From: schaerer Date: Fri, 3 Sep 2010 09:43:14 +0000 (+0000) Subject: new gengetopt versions don't seem to like capital letters X-Git-Tag: v1.2.0~416 X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=b19b2e28476b45595584110623b360e1b6edbb5a;p=clitk.git new gengetopt versions don't seem to like capital letters --- diff --git a/.vimrc b/.vimrc index 97cf20f..216453c 100644 --- a/.vimrc +++ b/.vimrc @@ -6,5 +6,5 @@ set expandtab "set cino={.5s,e-.5s,^-.5s set shiftwidth=2 -set makeprg=${HOME}/workspace/cvs/clitk3/fast_make.sh +set makeprg=${HOME}/clitk3/fast_make.sh set grepprg=clgrep diff --git a/registration/clitkBLUTDIR.ggo b/registration/clitkBLUTDIR.ggo index 152c67f..5a98d1d 100755 --- a/registration/clitkBLUTDIR.ggo +++ b/registration/clitkBLUTDIR.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 11 Jan 2009 10.35 -Package "clitk" -Version "Register 2 images using optimized BLUT FFD..." +package "clitk" +version "Register 2 images using optimized BLUT FFD..." option "config" - "Config file" string no diff --git a/registration/clitkBSplineDeformableRegistration.ggo b/registration/clitkBSplineDeformableRegistration.ggo index 2853860..f2fea65 100755 --- a/registration/clitkBSplineDeformableRegistration.ggo +++ b/registration/clitkBSplineDeformableRegistration.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 15 July 2008 16.35 -Package "clitk" -Version "Register 2 images using optimized ITK FFD (high memory requirements) or BLUT FFD. Both implementations are provided, mainly for debugging purposes.." +package "clitk" +version "Register 2 images using optimized ITK FFD (high memory requirements) or BLUT FFD. Both implementations are provided, mainly for debugging purposes.." option "config" - "Config file" string no diff --git a/registration/clitkBSplinePyramid.ggo b/registration/clitkBSplinePyramid.ggo index 823135e..b907900 100644 --- a/registration/clitkBSplinePyramid.ggo +++ b/registration/clitkBSplinePyramid.ggo @@ -1,5 +1,5 @@ #File clitkBSplinePyramid.ggo -Package "clitkBSplinePyramid" +package "clitkBSplinePyramid" version "1.0" purpose "Down (or Up) sample with a factor 2 using Bspline pyramids. BSplineDownsampleImageFilter is BUGGED! See the ITK post of jvdmb@hotmail.com." diff --git a/registration/clitkCalculateTRE.ggo b/registration/clitkCalculateTRE.ggo index 3a79d16..e6b42f6 100755 --- a/registration/clitkCalculateTRE.ggo +++ b/registration/clitkCalculateTRE.ggo @@ -1,5 +1,5 @@ #File clitkCalculateTRE.ggo -Package "clitkCalculateTRE" +package "clitkCalculateTRE" version "1.0" purpose "Calculate TRE: give a reference point list and 1 or more target point lists. In case of the latter, the number of DVF (or the size of the 4th D) given should match the number of lists. Use --shipFirst to skip the first phase of a 4D DVF. General summarizes for all points (mean, SD, max) in magnitude and par component. Tre and warp gives all values for all points. " diff --git a/registration/clitkConvertBSplineDeformableTransformToVF.ggo b/registration/clitkConvertBSplineDeformableTransformToVF.ggo index 1ee3f8f..e20defb 100755 --- a/registration/clitkConvertBSplineDeformableTransformToVF.ggo +++ b/registration/clitkConvertBSplineDeformableTransformToVF.ggo @@ -1,5 +1,5 @@ #File clitkConvertBSplineDeformableTransformToVF.ggo -Package "clitkConvertBSplineDeformableTransformToVF" +package "clitkConvertBSplineDeformableTransformToVF" version "1.0" purpose "Convert a BSpline transform to a DVF with given properties" diff --git a/registration/clitkConvertPointList.ggo b/registration/clitkConvertPointList.ggo index 9c7ac9e..fe45050 100755 --- a/registration/clitkConvertPointList.ggo +++ b/registration/clitkConvertPointList.ggo @@ -1,5 +1,5 @@ #File clitkConvertPointList.ggo -Package "clitkConvertPointList" +package "clitkConvertPointList" version "1.0" purpose "Convert IX point pair lists (generated using the software described in Murphy2008,MICCAI) to a vv point pair lists" diff --git a/registration/clitkDemonsDeformableRegistration.ggo b/registration/clitkDemonsDeformableRegistration.ggo index bb58207..60cefb1 100755 --- a/registration/clitkDemonsDeformableRegistration.ggo +++ b/registration/clitkDemonsDeformableRegistration.