]>
Creatis software - clitk.git/log
Simon Rit [Thu, 25 Jul 2013 15:31:03 +0000 (17:31 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Agata Krason [Thu, 25 Jul 2013 11:02:17 +0000 (13:02 +0200)]
Add to superbuild gdcm and option clitk registration, segmentation and tools.
Simon Rit [Thu, 25 Jul 2013 08:51:23 +0000 (10:51 +0200)]
Tool to inverse a matrix
Simon Rit [Thu, 25 Jul 2013 08:50:04 +0000 (10:50 +0200)]
Move matrix to string conversion to common library
Agata Krason [Thu, 25 Jul 2013 07:25:20 +0000 (09:25 +0200)]
Add to VV superbuild gdcm option.
Simon Rit [Wed, 24 Jul 2013 22:06:59 +0000 (00:06 +0200)]
Allow reading .elx file for rigid transformations, i.e. the result of
Elastix' registration.
Simon Rit [Wed, 24 Jul 2013 22:04:34 +0000 (00:04 +0200)]
Used euler3DTransform instead of CenteredEulerTransform. Similar result
but more consistent with Elastix.
Simon Rit [Wed, 24 Jul 2013 15:04:09 +0000 (17:04 +0200)]
Go from matrix to elastix file
Simon Rit [Wed, 24 Jul 2013 11:29:54 +0000 (13:29 +0200)]
When resampling, keeping the same origin seems wrong because the origin
is not the corner of the image but the center of the first pixel
Simon Rit [Wed, 24 Jul 2013 11:26:03 +0000 (13:26 +0200)]
Moved Elastix stuff to a separate file
David Sarrut [Fri, 19 Jul 2013 07:54:06 +0000 (09:54 +0200)]
Add missing clitkElastixTransformToMatrix
David Sarrut [Fri, 19 Jul 2013 07:53:55 +0000 (09:53 +0200)]
Add missing clitkElastixTransformToMatrix
David Sarrut [Thu, 18 Jul 2013 09:15:11 +0000 (11:15 +0200)]
First version to submit jobs on a single multithread machine (if no qsub command exist)
David Sarrut [Thu, 18 Jul 2013 08:52:25 +0000 (10:52 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 18 Jul 2013 06:39:27 +0000 (08:39 +0200)]
Change the default fgate name to gate
David Sarrut [Wed, 17 Jul 2013 14:44:37 +0000 (16:44 +0200)]
Add needed merger for stat file (python)
Marc Vila-Oliva [Thu, 11 Jul 2013 13:01:22 +0000 (15:01 +0200)]
set bc scale by default to 30 decimals in mergeDosePerEnergy
dsarrut [Mon, 8 Jul 2013 09:15:40 +0000 (11:15 +0200)]
Update README.md
dsarrut [Mon, 8 Jul 2013 09:14:54 +0000 (11:14 +0200)]
Create README.md
David Sarrut [Mon, 8 Jul 2013 09:01:00 +0000 (11:01 +0200)]
Add tool to convert Elastix param into matrix file
Simon Rit [Fri, 5 Jul 2013 07:18:39 +0000 (09:18 +0200)]
Rolled back to Pierre's version of stat merger
Pierre Gueth [Thu, 24 Jan 2013 13:09:59 +0000 (14:09 +0100)]
merge details
Pierre Gueth [Wed, 1 Jun 2011 13:48:43 +0000 (15:48 +0200)]
added hdr image to power_merge
Pierre Gueth [Fri, 20 May 2011 13:53:38 +0000 (15:53 +0200)]
merging
Marc Vila-Oliva [Thu, 4 Jul 2013 17:38:57 +0000 (19:38 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Marc Vila-Oliva [Thu, 4 Jul 2013 17:06:58 +0000 (19:06 +0200)]
new script for merging dose per energy files
Marc Vila-Oliva [Thu, 4 Jul 2013 17:05:45 +0000 (19:05 +0200)]
added DosePerEnergy merger and modified filename for mergeStats
Simon Rit [Thu, 4 Jul 2013 16:36:54 +0000 (18:36 +0200)]
Made .mat reading robust to non matrix files (e.g., Gate material files)
Simon Rit [Tue, 2 Jul 2013 21:21:56 +0000 (23:21 +0200)]
Corrected cluster job to move current output before deleting the rest of
the macro files
