From: tbaudier <thomas.baudier@creatis.insa-lyon.fr>
Date: Thu, 8 Feb 2018 14:49:57 +0000 (+0100)
Subject: Add -e output for qsub in gate_run_submit_cluster
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=e44dcd3c16d60ca0d7d1eaf54abb8bbc4f9e48b0;p=clitk.git

Add -e output for qsub in gate_run_submit_cluster
---

diff --git a/cluster_tools/gate_run_submit_cluster.sh b/cluster_tools/gate_run_submit_cluster.sh
index 904a0d7..a74429a 100755
--- a/cluster_tools/gate_run_submit_cluster.sh
+++ b/cluster_tools/gate_run_submit_cluster.sh
@@ -113,14 +113,15 @@ while test $NJOBS -gt 0; do
     then
         PROJECTGROUP=creatis
         qsub -o "${OUTPUTDIR}" \
-	     -l sps=1 \
+             -e "${OUTPUTDIR}" \
+             -l sps=1 \
              -N "gate.${RUNID}" \
              -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
              "${JOBFILE}" || error "submission error"
     else
         qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
-	    -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
-	    "${JOBFILE}" || error "submission error"
+      -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
+      "${JOBFILE}" || error "submission error"
     fi
 
     let NJOBS--
diff --git a/cluster_tools/gate_run_submit_cluster_nomove.sh b/cluster_tools/gate_run_submit_cluster_nomove.sh
index 47ad699..c3eb2f0 100755
--- a/cluster_tools/gate_run_submit_cluster_nomove.sh
+++ b/cluster_tools/gate_run_submit_cluster_nomove.sh
@@ -90,9 +90,9 @@ while test $NJOBS -gt 0; do
         echo "Launching Gate log in ${OUTPUTDIR}/gate_${NJOBS}.log"
         PARAM=\"${PARAM}\" INDEX=${NJOBS} INDEXMAX=${NJOBSMAX} OUTPUTDIR=${OUTPUTDIR}  RELEASEDIR=${RELEASEDIR} MACROFILE=${MACROFILE} MACRODIR=${MACRODIR} PBS_JOBID="local_${NJOBS}" bash "${JOBFILE}" > ${OUTPUTDIR}/gate_${NJOBS}.log &
     else
-	qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
-	    -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
-	    "${JOBFILE}" || error "submission error"
+  qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" -e "${OUTPUTDIR}" \
+      -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
+      "${JOBFILE}" || error "submission error"
     fi
 
     let NJOBS--