SetOrigin( outputOrigin ); - outputPtr->SetNumberOfComponentsPerPixel(inputPtr->GetNumberOfComponentsPerPixel() ); - } - else - { - // pointer could not be cast back down - itkExceptionMacro(<< "itk::ExtractImageFilter::GenerateOutputInformation " - << "cannot cast input to " - << typeid(itk::ImageBase*).name() ); - } -} - -/** - * ExtractImageFilter can be implemented as a multithreaded filter. - * Therefore, this implementation provides a ThreadedGenerateData() - * routine which is called for each processing thread. The output - * image data is allocated automatically by the superclass prior to - * calling ThreadedGenerateData(). ThreadedGenerateData can only - * write to the portion of the output image specified by the - * parameter "outputRegionForThread" - * - * \sa ImageToImageFilter::ThreadedGenerateData(), - * ImageToImageFilter::GenerateData() - */ -template -void -ExtractImageFilter -::ThreadedGenerateData(const OutputImageRegionType& outputRegionForThread, - int threadId) -{ - itkDebugMacro(<<"Actually executing"); - - // Get the input and output pointers - typename Superclass::InputImageConstPointer inputPtr = this->GetInput(); - typename Superclass::OutputImagePointer outputPtr = this->GetOutput(); - - // support progress methods/callbacks - itk::ProgressReporter progress(this, threadId, outputRegionForThread.GetNumberOfPixels()); - - // Define the portion of the input to walk for this thread - InputImageRegionType inputRegionForThread; - this->CallCopyOutputRegionToInputRegion(inputRegionForThread, outputRegionForThread); - - // Define the iterators. - typedef itk::ImageRegionIterator OutputIterator; - typedef itk::ImageRegionConstIterator InputIterator; - - OutputIterator outIt(outputPtr, outputRegionForThread); - InputIterator inIt(inputPtr, inputRegionForThread); - - // walk the output region, and sample the input image - while( !outIt.IsAtEnd() ) - { - // copy the input pixel to the output - outIt.Set( static_cast(inIt.Get())); - ++outIt; - ++inIt; - progress.CompletedPixel(); - } -} - -} // end namespace clitk - -#endif