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Creatis software - clitk.git/log
dsarrut [Tue, 5 Oct 2010 09:30:11 +0000 (09:30 +0000)]
correct bug (copy message)
dsarrut [Mon, 4 Oct 2010 08:06:30 +0000 (08:06 +0000)]
documentation for tree.hh
dsarrut [Mon, 4 Oct 2010 08:06:16 +0000 (08:06 +0000)]
manage tree structures
dsarrut [Mon, 4 Oct 2010 08:05:25 +0000 (08:05 +0000)]
manage anatomical features DB
dsarrut [Mon, 4 Oct 2010 08:04:16 +0000 (08:04 +0000)]
error are now handled by exception
dsarrut [Mon, 4 Oct 2010 08:03:34 +0000 (08:03 +0000)]
add Anatomical DB to library
dsarrut [Mon, 4 Oct 2010 08:03:04 +0000 (08:03 +0000)]
now dump anatomical info (carina position) into a DB
dsarrut [Mon, 4 Oct 2010 07:54:45 +0000 (07:54 +0000)]
read carina position into DB
dsarrut [Mon, 4 Oct 2010 07:54:23 +0000 (07:54 +0000)]
add lower limits for lung (experimental)
dsarrut [Mon, 4 Oct 2010 07:52:56 +0000 (07:52 +0000)]
now dump anatomical info (carina position) into a DB
dsarrut [Mon, 4 Oct 2010 07:51:58 +0000 (07:51 +0000)]
add anatomical feature DB capability to a filter
dsarrut [Mon, 4 Oct 2010 07:49:21 +0000 (07:49 +0000)]
remove debug code
dsarrut [Mon, 4 Oct 2010 07:48:42 +0000 (07:48 +0000)]
add "get number of connected components" function
dsarrut [Mon, 4 Oct 2010 07:47:46 +0000 (07:47 +0000)]
add exception file
dsarrut [Mon, 4 Oct 2010 07:46:52 +0000 (07:46 +0000)]
error are now handled by exception
dsarrut [Mon, 4 Oct 2010 07:46:34 +0000 (07:46 +0000)]
Exception for error management
schaerer [Tue, 28 Sep 2010 11:23:12 +0000 (11:23 +0000)]
changes for CTest
srit [Wed, 22 Sep 2010 09:10:24 +0000 (09:10 +0000)]
Skip last level corrections
dsarrut [Wed, 22 Sep 2010 03:23:29 +0000 (03:23 +0000)]
add skipLastPyramidLevel option
srit [Tue, 21 Sep 2010 10:33:46 +0000 (10:33 +0000)]
Removed unused txx file
grevillot [Tue, 21 Sep 2010 09:37:33 +0000 (09:37 +0000)]
*** empty log message ***
srit [Thu, 16 Sep 2010 15:53:54 +0000 (15:53 +0000)]
Fusion window / level was rounded to int for no good reason
srit [Thu, 16 Sep 2010 15:53:15 +0000 (15:53 +0000)]
Fusion windows level is now 4 decimals
srit [Thu, 16 Sep 2010 15:51:10 +0000 (15:51 +0000)]
Attempt to solve Kumar's issue
srit [Thu, 16 Sep 2010 15:47:28 +0000 (15:47 +0000)]
Reformat with astyle, Kumar had to convert it to dos style
srit [Thu, 16 Sep 2010 13:45:42 +0000 (13:45 +0000)]
Problem with slot in previous commit. Corrected based on overlay example
srit [Thu, 16 Sep 2010 13:29:04 +0000 (13:29 +0000)]
Parsing fusion image from command line
srit [Thu, 16 Sep 2010 12:37:34 +0000 (12:37 +0000)]
Changed headers
srit [Thu, 16 Sep 2010 10:45:45 +0000 (10:45 +0000)]
Modified padding for empire
schaerer [Thu, 16 Sep 2010 08:38:15 +0000 (08:38 +0000)]
support for spaces in file names
srit [Wed, 15 Sep 2010 14:51:26 +0000 (14:51 +0000)]
Do pad before connecting components
srit [Wed, 15 Sep 2010 08:16:51 +0000 (08:16 +0000)]
There were some f***** differences between clitk2 and clitk3 in the BLUT. Tried to take clitk2 version which is more recent according to cvs. They don't look big but they have an effect. Please check!
srit [Mon, 13 Sep 2010 16:40:00 +0000 (16:40 +0000)]
Removed unrequired library linking
schaerer [Fri, 10 Sep 2010 12:51:37 +0000 (12:51 +0000)]
a hopefully better option parser for vv
srit [Fri, 10 Sep 2010 12:38:23 +0000 (12:38 +0000)]
Try to adapt the filter to Jef's clitk2 solution.
