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Creatis software - clitk.git/log
Simon Rit [Mon, 20 Feb 2012 13:09:56 +0000 (14:09 +0100)]
Use real image center as default rotation center
Simon Rit [Mon, 20 Feb 2012 13:08:07 +0000 (14:08 +0100)]
Gui bug fix: x and z val were inverted
Simon Rit [Wed, 15 Feb 2012 16:19:32 +0000 (17:19 +0100)]
Added --help option for vv
Simon Rit [Tue, 14 Feb 2012 18:44:01 +0000 (19:44 +0100)]
Keep displayed angles in [-360,360] instead of [-180,180]
Simon Rit [Tue, 14 Feb 2012 08:30:36 +0000 (09:30 +0100)]
Removed typename outside template which prevents MSVC compilation
Simon Rit [Mon, 13 Feb 2012 17:03:43 +0000 (18:03 +0100)]
ITK v4 compatibility
Simon Rit [Mon, 13 Feb 2012 16:24:01 +0000 (17:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 13 Feb 2012 16:12:28 +0000 (17:12 +0100)]
itk4 compatibility
Romulo Pinho [Mon, 13 Feb 2012 15:25:24 +0000 (16:25 +0100)]
Removed unnecessary includes and dependencies
Simon Rit [Mon, 13 Feb 2012 13:28:08 +0000 (14:28 +0100)]
Put back and refactored manual rigid registration
Simon Rit [Mon, 13 Feb 2012 13:26:03 +0000 (14:26 +0100)]
Change font of matrix to typewriter type
Simon Rit [Mon, 13 Feb 2012 13:25:39 +0000 (14:25 +0100)]
Really hide input selector
Romulo Pinho [Fri, 10 Feb 2012 09:54:07 +0000 (10:54 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
common/clitkCoeffsToDVF.h
tools/clitkCoeffsToDVF.cxx
Romulo Pinho [Thu, 9 Feb 2012 16:55:24 +0000 (17:55 +0100)]
This is a combination of 3 commits.
new filter to convert from BLUT coeffs to DVF
- refactoring of clitkConvertBSplineDeformableTransformToVFGenericFilter
corrections in last commit
removal of redundant coeffs to dvf tool
- updates in original coeffs to dvf tool
+ new clitk class/filter
- related toos use the new clitk filter
Vivien Delmon [Thu, 9 Feb 2012 14:12:54 +0000 (15:12 +0100)]
BUG wrong tool name added to TOOLS_INSTALL
- clitkAffineTransform and clitkImageMoment were not added to
TOOLS_INSTALL. clitkDicom2Image was added multiple time instead.
Simon Rit [Wed, 8 Feb 2012 18:52:16 +0000 (19:52 +0100)]
Modified the string output of 4x4 matrix, now public for use in other
parts of the code
Simon Rit [Wed, 8 Feb 2012 18:45:04 +0000 (19:45 +0100)]
Remove warning for rtplan 2 gate tool
Gauthier Bouilhol [Wed, 8 Feb 2012 14:05:15 +0000 (15:05 +0100)]
small WRAP_GGO issue fixed
Gauthier Bouilhol [Wed, 8 Feb 2012 13:59:50 +0000 (14:59 +0100)]
clitkDicomRTPlan2Gate tool added
Romulo Pinho [Mon, 6 Feb 2012 14:13:30 +0000 (15:13 +0100)]
Convert coeffs to VF with itk bspline
- conversion with BLUT has bugs (grid appears in VF's jacobian with anisotropic spacing)
- disabled 4D convertion (spatio temporal)
- conversion with BLUT still possible (type = 1, not default)
- input coefficient image is always in BLUT style
- input is converted to is converted to ITK style (one image per component) if type = 0
Simon Rit [Sun, 5 Feb 2012 09:53:13 +0000 (10:53 +0100)]
Fixed cmake version problem
Simon Rit [Sat, 4 Feb 2012 11:29:05 +0000 (12:29 +0100)]
Missing typenames, MSVC is less strict than gcc on that
Simon Rit [Sat, 4 Feb 2012 10:42:07 +0000 (11:42 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 3 Feb 2012 17:30:06 +0000 (18:30 +0100)]
Fixed MSVC issues
Simon Rit [Fri, 3 Feb 2012 17:14:34 +0000 (18:14 +0100)]
Fixed issue when the package is called from another directory
Vivien Delmon [Fri, 3 Feb 2012 12:22:57 +0000 (13:22 +0100)]
Correct bug when opening non 3D vector field
- vvImageReader was opening vector field of nD vectors with the itk 3D
reader. Now we open the vector field with the appropriate itk reader
and then convert it to 3D vectors which are the only one supported by
vv.