David Sarrut [Mon, 1 Jul 2013 10:00:00 +0000 (12:00 +0200)]
Seeds are now given in mm (not in pixels ; bug)
David Sarrut [Mon, 1 Jul 2013 07:00:35 +0000 (09:00 +0200)]
Add option to display series and filename
David Sarrut [Fri, 28 Jun 2013 08:28:31 +0000 (10:28 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 27 Jun 2013 14:31:05 +0000 (16:31 +0200)]
Added trap as suggested by Fabrice
Simon Rit [Thu, 27 Jun 2013 14:30:42 +0000 (16:30 +0200)]
Force 1 thread only
Simon Rit [Thu, 27 Jun 2013 14:25:25 +0000 (16:25 +0200)]
Modified to use .bashrc settings as default
Pierre Gueth [Fri, 20 May 2011 12:55:56 +0000 (14:55 +0200)]
merging
pierre gueth [Mon, 7 Mar 2011 10:40:13 +0000 (11:40 +0100)]
stat file unittest
pgueth [Mon, 7 Mar 2011 10:19:39 +0000 (11:19 +0100)]
merge release script
Simon Rit [Thu, 27 Jun 2013 13:02:48 +0000 (15:02 +0200)]
Fix job file name after moving files from Pierre's repository
Pierre Gueth [Mon, 30 Jan 2012 15:06:15 +0000 (16:06 +0100)]
bugfix in cluster jobs and submission script
Pierre Gueth [Thu, 24 Jan 2013 13:09:59 +0000 (14:09 +0100)]
merge details
Pierre Gueth [Wed, 5 Dec 2012 14:30:08 +0000 (15:30 +0100)]
root merge warning to error
pierre gueth [Thu, 6 Sep 2012 13:05:58 +0000 (15:05 +0200)]
gate_power_merge support interfile sinogramme
Pierre Gueth [Tue, 10 Jul 2012 14:18:41 +0000 (16:18 +0200)]
just cp when all txt files are identical
Pierre Gueth [Wed, 4 Jul 2012 16:21:46 +0000 (18:21 +0200)]
bugfix merge
Pierre Gueth [Wed, 4 Jul 2012 15:29:55 +0000 (17:29 +0200)]
bugfix in gate_power_merge.sh
Pierre Gueth [Fri, 29 Jun 2012 14:24:07 +0000 (16:24 +0200)]
gate_power_merge sould support mhd now!!
Pierre Gueth [Wed, 20 Jun 2012 14:50:07 +0000 (16:50 +0200)]
bugfix
Pierre Gueth (kingkong) [Wed, 28 Mar 2012 11:39:44 +0000 (13:39 +0200)]
new power merge with unkown txt output support
Pierre Gueth (kingkong) [Wed, 28 Mar 2012 11:23:30 +0000 (13:23 +0200)]
latest version
Pierre Gueth [Thu, 15 Sep 2011 08:41:49 +0000 (10:41 +0200)]
save params in merged dir and merge detection script
pierre gueth [Fri, 24 Jun 2011 11:03:54 +0000 (13:03 +0200)]
indent
pierre gueth [Fri, 24 Jun 2011 09:46:13 +0000 (11:46 +0200)]
return if any merge call fail
Pierre Gueth [Fri, 24 Jun 2011 09:10:45 +0000 (11:10 +0200)]
refactor
Pierre Gueth [Mon, 20 Jun 2011 11:09:36 +0000 (13:09 +0200)]
nice print and verbose
Pierre Gueth (kingkong) [Fri, 10 Jun 2011 14:36:49 +0000 (16:36 +0200)]
less verbose
Pierre Gueth (kingkong) [Fri, 10 Jun 2011 13:33:13 +0000 (15:33 +0200)]
more verbose merge and more robust merge_make_release.sh
Pierre Gueth (kingkong) [Fri, 10 Jun 2011 09:56:56 +0000 (11:56 +0200)]
power merge merger selection
Pierre Gueth (kingkong) [Fri, 10 Jun 2011 09:19:00 +0000 (11:19 +0200)]
renamed
pierre gueth [Fri, 9 Mar 2012 17:15:10 +0000 (18:15 +0100)]
new version
pierre gueth [Wed, 29 Feb 2012 15:12:43 +0000 (16:12 +0100)]
new release 07a
Pierre Gueth [Tue, 28 Feb 2012 13:34:42 +0000 (14:34 +0100)]
upgraded release
Pierre Gueth [Tue, 31 Jan 2012 14:58:15 +0000 (15:58 +0100)]
perturbation amplitude and params file on cluster
Pierre Gueth [Mon, 30 Jan 2012 15:06:15 +0000 (16:06 +0100)]
bugfix in cluster jobs and submission script
Pierre Gueth [Wed, 1 Jun 2011 11:34:59 +0000 (13:34 +0200)]
works on cc!!!
