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Creatis software - clitk.git/log
David Sarrut [Thu, 2 Feb 2012 14:29:44 +0000 (15:29 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 08:39:08 +0000 (09:39 +0100)]
Add ROI tab
David Sarrut [Thu, 2 Feb 2012 08:38:45 +0000 (09:38 +0100)]
First version of new ROI tool (the goal is to put it into the main tab and allow dcm-rt-struct to be loaded)
David Sarrut [Wed, 1 Feb 2012 06:20:06 +0000 (07:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 31 Jan 2012 19:08:06 +0000 (20:08 +0100)]
Update CMakeLists after moving tools to deprecated
Simon Rit [Tue, 31 Jan 2012 18:50:43 +0000 (19:50 +0100)]
Moved from repository clitk to clitk.private/deprecated
Simon Rit [Mon, 30 Jan 2012 13:32:05 +0000 (14:32 +0100)]
Stop rebuilding vv.o everytime cmake is executed. Only do it when
vv/CMakeLists.txt is newer than vvToolsList.h
Romulo Pinho [Fri, 27 Jan 2012 15:31:09 +0000 (16:31 +0100)]
fusion and image colormaps are now equivalent
- changed value range to (1, 1)
Romulo Pinho [Fri, 27 Jan 2012 15:09:49 +0000 (16:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 27 Jan 2012 15:09:09 +0000 (16:09 +0100)]
corrected bug in fusion opacity with double values
Romulo Pinho [Fri, 27 Jan 2012 15:05:06 +0000 (16:05 +0100)]
corrected bug in fusion with double values
Romulo Pinho [Thu, 26 Jan 2012 14:35:00 +0000 (15:35 +0100)]
bug in mhd 4D creation
Romulo Pinho [Thu, 26 Jan 2012 13:06:44 +0000 (14:06 +0100)]
ComposeVF with type 0 as default
Romulo Pinho [Thu, 26 Jan 2012 13:05:51 +0000 (14:05 +0100)]
correction in ComposeVF options
Romulo Pinho [Thu, 26 Jan 2012 12:46:11 +0000 (13:46 +0100)]
accepts suffix for 4D mhd creation
Romulo Pinho [Wed, 25 Jan 2012 14:47:22 +0000 (15:47 +0100)]
changes in CoeffsToDVF interface
- affected tools...
Romulo Pinho [Wed, 25 Jan 2012 14:46:23 +0000 (15:46 +0100)]
new tool: clitkCoeffsToDVF
- converts a BLUT-coefficient image to a DVF
Romulo Pinho [Tue, 24 Jan 2012 13:50:43 +0000 (14:50 +0100)]
more robust clitkExtractLung
- quits with exception when no seed is found for trachea
Romulo Pinho [Thu, 19 Jan 2012 16:51:00 +0000 (17:51 +0100)]
refactoring...
- Put coeff to dvf function in separate file, as a global function
- Changed affected files/classes
Romulo Pinho [Thu, 19 Jan 2012 16:39:42 +0000 (17:39 +0100)]
image warping using B-Spline coefficients
- uses the resolution of the input image for the output
Romulo Pinho [Wed, 18 Jan 2012 17:28:16 +0000 (18:28 +0100)]
Invert VF from B-Spline coefficients
- Interpolate VF first, from coeffs, using --like image
Romulo Pinho [Wed, 18 Jan 2012 16:51:04 +0000 (17:51 +0100)]
VF composition with BSpline coefficients
- output resolution taken from --like image
Romulo Pinho [Tue, 10 Jan 2012 15:36:21 +0000 (16:36 +0100)]
invert Vf on given image grid with resampler
- linear interpolation (itk resampler's default)
- undoes previous version
Romulo Pinho [Tue, 10 Jan 2012 14:18:12 +0000 (15:18 +0100)]
invert VF on given image grid
- with --like option
David Sarrut [Thu, 5 Jan 2012 14:44:12 +0000 (15:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 4 Jan 2012 15:48:10 +0000 (16:48 +0100)]
Adapted crop for vector fields with partial specialization to generate
exceptions for AutoCrop of VF
Simon Rit [Wed, 4 Jan 2012 15:47:51 +0000 (16:47 +0100)]
Provide ADD_DEFAULT_VEC_IMAGE_TYPES for generic VF filters
David Sarrut [Wed, 4 Jan 2012 14:53:54 +0000 (15:53 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 28 Dec 2011 13:27:46 +0000 (14:27 +0100)]
BUG Don't try to change the VF color on cancel.