schaerer [Thu, 9 Sep 2010 15:32:19 +0000 (15:32 +0000)]
support for the precise flexmap
srit [Wed, 8 Sep 2010 17:48:56 +0000 (17:48 +0000)]
Implemented like option, only the origin is missing
srit [Wed, 8 Sep 2010 17:28:30 +0000 (17:28 +0000)]
Do not propose an option that you have removed!
dsarrut [Wed, 8 Sep 2010 14:14:08 +0000 (14:14 +0000)]
add thread verbose
dsarrut [Wed, 8 Sep 2010 14:13:38 +0000 (14:13 +0000)]
take image start index into account
dsarrut [Wed, 8 Sep 2010 14:11:21 +0000 (14:11 +0000)]
change ROIFilter to extractImageFilter
dsarrut [Wed, 8 Sep 2010 14:10:51 +0000 (14:10 +0000)]
update buffered region
srit [Wed, 8 Sep 2010 13:50:29 +0000 (13:50 +0000)]
Add float input to extract bones
dsarrut [Wed, 8 Sep 2010 13:05:43 +0000 (13:05 +0000)]
extract trachea skeleton
srit [Wed, 8 Sep 2010 12:53:57 +0000 (12:53 +0000)]
Added image info and meta-info
srit [Wed, 8 Sep 2010 12:50:43 +0000 (12:50 +0000)]
Hard code iamge information for Synergy since it's the only known source of his image (so far).
dsarrut [Wed, 8 Sep 2010 12:38:12 +0000 (12:38 +0000)]
add smooth option to extract bones
srit [Wed, 8 Sep 2010 12:04:44 +0000 (12:04 +0000)]
Account for window/level of fusion image
srit [Wed, 8 Sep 2010 09:56:52 +0000 (09:56 +0000)]
Add dicom RT dose to list of IO factories handled by clitk
srit [Wed, 8 Sep 2010 09:56:02 +0000 (09:56 +0000)]
Converted plastimatch dicom RT dose reader in ITK IO format.
schaerer [Tue, 7 Sep 2010 16:39:55 +0000 (16:39 +0000)]
improvements to the Dicom struct handling code, including better computation of extruding
depth based on actual contour spacing and not image spacing
dsarrut [Tue, 7 Sep 2010 10:11:19 +0000 (10:11 +0000)]
correct ggo (no upper case)
schaerer [Mon, 6 Sep 2010 14:57:09 +0000 (14:57 +0000)]
add SCAN files
schaerer [Mon, 6 Sep 2010 14:18:06 +0000 (14:18 +0000)]
minor fixes
schaerer [Fri, 3 Sep 2010 09:43:14 +0000 (09:43 +0000)]
new gengetopt versions don't seem to like capital letters
srit [Fri, 3 Sep 2010 08:44:57 +0000 (08:44 +0000)]
Removed writing of temp file
srit [Thu, 2 Sep 2010 09:39:03 +0000 (09:39 +0000)]
Removed Jef's tmp files
srit [Wed, 1 Sep 2010 15:21:36 +0000 (15:21 +0000)]
Formatting + hack for the empire challenge: remove lungs from air thresholding when computing air feature image.
srit [Tue, 31 Aug 2010 11:15:13 +0000 (11:15 +0000)]
Rolled back to version without smart pointers for vtkImageData.
srit [Mon, 30 Aug 2010 16:31:22 +0000 (16:31 +0000)]
Commented out hard coded temp file
srit [Mon, 30 Aug 2010 13:42:52 +0000 (13:42 +0000)]
Removed memory leak
srit [Mon, 30 Aug 2010 13:41:53 +0000 (13:41 +0000)]
Rolled back to version 1.7 because it was crashing with transforms. I couldn't figure out a better solution.
srit [Tue, 24 Aug 2010 09:27:36 +0000 (09:27 +0000)]
Wrong naming of the ggo libraries.