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 13 Februari 2009 16.35 -Package "clitk" -Version "Apply Demons registration between (2D or 3D) images..." +package "clitk" +version "Apply Demons registration between (2D or 3D) images..." option "config" - "Config file" string no diff --git a/registration/clitkMatrixTransformToVF.ggo b/registration/clitkMatrixTransformToVF.ggo index e30742f..0feed94 100755 --- a/registration/clitkMatrixTransformToVF.ggo +++ b/registration/clitkMatrixTransformToVF.ggo @@ -1,5 +1,5 @@ #File clitkMatrixTransformToVF.ggo -Package "clitkMatrixTransformToVF" +package "clitkMatrixTransformToVF" version "1.0" purpose "Convert a matrix to a DVF with given properties" diff --git a/registration/clitkMultiResolutionPyramid.ggo b/registration/clitkMultiResolutionPyramid.ggo index 91f13bf..28952ac 100644 --- a/registration/clitkMultiResolutionPyramid.ggo +++ b/registration/clitkMultiResolutionPyramid.ggo @@ -1,5 +1,5 @@ #File clitkMultiResolutionPyramid.ggo -Package "clitkMultiResolutionPyramid" +package "clitkMultiResolutionPyramid" version "1.0" purpose "Compute the multi-resolution (MR) image pyramid. The conventional filter will also modify the image at the original resolution, the recursive not. The spatio-temporal filters leave the last dimension untouched." diff --git a/registration/clitkPointTrajectory.ggo b/registration/clitkPointTrajectory.ggo index b95e0c3..559d598 100755 --- a/registration/clitkPointTrajectory.ggo +++ b/registration/clitkPointTrajectory.ggo @@ -1,5 +1,5 @@ #File clitkPointTrajectory.ggo -Package "clitkPointTrajectory" +package "clitkPointTrajectory" version "1.0" purpose "Compute the cyclic trajectory of a point based input transform. The transform can be given by N lists of (manually identified) landmarks, a 4DDVF or a ST transform. Interpolation is performed between " diff --git a/registration/clitkResampleBSplineDeformableTransform.ggo b/registration/clitkResampleBSplineDeformableTransform.ggo index 0dc6054..1317332 100644 --- a/registration/clitkResampleBSplineDeformableTransform.ggo +++ b/registration/clitkResampleBSplineDeformableTransform.ggo @@ -1,5 +1,5 @@ #File clitkResampleBSplineDeformableTransform.ggo -Package "clitkResampleBSplineDeformableTransform" +package "clitkResampleBSplineDeformableTransform" version "1.0" purpose "Resample the B-spline control point grid to given properties. Coefficients are resampled to values with the desired properties and reconverted to coefficients " diff --git a/registration/clitkSelectPoints.ggo b/registration/clitkSelectPoints.ggo index 6c15fae..692c878 100755 --- a/registration/clitkSelectPoints.ggo +++ b/registration/clitkSelectPoints.ggo @@ -1,5 +1,5 @@ #File clitkSelectPoints.ggo -Package "clitkSelectPoints" +package "clitkSelectPoints" version "1.0" purpose "Perform a selection of points on the reference and target lists of points, based on criteria applied to the reference list." diff --git a/registration/clitkShapedBLUTSpatioTemporalDIR.ggo b/registration/clitkShapedBLUTSpatioTemporalDIR.ggo index 43b7ea1..299de1b 100755 --- a/registration/clitkShapedBLUTSpatioTemporalDIR.ggo +++ b/registration/clitkShapedBLUTSpatioTemporalDIR.