- Test the validity of the color returned by the QColorDialog before
changing the VF color.
Vivien Delmon [Tue, 27 Dec 2011 14:49:12 +0000 (15:49 +0100)]
Add Overlay properties to SaveState / ReadState
- Use vvSlicerManagers to Get/Set Overlay properties.
Vivien Delmon [Tue, 27 Dec 2011 14:35:44 +0000 (15:35 +0100)]
Add Fusion properties to SaveState / ReadState
- Add constness on QTreeWidgetItem.
- Use vvSlicerManagers to Get/Set Fusion properties.
Vivien Delmon [Tue, 27 Dec 2011 14:30:50 +0000 (15:30 +0100)]
Add constness some getters
Vivien Delmon [Tue, 27 Dec 2011 12:42:20 +0000 (13:42 +0100)]
Remove tmp files
- Remove tmp files after executing the script
- use mktemp instead of /tmp/$RANDOM
Romulo Pinho [Thu, 22 Dec 2011 16:50:48 +0000 (17:50 +0100)]
midpP: combine VF's after inverting and composing
Romulo Pinho [Thu, 22 Dec 2011 13:38:34 +0000 (14:38 +0100)]
use of coefficient images in mid-P creation
Romulo Pinho [Tue, 20 Dec 2011 17:24:36 +0000 (18:24 +0100)]
--focal_origin works again
Romulo Pinho [Tue, 20 Dec 2011 17:24:01 +0000 (18:24 +0100)]
Possibility to add a VTK image to vvImage
David Sarrut [Tue, 20 Dec 2011 06:44:55 +0000 (07:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 19 Dec 2011 13:22:17 +0000 (14:22 +0100)]
more robust motion mask script
Romulo Pinho [Fri, 16 Dec 2011 10:55:00 +0000 (11:55 +0100)]
dicom structure in cmd line
- --contour <FILE>
- in the same way as overlay/fusion/vf
Romulo Pinho [Thu, 15 Dec 2011 17:43:42 +0000 (18:43 +0100)]
motion masks with and without bands
David Sarrut [Thu, 15 Dec 2011 06:25:38 +0000 (07:25 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 14 Dec 2011 13:18:40 +0000 (14:18 +0100)]
Adapt CMakeLists to include it from other projects
Simon Rit [Wed, 14 Dec 2011 12:50:13 +0000 (13:50 +0100)]
Remove useless common.cmake inclusions
Vivien Delmon [Wed, 14 Dec 2011 09:07:24 +0000 (10:07 +0100)]
Add VTK_LIBRARIES variable for vtk < 5.8.0
Add VTK_LIBRARIES variable for vtk < 5.8.0 and use it.
Romulo Pinho [Tue, 13 Dec 2011 16:38:53 +0000 (17:38 +0100)]
midp masks use new clitkExtractLung version
Romulo Pinho [Tue, 13 Dec 2011 16:34:27 +0000 (17:34 +0100)]
new 4D files as output of midp script
David Sarrut [Tue, 13 Dec 2011 14:29:41 +0000 (15:29 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 13 Dec 2011 13:06:19 +0000 (14:06 +0100)]
Factorize CMakeLists
- Factorize CMakeLists to allow their use in other projects.