David Sarrut [Fri, 3 Feb 2012 07:24:18 +0000 (08:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 3 Feb 2012 07:18:30 +0000 (08:18 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:17:46 +0000 (08:17 +0100)]
remove tools (now in tests_dav)
David Sarrut [Fri, 3 Feb 2012 07:13:46 +0000 (08:13 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:11:34 +0000 (08:11 +0100)]
remove clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:10:40 +0000 (08:10 +0100)]
add clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:06:43 +0000 (08:06 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:57:11 +0000 (07:57 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:53:55 +0000 (07:53 +0100)]
Moved from repository clitk to clitk.private/deprecated
David Sarrut [Fri, 3 Feb 2012 06:52:24 +0000 (07:52 +0100)]
correct fuzzyMapOnlyFlag
Simon Rit [Thu, 2 Feb 2012 17:05:17 +0000 (18:05 +0100)]
Previous warning fix introduced a bug. Fixed
David Sarrut [Thu, 2 Feb 2012 16:06:04 +0000 (17:06 +0100)]
remove tools (now in tests_dav)
David Sarrut [Thu, 2 Feb 2012 16:03:43 +0000 (17:03 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 16:01:20 +0000 (17:01 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:44:55 +0000 (15:44 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:29:44 +0000 (15:29 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 08:39:08 +0000 (09:39 +0100)]
Add ROI tab
David Sarrut [Thu, 2 Feb 2012 08:38:45 +0000 (09:38 +0100)]
First version of new ROI tool (the goal is to put it into the main tab and allow dcm-rt-struct to be loaded)
David Sarrut [Wed, 1 Feb 2012 06:20:06 +0000 (07:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 31 Jan 2012 19:08:06 +0000 (20:08 +0100)]
Update CMakeLists after moving tools to deprecated
Simon Rit [Tue, 31 Jan 2012 18:50:43 +0000 (19:50 +0100)]
Moved from repository clitk to clitk.private/deprecated
Simon Rit [Mon, 30 Jan 2012 13:32:05 +0000 (14:32 +0100)]
Stop rebuilding vv.o everytime cmake is executed. Only do it when
vv/CMakeLists.txt is newer than vvToolsList.h
Romulo Pinho [Fri, 27 Jan 2012 15:31:09 +0000 (16:31 +0100)]
fusion and image colormaps are now equivalent
- changed value range to (1, 1)
Romulo Pinho [Fri, 27 Jan 2012 15:09:49 +0000 (16:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 27 Jan 2012 15:09:09 +0000 (16:09 +0100)]
corrected bug in fusion opacity with double values
Romulo Pinho [Fri, 27 Jan 2012 15:05:06 +0000 (16:05 +0100)]
corrected bug in fusion with double values
Romulo Pinho [Thu, 26 Jan 2012 14:35:00 +0000 (15:35 +0100)]
bug in mhd 4D creation
Romulo Pinho [Thu, 26 Jan 2012 13:06:44 +0000 (14:06 +0100)]
ComposeVF with type 0 as default
Romulo Pinho [Thu, 26 Jan 2012 13:05:51 +0000 (14:05 +0100)]
correction in ComposeVF options
Romulo Pinho [Thu, 26 Jan 2012 12:46:11 +0000 (13:46 +0100)]
accepts suffix for 4D mhd creation
Romulo Pinho [Wed, 25 Jan 2012 14:47:22 +0000 (15:47 +0100)]
changes in CoeffsToDVF interface
- affected tools...
Romulo Pinho [Wed, 25 Jan 2012 14:46:23 +0000 (15:46 +0100)]
new tool: clitkCoeffsToDVF
- converts a BLUT-coefficient image to a DVF
Romulo Pinho [Tue, 24 Jan 2012 13:50:43 +0000 (14:50 +0100)]
more robust clitkExtractLung
- quits with exception when no seed is found for trachea
Romulo Pinho [Thu, 19 Jan 2012 16:51:00 +0000 (17:51 +0100)]
refactoring...
- Put coeff to dvf function in separate file, as a global function
- Changed affected files/classes
Romulo Pinho [Thu, 19 Jan 2012 16:39:42 +0000 (17:39 +0100)]
image warping using B-Spline coefficients
- uses the resolution of the input image for the output
Romulo Pinho [Wed, 18 Jan 2012 17:28:16 +0000 (18:28 +0100)]
Invert VF from B-Spline coefficients
- Interpolate VF first, from coeffs, using --like image
Romulo Pinho [Wed, 18 Jan 2012 16:51:04 +0000 (17:51 +0100)]
VF composition with BSpline coefficients
- output resolution taken from --like image
Romulo Pinho [Tue, 10 Jan 2012 15:36:21 +0000 (16:36 +0100)]
invert Vf on given image grid with resampler
- linear interpolation (itk resampler's default)
- undoes previous version
Romulo Pinho [Tue, 10 Jan 2012 14:18:12 +0000 (15:18 +0100)]
invert VF on given image grid
- with --like option
David Sarrut [Thu, 5 Jan 2012 14:44:12 +0000 (15:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 4 Jan 2012 15:48:10 +0000 (16:48 +0100)]
Adapted crop for vector fields with partial specialization to generate
exceptions for AutoCrop of VF
Simon Rit [Wed, 4 Jan 2012 15:47:51 +0000 (16:47 +0100)]
Provide ADD_DEFAULT_VEC_IMAGE_TYPES for generic VF filters
David Sarrut [Wed, 4 Jan 2012 14:53:54 +0000 (15:53 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 28 Dec 2011 13:27:46 +0000 (14:27 +0100)]
BUG Don't try to change the VF color on cancel.