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 15 Jan 2009 10.35 -Package "clitk" -Version "Deform a volume to match a temporal sequence using a spatio-temporal deformation model. By setting the shape of the model, you modify the temporal constraints applied to the cyclic trajectory model." +package "clitk" +version "Deform a volume to match a temporal sequence using a spatio-temporal deformation model. By setting the shape of the model, you modify the temporal constraints applied to the cyclic trajectory model." option "config" - "Config file" string no diff --git a/tools/clitkBSplineCoefficientsToValues.ggo b/tools/clitkBSplineCoefficientsToValues.ggo index 41d6688..69d303b 100644 --- a/tools/clitkBSplineCoefficientsToValues.ggo +++ b/tools/clitkBSplineCoefficientsToValues.ggo @@ -1,5 +1,5 @@ #File clitkBSplineCoefficientsToValues.ggo -Package "clitkBSplineCoefficientsToValues" +package "clitkBSplineCoefficientsToValues" version "1.0" purpose "" diff --git a/tools/clitkBackProjectImage.ggo b/tools/clitkBackProjectImage.ggo index 12a2a6c..24e1de1 100755 --- a/tools/clitkBackProjectImage.ggo +++ b/tools/clitkBackProjectImage.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 24 February 2009 16.35 -Package "clitk" -Version "Back project a 2D image with cone-beam geometry" +package "clitk" +version "Back project a 2D image with cone-beam geometry" option "config" - "Config file" string no diff --git a/tools/clitkChangeImageOrientation.ggo b/tools/clitkChangeImageOrientation.ggo index 1470d13..ebda22c 100755 --- a/tools/clitkChangeImageOrientation.ggo +++ b/tools/clitkChangeImageOrientation.ggo @@ -1,5 +1,5 @@ #File clitkChangeImageOrientation.ggo -Package "clitkChangeImageOrientation" +package "clitkChangeImageOrientation" version "1.0" purpose "" diff --git a/tools/clitkCombineImage.ggo b/tools/clitkCombineImage.ggo index 9ad4023..a8e7c17 100755 --- a/tools/clitkCombineImage.ggo +++ b/tools/clitkCombineImage.ggo @@ -1,5 +1,5 @@ #File clitkCombineImage.ggo -Package "clitkCombineImage" +package "clitkCombineImage" version "1.0" purpose "" diff --git a/tools/clitkComposeVF.ggo b/tools/clitkComposeVF.ggo index ac2b8dd..52f3e20 100755 --- a/tools/clitkComposeVF.ggo +++ b/tools/clitkComposeVF.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 20 August 16.35 -Package "clitk" -Version "Read two vector fields (.mhd, .vf, ..) and compose them using linear interpolation" +package "clitk" +version "Read two vector fields (.mhd, .vf, ..) and compose them using linear interpolation" option "config" - "Config file" string no option "input1" i "Input1 VF filename" string yes diff --git a/tools/clitkConeBeamProjectImage.ggo b/tools/clitkConeBeamProjectImage.ggo index 945b96d..9e9772e 100755 --- a/tools/clitkConeBeamProjectImage.ggo +++ b/tools/clitkConeBeamProjectImage.ggo @@ -1,6 +1,6 @@ #File clitkConeBeamProjectImage.ggo -Package "clitk" -Version "Project a 3D image with cone-beam geometry" +package "clitk" +version "Project a 3D image with cone-beam geometry" option "config" - "Config file" string no diff --git a/tools/clitkCropImage.ggo b/tools/clitkCropImage.ggo index d808921..ce5eab1 100755 --- a/tools/clitkCropImage.ggo +++ b/tools/clitkCropImage.ggo @@ -1,5 +1,5 @@ #File clitkCropImage.ggo -Package "clitkCropImage" +package "clitkCropImage" version "1.0" purpose "Reduce the image size by removing regions at the lower and upper end." diff --git a/tools/clitkDicomRTStructInfo.ggo b/tools/clitkDicomRTStructInfo.ggo index 594de5d..4d4021a 100644 --- a/tools/clitkDicomRTStructInfo.ggo +++ b/tools/clitkDicomRTStructInfo.ggo @@ -1,5 +1,5 @@ # file clitkDicomRTStructInfo.ggo -Package "clitk" +package "clitk" version "Read and print DICOM RT Structure set file (contours)" option "config" - "Config file" string no diff --git a/tools/clitkExtractSlice.ggo b/tools/clitkExtractSlice.ggo index 9f24736..e963357 100755 --- a/tools/clitkExtractSlice.ggo +++ b/tools/clitkExtractSlice.ggo @@ -1,5 +1,5 @@ #File clitkExtractSlice.ggo -Package "clitkExtractSlice" +package "clitkExtractSlice" version "1.0" purpose "Extract a slice: will collapse the dimension given by axe, retaining only the index given by slice." diff --git a/tools/clitkFilter.ggo b/tools/clitkFilter.ggo index 6cceb75..2eb2bc8 100755 --- a/tools/clitkFilter.ggo +++ b/tools/clitkFilter.ggo @@ -1,5 +1,5 @@ #File clitkFilter.ggo -Package "clitkFilter" +package "clitkFilter" version "1.0" purpose "" diff --git a/tools/clitkFlipImage.ggo b/tools/clitkFlipImage.ggo index 9eabf27..f8d1a63 100755 --- a/tools/clitkFlipImage.ggo +++ b/tools/clitkFlipImage.ggo @@ -1,5 +1,5 @@ #File clitkFlipImage.ggo -Package "clitkFlipImage" +package "clitkFlipImage" version "1.0" purpose "" diff --git a/tools/clitkGetDirection.ggo b/tools/clitkGetDirection.ggo index a9c70a5..9179799 100755 --- a/tools/clitkGetDirection.ggo +++ b/tools/clitkGetDirection.ggo @@ -1,5 +1,5 @@ #File clitkGetDirection.ggo -Package "clitkGetDirection" +package "clitkGetDirection" version "1.0" purpose "" diff --git a/tools/clitkGetOrigin.ggo b/tools/clitkGetOrigin.ggo index 221498d..4af7499 100755 --- a/tools/clitkGetOrigin.ggo +++ b/tools/clitkGetOrigin.ggo @@ -1,5 +1,5 @@ #File clitkGetOrigin.ggo -Package "clitkGetOrigin" +package "clitkGetOrigin" version "1.0" purpose "" diff --git a/tools/clitkGetSize.ggo b/tools/clitkGetSize.ggo index 7243283..2fbb51b 100755 --- a/tools/clitkGetSize.ggo +++ b/tools/clitkGetSize.ggo @@ -1,5 +1,5 @@ #File clitkGetSize.ggo -Package "clitkGetSize" +package "clitkGetSize" version "1.0" purpose "" diff --git a/tools/clitkGetSpacing.ggo b/tools/clitkGetSpacing.ggo index f7a37e2..9cdb225 100755 --- a/tools/clitkGetSpacing.ggo +++ b/tools/clitkGetSpacing.ggo @@ -1,5 +1,5 @@ #File clitkGetSpacing.ggo -Package "clitkGetSpacing" +package "clitkGetSpacing" version "1.0" purpose "" diff --git a/tools/clitkImageLog.ggo b/tools/clitkImageLog.ggo index 783549f..0f40682 100755 --- a/tools/clitkImageLog.ggo +++ b/tools/clitkImageLog.ggo @@ -1,5 +1,5 @@ # file clitkImageLog.ggo -Package "clitk" +package "clitk" version "Perform a inverse normalized log on the image" option "config" - "Config file" string no diff --git a/tools/clitkImageMoment.ggo b/tools/clitkImageMoment.ggo index 4bdd355..12f8895 100755 --- a/tools/clitkImageMoment.ggo +++ b/tools/clitkImageMoment.ggo @@ -1,5 +1,5 @@ #File clitkImageMoment.ggo -Package "clitkImageMoment" +package "clitkImageMoment" version "1.0" purpose "Calculate the image moment: the center of gravity" diff --git a/tools/clitkImageStatistics.ggo b/tools/clitkImageStatistics.ggo index efc044d..863dfbd 100755 --- a/tools/clitkImageStatistics.ggo +++ b/tools/clitkImageStatistics.ggo @@ -1,5 +1,5 @@ #File clitkImageStatistics.ggo -Package "clitkImageStatistics" +package "clitkImageStatistics" version "1.0" purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s)" diff --git a/tools/clitkImageToVectorImage.ggo b/tools/clitkImageToVectorImage.ggo index af0f0f5..f9751a0 100755 --- a/tools/clitkImageToVectorImage.ggo +++ b/tools/clitkImageToVectorImage.ggo @@ -1,5 +1,5 @@ #File clitkImageToVectorImage.ggo -Package "clitkImageToVectorImage" +package "clitkImageToVectorImage" version "1.0" purpose "Compose 3 images to 1 vector image" diff --git a/tools/clitkImageWarp.ggo b/tools/clitkImageWarp.ggo index a6c8853..520ff52 100644 --- a/tools/clitkImageWarp.ggo +++ b/tools/clitkImageWarp.