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Creatis software - clitk.git/log
Simon Rit [Fri, 13 Sep 2013 19:36:01 +0000 (21:36 +0200)]
Improved Elastix conversion
Simon Rit [Wed, 4 Sep 2013 12:31:41 +0000 (14:31 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 21 Aug 2013 09:54:40 +0000 (11:54 +0200)]
Use IsNormal instead of std::isnormal (C++11)
std::isnormal is a C++11 function not available in VS 2012
use IsNormal defined in clitkPortability instead
Vivien Delmon [Wed, 21 Aug 2013 09:32:52 +0000 (11:32 +0200)]
Revert "Remove C++11 call to isnormal"
This reverts commit
a845c6a04ecfeedc8eced5f4051e06ee88c59e90.
Vivien Delmon [Wed, 21 Aug 2013 09:18:27 +0000 (11:18 +0200)]
Remove C++11 call to isnormal
- std::isnormal is not available under windows VS12. Implement it using
numeric_limits functions
agata [Wed, 14 Aug 2013 19:11:15 +0000 (21:11 +0200)]
Remove build clitk options in superbuild, add gdcm 2.2.4.
David Sarrut [Mon, 29 Jul 2013 06:07:03 +0000 (08:07 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 29 Jul 2013 06:05:47 +0000 (08:05 +0200)]
Remove warning on mac (vtk)
Agata Krason [Fri, 26 Jul 2013 15:35:46 +0000 (17:35 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Agata Krason [Fri, 26 Jul 2013 15:33:06 +0000 (17:33 +0200)]
Superbuild : Change version gdcm - 2.2.4, itk 4.4.0 and add make install to VV.
David Sarrut [Fri, 26 Jul 2013 13:39:53 +0000 (15:39 +0200)]
Add cluster_tool scripts in install
David Sarrut [Fri, 26 Jul 2013 13:12:27 +0000 (15:12 +0200)]
First version of gate_make_merge_release (for gatelab)
David Sarrut [Fri, 26 Jul 2013 13:05:15 +0000 (15:05 +0200)]
Add clitkImageUncertainty (for gate dose uncertainty)
David Sarrut [Fri, 26 Jul 2013 13:01:41 +0000 (15:01 +0200)]
Moved from repository clitk.private to tools
gueth [Thu, 3 Mar 2011 15:03:30 +0000 (15:03 +0000)]
uncertainty=100% when no dose in voxel (as in Gate)
schaerer [Thu, 28 Oct 2010 12:42:11 +0000 (12:42 +0000)]
compatibility with the newest gengetopt
dsarrut [Tue, 9 Mar 2010 15:45:11 +0000 (15:45 +0000)]
- make compatible with new signal folder - add common.cmake (to generate ggo files)
schaerer [Tue, 19 Jan 2010 16:02:52 +0000 (16:02 +0000)]
tests_dav
David Sarrut [Fri, 26 Jul 2013 12:57:35 +0000 (14:57 +0200)]
Add computation of statistical uncertainty
David Sarrut [Fri, 26 Jul 2013 06:58:16 +0000 (08:58 +0200)]
indent
David Sarrut [Fri, 26 Jul 2013 06:52:03 +0000 (08:52 +0200)]
Add tool_install for clitkMergeRootFiles & clitkMergeAsciiDoseActor
David Sarrut [Fri, 26 Jul 2013 06:47:54 +0000 (08:47 +0200)]
Add clitkMergeRootFiles
David Sarrut [Fri, 26 Jul 2013 06:44:39 +0000 (08:44 +0200)]
Moved from repository clitk.private to tools
Pierre Gueth [Thu, 7 Feb 2013 14:35:00 +0000 (15:35 +0100)]
merger works when files are ordered
Pierre Gueth [Thu, 7 Feb 2013 14:01:20 +0000 (15:01 +0100)]
switched to gjm merger for pet
Pierre Gueth [Thu, 7 Feb 2013 13:37:24 +0000 (14:37 +0100)]
copied gatemergemanager from gate-creatis
David Sarrut [Fri, 26 Jul 2013 06:43:32 +0000 (08:43 +0200)]
mv file
David Sarrut [Fri, 26 Jul 2013 06:43:19 +0000 (08:43 +0200)]
remove files
David Sarrut [Fri, 26 Jul 2013 06:33:53 +0000 (08:33 +0200)]
Moved from repository clitk.private to tools
Pierre Gueth [Thu, 7 Feb 2013 15:03:32 +0000 (16:03 +0100)]
pet merger seams to work
Pierre Gueth [Thu, 7 Feb 2013 14:35:00 +0000 (15:35 +0100)]
merger works when files are ordered
Pierre Gueth [Thu, 7 Feb 2013 14:01:20 +0000 (15:01 +0100)]
switched to gjm merger for pet
Pierre Gueth [Thu, 7 Feb 2013 13:17:09 +0000 (14:17 +0100)]
more root merger
Pierre Gueth [Mon, 4 Feb 2013 12:18:11 +0000 (13:18 +0100)]
variable name set
Pierre Gueth [Fri, 1 Feb 2013 15:39:35 +0000 (16:39 +0100)]
pet output detection
Pierre Gueth [Fri, 1 Feb 2013 15:31:19 +0000 (16:31 +0100)]
fixed clitkMergeRootFiles build
gueth [Fri, 20 May 2011 14:44:49 +0000 (14:44 +0000)]
TVirtualPlugin fix for non x system
dsarrut [Tue, 30 Mar 2010 14:04:01 +0000 (14:04 +0000)]
- merger for gate
David Sarrut [Fri, 26 Jul 2013 06:24:56 +0000 (08:24 +0200)]
Add clitkMergeAsciiDoseActor
David Sarrut [Fri, 26 Jul 2013 06:20:58 +0000 (08:20 +0200)]
Moved from repository clitk.private to tools
dsarrut [Tue, 30 Mar 2010 14:04:01 +0000 (14:04 +0000)]
- merger for gate
David Sarrut [Fri, 26 Jul 2013 06:18:16 +0000 (08:18 +0200)]
Fix compile issue (add include <iterator>)
David Sarrut [Fri, 26 Jul 2013 05:56:17 +0000 (07:56 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 25 Jul 2013 15:31:03 +0000 (17:31 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 25 Jul 2013 12:04:17 +0000 (14:04 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Agata Krason [Thu, 25 Jul 2013 11:02:17 +0000 (13:02 +0200)]
Add to superbuild gdcm and option clitk registration, segmentation and tools.
David Sarrut [Thu, 25 Jul 2013 09:32:39 +0000 (11:32 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 25 Jul 2013 08:51:23 +0000 (10:51 +0200)]
Tool to inverse a matrix
Simon Rit [Thu, 25 Jul 2013 08:50:04 +0000 (10:50 +0200)]
Move matrix to string conversion to common library
Agata Krason [Thu, 25 Jul 2013 07:25:20 +0000 (09:25 +0200)]
Add to VV superbuild gdcm option.
Simon Rit [Wed, 24 Jul 2013 22:06:59 +0000 (00:06 +0200)]
Allow reading .elx file for rigid transformations, i.e. the result of
Elastix' registration.
Simon Rit [Wed, 24 Jul 2013 22:04:34 +0000 (00:04 +0200)]
Used euler3DTransform instead of CenteredEulerTransform. Similar result
but more consistent with Elastix.
David Sarrut [Wed, 24 Jul 2013 15:05:51 +0000 (17:05 +0200)]
Add define to avoir vtk warning on mac
David Sarrut [Wed, 24 Jul 2013 15:05:26 +0000 (17:05 +0200)]
Add define to avoid vtk warning on mac
Simon Rit [Wed, 24 Jul 2013 15:04:09 +0000 (17:04 +0200)]
Go from matrix to elastix file
Simon Rit [Wed, 24 Jul 2013 11:29:54 +0000 (13:29 +0200)]
When resampling, keeping the same origin seems wrong because the origin
is not the corner of the image but the center of the first pixel
Simon Rit [Wed, 24 Jul 2013 11:26:03 +0000 (13:26 +0200)]
Moved Elastix stuff to a separate file
Simon Rit [Mon, 22 Jul 2013 15:22:44 +0000 (17:22 +0200)]
Support for mha
David Sarrut [Mon, 22 Jul 2013 13:04:10 +0000 (15:04 +0200)]
Add clitkDice tool
David Sarrut [Mon, 22 Jul 2013 13:01:46 +0000 (15:01 +0200)]
Set clitkDice tool into public repo
David Sarrut [Mon, 22 Jul 2013 12:57:05 +0000 (14:57 +0200)]
Updated dice tool
David Sarrut [Thu, 24 Jan 2013 06:53:55 +0000 (07:53 +0100)]
Compatibility
David Sarrut [Fri, 3 Feb 2012 07:13:51 +0000 (08:13 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Mon, 22 Jul 2013 12:56:33 +0000 (14:56 +0200)]
Updated version with new itk filter
David Sarrut [Mon, 22 Jul 2013 12:10:26 +0000 (14:10 +0200)]
Remove itk filter which is now inside itk
David Sarrut [Fri, 19 Jul 2013 07:54:06 +0000 (09:54 +0200)]
Add missing clitkElastixTransformToMatrix
David Sarrut [Fri, 19 Jul 2013 07:53:55 +0000 (09:53 +0200)]
Add missing clitkElastixTransformToMatrix
David Sarrut [Thu, 18 Jul 2013 09:15:11 +0000 (11:15 +0200)]
First version to submit jobs on a single multithread machine (if no qsub command exist)
David Sarrut [Thu, 18 Jul 2013 08:52:25 +0000 (10:52 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 18 Jul 2013 06:39:27 +0000 (08:39 +0200)]
Change the default fgate name to gate
David Sarrut [Wed, 17 Jul 2013 14:44:37 +0000 (16:44 +0200)]
Add needed merger for stat file (python)
Marc Vila-Oliva [Thu, 11 Jul 2013 13:01:22 +0000 (15:01 +0200)]
set bc scale by default to 30 decimals in mergeDosePerEnergy
dsarrut [Mon, 8 Jul 2013 09:15:40 +0000 (11:15 +0200)]
Update README.md
dsarrut [Mon, 8 Jul 2013 09:14:54 +0000 (11:14 +0200)]
Create README.md
David Sarrut [Mon, 8 Jul 2013 09:01:00 +0000 (11:01 +0200)]
Add tool to convert Elastix param into matrix file
Simon Rit [Fri, 5 Jul 2013 07:18:39 +0000 (09:18 +0200)]
Rolled back to Pierre's version of stat merger
Pierre Gueth [Thu, 24 Jan 2013 13:09:59 +0000 (14:09 +0100)]
merge details
Pierre Gueth [Wed, 1 Jun 2011 13:48:43 +0000 (15:48 +0200)]
added hdr image to power_merge
Pierre Gueth [Fri, 20 May 2011 13:53:38 +0000 (15:53 +0200)]
merging
Marc Vila-Oliva [Thu, 4 Jul 2013 17:38:57 +0000 (19:38 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Marc Vila-Oliva [Thu, 4 Jul 2013 17:06:58 +0000 (19:06 +0200)]
new script for merging dose per energy files
Marc Vila-Oliva [Thu, 4 Jul 2013 17:05:45 +0000 (19:05 +0200)]
added DosePerEnergy merger and modified filename for mergeStats
Simon Rit [Thu, 4 Jul 2013 16:36:54 +0000 (18:36 +0200)]
Made .mat reading robust to non matrix files (e.g., Gate material files)
Simon Rit [Tue, 2 Jul 2013 21:21:56 +0000 (23:21 +0200)]
Corrected cluster job to move current output before deleting the rest of
the macro files
David Sarrut [Mon, 1 Jul 2013 10:00:00 +0000 (12:00 +0200)]
Seeds are now given in mm (not in pixels ; bug)
David Sarrut [Mon, 1 Jul 2013 07:00:35 +0000 (09:00 +0200)]
Add option to display series and filename
David Sarrut [Fri, 28 Jun 2013 08:28:31 +0000 (10:28 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 27 Jun 2013 14:31:05 +0000 (16:31 +0200)]
Added trap as suggested by Fabrice
Simon Rit [Thu, 27 Jun 2013 14:30:42 +0000 (16:30 +0200)]
Force 1 thread only
Simon Rit [Thu, 27 Jun 2013 14:25:25 +0000 (16:25 +0200)]
Modified to use .bashrc settings as default
Pierre Gueth [Fri, 20 May 2011 12:55:56 +0000 (14:55 +0200)]
merging
pierre gueth [Mon, 7 Mar 2011 10:40:13 +0000 (11:40 +0100)]
stat file unittest
pgueth [Mon, 7 Mar 2011 10:19:39 +0000 (11:19 +0100)]
merge release script
Simon Rit [Thu, 27 Jun 2013 13:02:48 +0000 (15:02 +0200)]
Fix job file name after moving files from Pierre's repository
Pierre Gueth [Mon, 30 Jan 2012 15:06:15 +0000 (16:06 +0100)]
bugfix in cluster jobs and submission script
Pierre Gueth [Thu, 24 Jan 2013 13:09:59 +0000 (14:09 +0100)]
merge details
Pierre Gueth [Wed, 5 Dec 2012 14:30:08 +0000 (15:30 +0100)]
root merge warning to error
pierre gueth [Thu, 6 Sep 2012 13:05:58 +0000 (15:05 +0200)]
gate_power_merge support interfile sinogramme
Pierre Gueth [Tue, 10 Jul 2012 14:18:41 +0000 (16:18 +0200)]
just cp when all txt files are identical
Pierre Gueth [Wed, 4 Jul 2012 16:21:46 +0000 (18:21 +0200)]
bugfix merge
git://git.creatis.insa-lyon.fr / clitk.git / log