David Sarrut [Wed, 26 Jun 2013 14:47:26 +0000 (16:47 +0200)]
Remove comment
David Sarrut [Wed, 26 Jun 2013 14:46:51 +0000 (16:46 +0200)]
Allow to convert/write uint image (dose from eclipse)
David Sarrut [Thu, 20 Jun 2013 15:06:05 +0000 (17:06 +0200)]
Rename common to gate_common
David Sarrut [Thu, 20 Jun 2013 11:16:24 +0000 (13:16 +0200)]
Add common.sh (pierre)
Pierre Gueth [Wed, 26 Sep 2012 08:26:17 +0000 (10:26 +0200)]
updated common.dh for release relplicaion
Pierre Gueth (kingkong) [Wed, 8 Jun 2011 14:48:52 +0000 (16:48 +0200)]
new release dir
Pierre Gueth [Mon, 14 Mar 2011 10:04:26 +0000 (11:04 +0100)]
more strict
pierre gueth [Fri, 11 Mar 2011 13:07:24 +0000 (14:07 +0100)]
more grid script
pgueth [Mon, 7 Mar 2011 10:54:48 +0000 (11:54 +0100)]
bugfix
pgueth [Fri, 4 Mar 2011 14:30:20 +0000 (15:30 +0100)]
upload_workflow script works
pgueth [Fri, 4 Mar 2011 14:06:50 +0000 (15:06 +0100)]
wrote upload function
pgueth [Fri, 4 Mar 2011 11:51:34 +0000 (12:51 +0100)]
check if file already exists
pierre gueth [Fri, 4 Mar 2011 10:37:16 +0000 (11:37 +0100)]
started upload script
David Sarrut [Thu, 20 Jun 2013 11:07:00 +0000 (13:07 +0200)]
rename file
David Sarrut [Thu, 20 Jun 2013 10:59:09 +0000 (12:59 +0200)]
indent
David Sarrut [Thu, 20 Jun 2013 10:58:58 +0000 (12:58 +0200)]
mv upload_release from pierre repo to clitk
pgueth [Fri, 4 Mar 2011 14:06:50 +0000 (15:06 +0100)]
wrote upload function
pgueth [Fri, 4 Mar 2011 11:51:34 +0000 (12:51 +0100)]
check if file already exists
pierre gueth [Fri, 4 Mar 2011 10:37:16 +0000 (11:37 +0100)]
started upload script
pgueth [Fri, 4 Mar 2011 08:40:09 +0000 (09:40 +0100)]
upload release script works
pgueth [Thu, 3 Mar 2011 17:08:46 +0000 (18:08 +0100)]
more grid scripts
David Sarrut [Thu, 20 Jun 2013 10:31:18 +0000 (12:31 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 20 Jun 2013 10:30:31 +0000 (12:30 +0200)]
Temporary comment for roi color
David Sarrut [Thu, 20 Jun 2013 10:30:03 +0000 (12:30 +0200)]
Allow to write only new structures (do not copy older ones)
David Sarrut [Thu, 20 Jun 2013 10:29:30 +0000 (12:29 +0200)]
Change help info
David Sarrut [Thu, 20 Jun 2013 10:28:27 +0000 (12:28 +0200)]
Add gate_make_release for the gatelab (Pierre)
Pierre Gueth (kingkong) [Tue, 5 Jun 2012 13:42:16 +0000 (15:42 +0200)]
new releas
Pierre Gueth (kingkong) [Fri, 24 Jun 2011 09:54:44 +0000 (11:54 +0200)]
moved
Benoît Presles [Fri, 14 Jun 2013 17:01:00 +0000 (19:01 +0200)]
clitkVectorImageToImage bug correction
David Sarrut [Thu, 13 Jun 2013 12:45:45 +0000 (14:45 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 12 Jun 2013 14:56:33 +0000 (16:56 +0200)]
Allow to insert several images/contours at one time
David Sarrut [Wed, 12 Jun 2013 14:55:53 +0000 (16:55 +0200)]
Remove not needed library dep
Simon Rit [Wed, 12 Jun 2013 14:33:34 +0000 (16:33 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 12 Jun 2013 09:36:18 +0000 (11:36 +0200)]
Fix reload bug
David Sarrut [Wed, 12 Jun 2013 09:35:59 +0000 (11:35 +0200)]
Check if it is really a rt-struct dicom before opening it
git://git.creatis.insa-lyon.fr / clitk.git / log