- Test the validity of the color returned by the QColorDialog before
changing the VF color.
Vivien Delmon [Tue, 27 Dec 2011 14:49:12 +0000 (15:49 +0100)]
Add Overlay properties to SaveState / ReadState
- Use vvSlicerManagers to Get/Set Overlay properties.
Vivien Delmon [Tue, 27 Dec 2011 14:35:44 +0000 (15:35 +0100)]
Add Fusion properties to SaveState / ReadState
- Add constness on QTreeWidgetItem.
- Use vvSlicerManagers to Get/Set Fusion properties.
Vivien Delmon [Tue, 27 Dec 2011 14:30:50 +0000 (15:30 +0100)]
Add constness some getters
Vivien Delmon [Tue, 27 Dec 2011 12:42:20 +0000 (13:42 +0100)]
Remove tmp files
- Remove tmp files after executing the script
- use mktemp instead of /tmp/$RANDOM
Romulo Pinho [Thu, 22 Dec 2011 16:50:48 +0000 (17:50 +0100)]
midpP: combine VF's after inverting and composing
Romulo Pinho [Thu, 22 Dec 2011 13:38:34 +0000 (14:38 +0100)]
use of coefficient images in mid-P creation
Romulo Pinho [Tue, 20 Dec 2011 17:24:36 +0000 (18:24 +0100)]
--focal_origin works again
Romulo Pinho [Tue, 20 Dec 2011 17:24:01 +0000 (18:24 +0100)]
Possibility to add a VTK image to vvImage
David Sarrut [Tue, 20 Dec 2011 06:44:55 +0000 (07:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 19 Dec 2011 13:22:17 +0000 (14:22 +0100)]
more robust motion mask script
Romulo Pinho [Fri, 16 Dec 2011 10:55:00 +0000 (11:55 +0100)]
dicom structure in cmd line
- --contour <FILE>
- in the same way as overlay/fusion/vf
Romulo Pinho [Thu, 15 Dec 2011 17:43:42 +0000 (18:43 +0100)]
motion masks with and without bands
David Sarrut [Thu, 15 Dec 2011 06:25:38 +0000 (07:25 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 14 Dec 2011 13:18:40 +0000 (14:18 +0100)]
Adapt CMakeLists to include it from other projects
Simon Rit [Wed, 14 Dec 2011 12:50:13 +0000 (13:50 +0100)]
Remove useless common.cmake inclusions
Vivien Delmon [Wed, 14 Dec 2011 09:07:24 +0000 (10:07 +0100)]
Add VTK_LIBRARIES variable for vtk < 5.8.0
Add VTK_LIBRARIES variable for vtk < 5.8.0 and use it.
Romulo Pinho [Tue, 13 Dec 2011 16:38:53 +0000 (17:38 +0100)]
midp masks use new clitkExtractLung version
Romulo Pinho [Tue, 13 Dec 2011 16:34:27 +0000 (17:34 +0100)]
new 4D files as output of midp script
David Sarrut [Tue, 13 Dec 2011 14:29:41 +0000 (15:29 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 13 Dec 2011 13:06:19 +0000 (14:06 +0100)]
Factorize CMakeLists
- Factorize CMakeLists to allow their use in other projects.
Romulo Pinho [Tue, 13 Dec 2011 09:49:47 +0000 (10:49 +0100)]
itkv4 migration
Romulo Pinho [Tue, 13 Dec 2011 09:35:10 +0000 (10:35 +0100)]
ExtractLung - Small corrections in verbose mode
David Sarrut [Tue, 13 Dec 2011 06:38:28 +0000 (07:38 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 12 Dec 2011 17:07:26 +0000 (18:07 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 12 Dec 2011 17:07:11 +0000 (18:07 +0100)]
Revert "itkv4 migration use itk::ThreadIdType"
This reverts commit
a6957c4825e83c61b977ec316dd841878617ffbd .
David Sarrut [Mon, 12 Dec 2011 15:19:00 +0000 (16:19 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 12 Dec 2011 14:31:49 +0000 (15:31 +0100)]
Trachea finding algorithm
- version used in LOLA11
- preserved original version
- new "type" parameter to choose between algorithms
- algorithm-specific params
Romulo Pinho [Mon, 12 Dec 2011 12:33:21 +0000 (13:33 +0100)]
working version of new trachea finding algo
- the one used in LOLA11
Gauthier Bouilhol [Mon, 12 Dec 2011 10:56:50 +0000 (11:56 +0100)]
Optional options corrected
Vivien Delmon [Thu, 8 Dec 2011 13:20:35 +0000 (14:20 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk