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Creatis software - clitk.git/log
Vivien Delmon [Fri, 3 Feb 2012 12:22:57 +0000 (13:22 +0100)]
Correct bug when opening non 3D vector field
- vvImageReader was opening vector field of nD vectors with the itk 3D
reader. Now we open the vector field with the appropriate itk reader
and then convert it to 3D vectors which are the only one supported by
vv.
David Sarrut [Fri, 3 Feb 2012 07:24:18 +0000 (08:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 3 Feb 2012 07:18:30 +0000 (08:18 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:17:46 +0000 (08:17 +0100)]
remove tools (now in tests_dav)
David Sarrut [Fri, 3 Feb 2012 07:13:46 +0000 (08:13 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:11:34 +0000 (08:11 +0100)]
remove clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:10:40 +0000 (08:10 +0100)]
add clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:06:43 +0000 (08:06 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:57:11 +0000 (07:57 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:53:55 +0000 (07:53 +0100)]
Moved from repository clitk to clitk.private/deprecated
David Sarrut [Fri, 3 Feb 2012 06:52:24 +0000 (07:52 +0100)]
correct fuzzyMapOnlyFlag
Simon Rit [Thu, 2 Feb 2012 17:05:17 +0000 (18:05 +0100)]
Previous warning fix introduced a bug. Fixed
David Sarrut [Thu, 2 Feb 2012 16:06:04 +0000 (17:06 +0100)]
remove tools (now in tests_dav)
David Sarrut [Thu, 2 Feb 2012 16:03:43 +0000 (17:03 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 16:01:20 +0000 (17:01 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:44:55 +0000 (15:44 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:29:44 +0000 (15:29 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 08:39:08 +0000 (09:39 +0100)]
Add ROI tab
David Sarrut [Thu, 2 Feb 2012 08:38:45 +0000 (09:38 +0100)]
First version of new ROI tool (the goal is to put it into the main tab and allow dcm-rt-struct to be loaded)
David Sarrut [Wed, 1 Feb 2012 06:20:06 +0000 (07:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 31 Jan 2012 19:08:06 +0000 (20:08 +0100)]
Update CMakeLists after moving tools to deprecated
Simon Rit [Tue, 31 Jan 2012 18:50:43 +0000 (19:50 +0100)]
Moved from repository clitk to clitk.private/deprecated
Simon Rit [Mon, 30 Jan 2012 13:32:05 +0000 (14:32 +0100)]
Stop rebuilding vv.o everytime cmake is executed. Only do it when
vv/CMakeLists.txt is newer than vvToolsList.h
Romulo Pinho [Fri, 27 Jan 2012 15:31:09 +0000 (16:31 +0100)]
fusion and image colormaps are now equivalent
- changed value range to (1, 1)
Romulo Pinho [Fri, 27 Jan 2012 15:09:49 +0000 (16:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 27 Jan 2012 15:09:09 +0000 (16:09 +0100)]
corrected bug in fusion opacity with double values
Romulo Pinho [Fri, 27 Jan 2012 15:05:06 +0000 (16:05 +0100)]
corrected bug in fusion with double values
Romulo Pinho [Thu, 26 Jan 2012 14:35:00 +0000 (15:35 +0100)]
bug in mhd 4D creation
Romulo Pinho [Thu, 26 Jan 2012 13:06:44 +0000 (14:06 +0100)]
ComposeVF with type 0 as default
Romulo Pinho [Thu, 26 Jan 2012 13:05:51 +0000 (14:05 +0100)]
correction in ComposeVF options
Romulo Pinho [Thu, 26 Jan 2012 12:46:11 +0000 (13:46 +0100)]
accepts suffix for 4D mhd creation
Romulo Pinho [Wed, 25 Jan 2012 14:47:22 +0000 (15:47 +0100)]
changes in CoeffsToDVF interface
- affected tools...