Romulo Pinho [Tue, 13 Dec 2011 09:49:47 +0000 (10:49 +0100)]
itkv4 migration
Romulo Pinho [Tue, 13 Dec 2011 09:35:10 +0000 (10:35 +0100)]
ExtractLung - Small corrections in verbose mode
David Sarrut [Tue, 13 Dec 2011 06:38:28 +0000 (07:38 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 12 Dec 2011 17:07:26 +0000 (18:07 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 12 Dec 2011 17:07:11 +0000 (18:07 +0100)]
Revert "itkv4 migration use itk::ThreadIdType"
This reverts commit
a6957c4825e83c61b977ec316dd841878617ffbd .
David Sarrut [Mon, 12 Dec 2011 15:19:00 +0000 (16:19 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 12 Dec 2011 14:31:49 +0000 (15:31 +0100)]
Trachea finding algorithm
- version used in LOLA11
- preserved original version
- new "type" parameter to choose between algorithms
- algorithm-specific params
Romulo Pinho [Mon, 12 Dec 2011 12:33:21 +0000 (13:33 +0100)]
working version of new trachea finding algo
- the one used in LOLA11
Gauthier Bouilhol [Mon, 12 Dec 2011 10:56:50 +0000 (11:56 +0100)]
Optional options corrected
Vivien Delmon [Thu, 8 Dec 2011 13:20:35 +0000 (14:20 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Thu, 8 Dec 2011 13:16:33 +0000 (14:16 +0100)]
Fixed fusion panel size and change default threshold values
+ Span image value on more columns to avoid interface motion when values
have more or less digits.
+ Use 1% as default threshold value and 30% as default transparency
value.
dbcache [Thu, 8 Dec 2011 12:38:52 +0000 (13:38 +0100)]
Added patient mask resampling
- corrects problem when using clitkCombineImage in the mid-P calcs
Simon Rit [Thu, 8 Dec 2011 10:05:30 +0000 (11:05 +0100)]
Applied clitk indentation
Simon Rit [Thu, 8 Dec 2011 10:03:15 +0000 (11:03 +0100)]
GateAsciiImageIO is now cross-platform using itksys::RegularExpression
David Sarrut [Mon, 5 Dec 2011 09:14:45 +0000 (10:14 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 5 Dec 2011 09:14:44 +0000 (10:14 +0100)]
Comment memory display
David Sarrut [Mon, 5 Dec 2011 09:14:18 +0000 (10:14 +0100)]
comment momory display
David Sarrut [Mon, 5 Dec 2011 09:13:44 +0000 (10:13 +0100)]
Correct LR or S1. Add Post S1 S3P. Add Post S1 and Ant S2RL
David Sarrut [Mon, 5 Dec 2011 09:12:24 +0000 (10:12 +0100)]
Start by removing object from target. Minors improvments
Simon Rit [Mon, 5 Dec 2011 07:58:31 +0000 (08:58 +0100)]
Fixed MSVC warning
Simon Rit [Mon, 5 Dec 2011 07:57:38 +0000 (08:57 +0100)]
Define mkstemp for MSVC. Not sure if it also works for other compilers
on Windows
Simon Rit [Mon, 5 Dec 2011 07:56:46 +0000 (08:56 +0100)]
Gate text file I/O is not cross-platform due to regex, compile only on unix
Simon Rit [Sun, 4 Dec 2011 17:18:08 +0000 (18:18 +0100)]
Add quotes in case variables are not defined
Simon Rit [Sun, 4 Dec 2011 17:06:31 +0000 (18:06 +0100)]
Use the gnugetopt.h header part of gengetopt instead of cygwin's
Simon Rit [Sun, 4 Dec 2011 16:35:50 +0000 (17:35 +0100)]
Subdirectory filters has been removed
Simon Rit [Sun, 4 Dec 2011 14:04:46 +0000 (15:04 +0100)]
Removed warnings
Vivien Delmon [Thu, 1 Dec 2011 10:49:01 +0000 (11:49 +0100)]
itk4 migration
- m_Parameters disapeared in itk4. Don't use it in our
ImageToImageMetric.
