From: Pierre Gueth <pgueth@ccage002.in2p3.fr>
Date: Fri, 24 Jun 2011 09:10:45 +0000 (+0200)
Subject: refactor
X-Git-Tag: v1.4.0~177^2~21
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=d3cab00691791666f3edb0e24a931263312a6222;p=clitk.git

refactor
---

diff --git a/cluster_tools/gate_power_merge.sh b/cluster_tools/gate_power_merge.sh
index c1c4755..404409b 100755
--- a/cluster_tools/gate_power_merge.sh
+++ b/cluster_tools/gate_power_merge.sh
@@ -150,86 +150,90 @@ end_bar
 echo "  ${indent}merged ${count} files"
 }
 
-rundir="${1?"provide run dir"}"
-nboutputdirs="$(find "${rundir}" -mindepth 1 -type d -name 'output*' | wc -l)"
-
-test ${nboutputdirs} -gt 0 || error "no output dir found"
-echo "found ${nboutputdirs} partial output dirs"
-
-outputdir="results"
-if [ "${rundir}" != "." -a "${rundir##*.}" != "${rundir}" ]
-then
-    outputdir="results.${rundir##*.}"
-fi
-outputdir="$(basename "${outputdir}")"
-echo "output dir is ${outputdir}"
-test -d "${outputdir}" && rm -r "${outputdir}"
-mkdir "${outputdir}"
-
-for outputfile in $(find "${rundir}" -regextype 'posix-extended' -type f -regex '.*\.(hdr|root|txt)' | awk -F '/' '{ print $NF }' | sort | uniq)
-do
-    indent="  ** "
+function merge_dispatcher {
+    local indent="  ** "
+    local outputfile="${1:?"provide output filename"}"
     echo "merging ${outputfile}"
 
-    partialoutputfiles="$(find "${rundir}" -type f -name "${outputfile}")"
-    nboutputfiles="$(echo "${partialoutputfiles}" | wc -l)"
+    local partialoutputfiles="$(find "${rundir}" -type f -name "${outputfile}")"
+    local nboutputfiles="$(echo "${partialoutputfiles}" | wc -l)"
     if test ${nboutputdirs} -ne ${nboutputfiles}
     then
         warning "missing files"
-        continue
+        return
     fi
 
-    firstpartialoutputfile="$(echo "${partialoutputfiles}" | head -n 1)"
-    firstpartialoutputextension="${firstpartialoutputfile##*.}"
+    local firstpartialoutputfile="$(echo "${partialoutputfiles}" | head -n 1)"
+    local firstpartialoutputextension="${firstpartialoutputfile##*.}"
     echo "${indent}testing file type on ${firstpartialoutputfile}"
 
     if test "${firstpartialoutputextension}" == "hdr"
     then
         echo "${indent}this is a analyse image"
-        mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
+        local mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
         merge_hdr_image "${mergedfile}" ${partialoutputfiles} || error "error while merging"
-        continue
+        return
     fi
 
     if test "${firstpartialoutputextension}" == "root"
     then
         echo "${indent}this is a root file"
-        mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
+        local mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
         merge_root "${mergedfile}" ${partialoutputfiles} || error "error while merging"
-        continue
+        return
     fi
 
     if test "${firstpartialoutputextension}" == "txt" && grep 'NumberOfEvent' "${firstpartialoutputfile}" > /dev/null
     then
         echo "${indent}this is a stat file"
-        mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
+        local mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
         merge_stat "${mergedfile}" ${partialoutputfiles} || error "error while merging"
-        continue
+        return
     fi
 
     if test "${firstpartialoutputextension}" == "txt" && grep 'Resol' "${firstpartialoutputfile}" > /dev/null
     then
-        resol="$(sed -nr '/Resol/s/^.*=\s+\((.+)\)\s*$/\1/p' "${firstpartialoutputfile}")"
-        resolx="$(echo "${resol}" | cut -d',' -f1)"
-        resoly="$(echo "${resol}" | cut -d',' -f2)"
-        resolz="$(echo "${resol}" | cut -d',' -f3)"
+        local resol="$(sed -nr '/Resol/s/^.*=\s+\((.+)\)\s*$/\1/p' "${firstpartialoutputfile}")"
+        local resolx="$(echo "${resol}" | cut -d',' -f1)"
+        local resoly="$(echo "${resol}" | cut -d',' -f2)"
+        local resolz="$(echo "${resol}" | cut -d',' -f3)"
         if test "${resol}" == "1,1,1"
         then
             echo "${indent}this is a txt integral value"
-            mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
+            local mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
             merge_txt_image "${mergedfile}" ${partialoutputfiles} || error "error while merging"
-            continue
+            return
         fi
         if test \( "${resolx}" == "1" -a "${resoly}" == "1" \) -o \( "${resoly}" == "1" -a "${resolz}" == "1" \) -o \( "${resolz}" == "1" -a "${resolx}" == "1" \)
         then
             echo "${indent}this is a txt profile"
-            mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
+            local mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
             merge_txt_image "${mergedfile}" ${partialoutputfiles} || error "error while merging"
-            continue
+            return
         fi
     fi
 
-
     warning "unknown file type"
+}
+
+rundir="${1?"provide run dir"}"
+nboutputdirs="$(find "${rundir}" -mindepth 1 -type d -name 'output*' | wc -l)"
+
+test ${nboutputdirs} -gt 0 || error "no output dir found"
+echo "found ${nboutputdirs} partial output dirs"
+
+outputdir="results"
+if [ "${rundir}" != "." -a "${rundir##*.}" != "${rundir}" ]
+then
+    outputdir="results.${rundir##*.}"
+fi
+outputdir="$(basename "${outputdir}")"
+echo "output dir is ${outputdir}"
+test -d "${outputdir}" && rm -r "${outputdir}"
+mkdir "${outputdir}"
+
+for outputfile in $(find "${rundir}" -regextype 'posix-extended' -type f -regex '.*\.(hdr|root|txt)' | awk -F '/' '{ print $NF }' | sort | uniq)
+do
+	merge_dispatcher "${outputfile}"
 done