Romulo Pinho [Wed, 25 Jan 2012 14:46:23 +0000 (15:46 +0100)]
new tool: clitkCoeffsToDVF
- converts a BLUT-coefficient image to a DVF
Romulo Pinho [Tue, 24 Jan 2012 13:50:43 +0000 (14:50 +0100)]
more robust clitkExtractLung
- quits with exception when no seed is found for trachea
Romulo Pinho [Thu, 19 Jan 2012 16:51:00 +0000 (17:51 +0100)]
refactoring...
- Put coeff to dvf function in separate file, as a global function
- Changed affected files/classes
Romulo Pinho [Thu, 19 Jan 2012 16:39:42 +0000 (17:39 +0100)]
image warping using B-Spline coefficients
- uses the resolution of the input image for the output
Romulo Pinho [Wed, 18 Jan 2012 17:28:16 +0000 (18:28 +0100)]
Invert VF from B-Spline coefficients
- Interpolate VF first, from coeffs, using --like image
Romulo Pinho [Wed, 18 Jan 2012 16:51:04 +0000 (17:51 +0100)]
VF composition with BSpline coefficients
- output resolution taken from --like image
Romulo Pinho [Tue, 10 Jan 2012 15:36:21 +0000 (16:36 +0100)]
invert Vf on given image grid with resampler
- linear interpolation (itk resampler's default)
- undoes previous version
Romulo Pinho [Tue, 10 Jan 2012 14:18:12 +0000 (15:18 +0100)]
invert VF on given image grid
- with --like option
David Sarrut [Thu, 5 Jan 2012 14:44:12 +0000 (15:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 4 Jan 2012 15:48:10 +0000 (16:48 +0100)]
Adapted crop for vector fields with partial specialization to generate
exceptions for AutoCrop of VF
Simon Rit [Wed, 4 Jan 2012 15:47:51 +0000 (16:47 +0100)]
Provide ADD_DEFAULT_VEC_IMAGE_TYPES for generic VF filters
David Sarrut [Wed, 4 Jan 2012 14:53:54 +0000 (15:53 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 28 Dec 2011 13:27:46 +0000 (14:27 +0100)]
BUG Don't try to change the VF color on cancel.
- Test the validity of the color returned by the QColorDialog before
changing the VF color.
Vivien Delmon [Tue, 27 Dec 2011 14:49:12 +0000 (15:49 +0100)]
Add Overlay properties to SaveState / ReadState
- Use vvSlicerManagers to Get/Set Overlay properties.
Vivien Delmon [Tue, 27 Dec 2011 14:35:44 +0000 (15:35 +0100)]
Add Fusion properties to SaveState / ReadState
- Add constness on QTreeWidgetItem.
- Use vvSlicerManagers to Get/Set Fusion properties.
Vivien Delmon [Tue, 27 Dec 2011 14:30:50 +0000 (15:30 +0100)]
Add constness some getters
Vivien Delmon [Tue, 27 Dec 2011 12:42:20 +0000 (13:42 +0100)]
Remove tmp files
- Remove tmp files after executing the script
- use mktemp instead of /tmp/$RANDOM
Romulo Pinho [Thu, 22 Dec 2011 16:50:48 +0000 (17:50 +0100)]
midpP: combine VF's after inverting and composing
Romulo Pinho [Thu, 22 Dec 2011 13:38:34 +0000 (14:38 +0100)]
use of coefficient images in mid-P creation
Romulo Pinho [Tue, 20 Dec 2011 17:24:36 +0000 (18:24 +0100)]
--focal_origin works again
Romulo Pinho [Tue, 20 Dec 2011 17:24:01 +0000 (18:24 +0100)]
Possibility to add a VTK image to vvImage
David Sarrut [Tue, 20 Dec 2011 06:44:55 +0000 (07:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 19 Dec 2011 13:22:17 +0000 (14:22 +0100)]
more robust motion mask script
Romulo Pinho [Fri, 16 Dec 2011 10:55:00 +0000 (11:55 +0100)]
dicom structure in cmd line
- --contour <FILE>
- in the same way as overlay/fusion/vf
Romulo Pinho [Thu, 15 Dec 2011 17:43:42 +0000 (18:43 +0100)]
motion masks with and without bands
David Sarrut [Thu, 15 Dec 2011 06:25:38 +0000 (07:25 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 14 Dec 2011 13:18:40 +0000 (14:18 +0100)]
Adapt CMakeLists to include it from other projects
Simon Rit [Wed, 14 Dec 2011 12:50:13 +0000 (13:50 +0100)]
Remove useless common.cmake inclusions
Vivien Delmon [Wed, 14 Dec 2011 09:07:24 +0000 (10:07 +0100)]
Add VTK_LIBRARIES variable for vtk < 5.8.0
Add VTK_LIBRARIES variable for vtk < 5.8.0 and use it.