Vivien Delmon [Wed, 30 Nov 2011 09:45:50 +0000 (10:45 +0100)]
Remove warnings
- Remove warnings with -Wall
It remains some warning about gengetopt generated files
- Use ImageDimension instead of 3 in some filters
David Sarrut [Wed, 30 Nov 2011 06:42:24 +0000 (07:42 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 29 Nov 2011 14:23:31 +0000 (15:23 +0100)]
Bug #650 crash with --fusion and --overlay
- Check if the file exists before opening it
Vivien Delmon [Tue, 29 Nov 2011 12:56:33 +0000 (13:56 +0100)]
BUG seed_arg was used instead of seedRadius_arg
Vivien Delmon [Tue, 29 Nov 2011 11:03:49 +0000 (12:03 +0100)]
Add seedRadius option to clitkRegionGrowing
- Add seedRadius option to clitkRegionGrowing to allow ball of seeds
instead of single pixel seed.
David Sarrut [Thu, 24 Nov 2011 07:14:57 +0000 (08:14 +0100)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Wed, 23 Nov 2011 15:45:22 +0000 (16:45 +0100)]
returned normal function to overlay menu
David Sarrut [Tue, 22 Nov 2011 15:47:33 +0000 (16:47 +0100)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Fri, 18 Nov 2011 16:37:54 +0000 (17:37 +0100)]
itkv4 migration use itk::ThreadIdType
- Add a typedef on unsigned int for itk 3.20 compatibility
- Use itk::ThreadIdType where needed
David Sarrut [Fri, 18 Nov 2011 15:58:40 +0000 (16:58 +0100)]
Cosmetic
David Sarrut [Fri, 18 Nov 2011 15:58:25 +0000 (16:58 +0100)]
Change behavior : resize the image according to their union area (not like input).
David Sarrut [Fri, 18 Nov 2011 15:54:06 +0000 (16:54 +0100)]
Add compute intersection
David Sarrut [Fri, 18 Nov 2011 15:53:21 +0000 (16:53 +0100)]
Add Depth options
David Sarrut [Fri, 18 Nov 2011 15:53:06 +0000 (16:53 +0100)]
Add Depth options
David Sarrut [Fri, 18 Nov 2011 15:52:48 +0000 (16:52 +0100)]
Add Depth option for contours and overlays
David Sarrut [Fri, 18 Nov 2011 15:52:27 +0000 (16:52 +0100)]
Add Depth option
David Sarrut [Fri, 18 Nov 2011 07:16:58 +0000 (08:16 +0100)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Thu, 17 Nov 2011 15:39:00 +0000 (16:39 +0100)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Thu, 17 Nov 2011 15:38:21 +0000 (16:38 +0100)]
Add missing basename call after.
Simon Rit [Thu, 17 Nov 2011 12:06:59 +0000 (13:06 +0100)]
Corrected bug with button All: W/L was read from spin box which
resolution is limited by text
Simon Rit [Thu, 17 Nov 2011 12:02:32 +0000 (13:02 +0100)]
Corrected tab key bugs for one image and reverse order with shift
Vivien Delmon [Thu, 17 Nov 2011 09:52:49 +0000 (10:52 +0100)]
Motion mask without resampling
- Remove resampling if create_midP_masks-2.0.sh is called without
resampling arguments
Romulo Pinho [Wed, 16 Nov 2011 14:47:36 +0000 (15:47 +0100)]
BLUT transform in threaded mode
- Guarantees that the treaded version of the class will be invoked
+ obs: this change has no effect on the current version (of clitkBLUTDIR) yet, it's just for consistenty with similar changes made in clitkResampleImage
Romulo Pinho [Wed, 16 Nov 2011 14:45:50 +0000 (15:45 +0100)]
new VV option: --linkall
- links all images given in the command line