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 13 August 19.35 -Package "clitk" -Version "Read an Image (short, char or float; 2D or 3D) and a vector field (float, 2D or 3D) and deform the input through backward or forward mapping." +package "clitk" +version "Read an Image (short, char or float; 2D or 3D) and a vector field (float, 2D or 3D) and deform the input through backward or forward mapping." option "config" - "Config file" string no option "verbose" v "Verbose" flag off diff --git a/tools/clitkMergeSequence.ggo b/tools/clitkMergeSequence.ggo index 5354c1f..179c03a 100755 --- a/tools/clitkMergeSequence.ggo +++ b/tools/clitkMergeSequence.ggo @@ -2,8 +2,8 @@ #Author: Jef Vandemeulebroucke #Date : Tue 15 June 16.35 -Package "clitk" -Version "Read a series a nD images (unnamed inputs) and merge them to a (n+1)D image" +package "clitk" +version "Read a series a nD images (unnamed inputs) and merge them to a (n+1)D image" option "config" - "Config file" string no option "spacing" s "Spacing for the new dimension" double no default="1" diff --git a/tools/clitkMirrorPadImage.ggo b/tools/clitkMirrorPadImage.ggo index c02bf21..5f7d6ee 100755 --- a/tools/clitkMirrorPadImage.ggo +++ b/tools/clitkMirrorPadImage.ggo @@ -1,5 +1,5 @@ #File clitkMirrorPadImage.ggo -Package "clitkMirrorPadImage" +package "clitkMirrorPadImage" version "1.0" purpose "" diff --git a/tools/clitkPermuteAxes.ggo b/tools/clitkPermuteAxes.ggo index 32c2f6b..7962ac4 100755 --- a/tools/clitkPermuteAxes.ggo +++ b/tools/clitkPermuteAxes.ggo @@ -1,5 +1,5 @@ #File clitkPermuteAxes.ggo -Package "clitkPermuteAxes" +package "clitkPermuteAxes" version "1.0" purpose "" diff --git a/tools/clitkSetDirection.ggo b/tools/clitkSetDirection.ggo index 45332ba..f79a4f1 100755 --- a/tools/clitkSetDirection.ggo +++ b/tools/clitkSetDirection.ggo @@ -1,5 +1,5 @@ #File clitkSetDirection.ggo -Package "clitkSetDirection" +package "clitkSetDirection" version "1.0" purpose "" diff --git a/tools/clitkSetOrigin.ggo b/tools/clitkSetOrigin.ggo index 8f550d3..a2c3392 100755 --- a/tools/clitkSetOrigin.ggo +++ b/tools/clitkSetOrigin.ggo @@ -1,5 +1,5 @@ #File clitkSetOrigin.ggo -Package "clitkSetOrigin" +package "clitkSetOrigin" version "1.0" purpose "Set the origin field of a generic image" diff --git a/tools/clitkSetSpacing.ggo b/tools/clitkSetSpacing.ggo index 1320c3e..5df5888 100755 --- a/tools/clitkSetSpacing.ggo +++ b/tools/clitkSetSpacing.ggo @@ -1,5 +1,5 @@ #File clitkSetSpacing.ggo -Package "clitkSetSpacing" +package "clitkSetSpacing" version "1.0" purpose "" diff --git a/tools/clitkVFConvert.ggo b/tools/clitkVFConvert.ggo index 32eec43..207ed66 100755 --- a/tools/clitkVFConvert.ggo +++ b/tools/clitkVFConvert.ggo @@ -1,5 +1,5 @@ #File clitkVFConvert.ggo -Package "clitkVFConvert" +package "clitkVFConvert" version "1.0" purpose "Convert file format" diff --git a/tools/clitkValuesToBSplineCoefficients.ggo b/tools/clitkValuesToBSplineCoefficients.ggo index 699f60a..f059073 100644 --- a/tools/clitkValuesToBSplineCoefficients.ggo +++ b/tools/clitkValuesToBSplineCoefficients.ggo @@ -1,5 +1,5 @@ #File clitkValuesToBSplineCoefficients.ggo -Package "clitkValuesToBSplineCoefficients" +package "clitkValuesToBSplineCoefficients" version "1.0" purpose "" diff --git a/tools/clitkVectorImageToImage.ggo b/tools/clitkVectorImageToImage.ggo index 8bca8ed..ecae271 100755 --- a/tools/clitkVectorImageToImage.ggo +++ b/tools/clitkVectorImageToImage.ggo @@ -1,5 +1,5 @@ #File clitkVectorImageToImage.ggo -Package "clitkVectorImageToImage" +package "clitkVectorImageToImage" version "1.0" purpose "Extract a component image from a vector image"