bouilhol [Wed, 18 Aug 2010 18:04:16 +0000 (18:04 +0000)]
workaround for bug in itk/gdcmDict.h : gdcm headers seem to need to be included
before the itk ones, otherwise there is a conflict between stdint.h and itkIntTypes.h
bouilhol [Wed, 18 Aug 2010 15:32:20 +0000 (15:32 +0000)]
workaround for bug in itk/gdcmDict.h : gdcm headers seem to need to be included
before the itk ones, otherwise there is a conflict between stdint.h and itkIntTypes.h
bharath [Thu, 12 Aug 2010 18:40:48 +0000 (18:40 +0000)]
with options for selecting outputs
bharath [Thu, 12 Aug 2010 18:39:58 +0000 (18:39 +0000)]
with matrix arg option
bharath [Thu, 12 Aug 2010 18:39:01 +0000 (18:39 +0000)]
Functionality to Delete Last Image
bharath [Thu, 12 Aug 2010 18:38:41 +0000 (18:38 +0000)]
Functionality to delete last image
bharath [Thu, 12 Aug 2010 12:06:48 +0000 (12:06 +0000)]
derived from ImageToImageGenericFilter for integrating it into vv
bharath [Thu, 12 Aug 2010 12:06:16 +0000 (12:06 +0000)]
Derived from ImageToImageGenericFilter for integrating into vv
bharath [Thu, 12 Aug 2010 09:00:53 +0000 (09:00 +0000)]
used vtkSmartPointer
bharath [Thu, 12 Aug 2010 08:58:30 +0000 (08:58 +0000)]
use of another vtkSmartPointer
bharath [Wed, 11 Aug 2010 20:59:29 +0000 (20:59 +0000)]
Added metric presets, interp GUIs
bharath [Wed, 11 Aug 2010 20:58:25 +0000 (20:58 +0000)]
Added Presets, GUI for metric, interp, etc.for AutoReg.
bharath [Wed, 11 Aug 2010 20:58:13 +0000 (20:58 +0000)]
added presets and GUI's for AutoReg
bharath [Wed, 11 Aug 2010 19:54:20 +0000 (19:54 +0000)]
used vtksmartpointer for vtkimagedata
bharath [Wed, 4 Aug 2010 17:37:47 +0000 (17:37 +0000)]
updated AutoRegister Overlay
bharath [Wed, 4 Aug 2010 17:37:29 +0000 (17:37 +0000)]
AutoRegister output overlayed
schaerer [Wed, 4 Aug 2010 16:38:00 +0000 (16:38 +0000)]
apparently this was too ambitious as well :-/
schaerer [Wed, 4 Aug 2010 16:19:24 +0000 (16:19 +0000)]
fix previous commit, sorry
schaerer [Wed, 4 Aug 2010 16:15:51 +0000 (16:15 +0000)]
attempt to fix some leaks. Note that vv still leaks: memory is never given back to the OS when an image is closed
schaerer [Wed, 4 Aug 2010 09:15:11 +0000 (09:15 +0000)]
a few improvements to the struct library, flush for better debug with DD,
and fix warning in plastimatch tool
srit [Tue, 3 Aug 2010 08:59:43 +0000 (08:59 +0000)]
Removed ggo template for affine registration
bharath [Mon, 2 Aug 2010 20:45:28 +0000 (20:45 +0000)]
reads from a config file and performs the registration
bharath [Mon, 2 Aug 2010 20:44:38 +0000 (20:44 +0000)]
Setoverlay function modified
bharath [Mon, 2 Aug 2010 17:08:27 +0000 (17:08 +0000)]
Config File for AffineRegistration Filter
bharath [Mon, 2 Aug 2010 16:49:46 +0000 (16:49 +0000)]
corrected some ReadFile functionality
schaerer [Mon, 2 Aug 2010 14:09:17 +0000 (14:09 +0000)]
fix string comparison
bharath [Sun, 1 Aug 2010 20:28:58 +0000 (20:28 +0000)]
Added AutoRegister..........
bharath [Sun, 1 Aug 2010 20:26:02 +0000 (20:26 +0000)]
remove unwanted struct
bharath [Sun, 1 Aug 2010 20:22:59 +0000 (20:22 +0000)]
Modified to use SetNextOutput function.
schaerer [Sun, 1 Aug 2010 15:33:05 +0000 (15:33 +0000)]
fix dependency problems
schaerer [Fri, 30 Jul 2010 13:38:59 +0000 (13:38 +0000)]
fix composition order bug; add panel position. Panel position settings are still widely untested
schaerer [Thu, 29 Jul 2010 16:22:46 +0000 (16:22 +0000)]
bugfix: can't assume clitkImageArithm has two inputs
schaerer [Thu, 29 Jul 2010 15:33:56 +0000 (15:33 +0000)]
cleanup
schaerer [Wed, 28 Jul 2010 14:39:28 +0000 (14:39 +0000)]
minor changes
schaerer [Wed, 28 Jul 2010 14:02:37 +0000 (14:02 +0000)]
clean binarize up in order to use it as a template
schaerer [Wed, 28 Jul 2010 13:42:59 +0000 (13:42 +0000)]
cosmetic
bharath [Tue, 27 Jul 2010 18:37:56 +0000 (18:37 +0000)]
Seg Fault dealth with