Romulo Pinho [Tue, 13 Dec 2011 16:38:53 +0000 (17:38 +0100)]
midp masks use new clitkExtractLung version
Romulo Pinho [Tue, 13 Dec 2011 16:34:27 +0000 (17:34 +0100)]
new 4D files as output of midp script
David Sarrut [Tue, 13 Dec 2011 14:29:41 +0000 (15:29 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 13 Dec 2011 13:06:19 +0000 (14:06 +0100)]
Factorize CMakeLists
- Factorize CMakeLists to allow their use in other projects.
Romulo Pinho [Tue, 13 Dec 2011 09:49:47 +0000 (10:49 +0100)]
itkv4 migration
Romulo Pinho [Tue, 13 Dec 2011 09:35:10 +0000 (10:35 +0100)]
ExtractLung - Small corrections in verbose mode
David Sarrut [Tue, 13 Dec 2011 06:38:28 +0000 (07:38 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 12 Dec 2011 17:07:26 +0000 (18:07 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 12 Dec 2011 17:07:11 +0000 (18:07 +0100)]
Revert "itkv4 migration use itk::ThreadIdType"
This reverts commit
a6957c4825e83c61b977ec316dd841878617ffbd .
David Sarrut [Mon, 12 Dec 2011 15:19:00 +0000 (16:19 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 12 Dec 2011 14:31:49 +0000 (15:31 +0100)]
Trachea finding algorithm
- version used in LOLA11
- preserved original version
- new "type" parameter to choose between algorithms
- algorithm-specific params
Romulo Pinho [Mon, 12 Dec 2011 12:33:21 +0000 (13:33 +0100)]
working version of new trachea finding algo
- the one used in LOLA11
Gauthier Bouilhol [Mon, 12 Dec 2011 10:56:50 +0000 (11:56 +0100)]
Optional options corrected
Vivien Delmon [Thu, 8 Dec 2011 13:20:35 +0000 (14:20 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Thu, 8 Dec 2011 13:16:33 +0000 (14:16 +0100)]
Fixed fusion panel size and change default threshold values
+ Span image value on more columns to avoid interface motion when values
have more or less digits.
+ Use 1% as default threshold value and 30% as default transparency
value.
dbcache [Thu, 8 Dec 2011 12:38:52 +0000 (13:38 +0100)]
Added patient mask resampling
- corrects problem when using clitkCombineImage in the mid-P calcs
Simon Rit [Thu, 8 Dec 2011 10:05:30 +0000 (11:05 +0100)]
Applied clitk indentation
Simon Rit [Thu, 8 Dec 2011 10:03:15 +0000 (11:03 +0100)]
GateAsciiImageIO is now cross-platform using itksys::RegularExpression
David Sarrut [Mon, 5 Dec 2011 09:14:45 +0000 (10:14 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 5 Dec 2011 09:14:44 +0000 (10:14 +0100)]
Comment memory display
David Sarrut [Mon, 5 Dec 2011 09:14:18 +0000 (10:14 +0100)]
comment momory display
David Sarrut [Mon, 5 Dec 2011 09:13:44 +0000 (10:13 +0100)]
Correct LR or S1. Add Post S1 S3P. Add Post S1 and Ant S2RL
David Sarrut [Mon, 5 Dec 2011 09:12:24 +0000 (10:12 +0100)]
Start by removing object from target. Minors improvments
Simon Rit [Mon, 5 Dec 2011 07:58:31 +0000 (08:58 +0100)]
Fixed MSVC warning
Simon Rit [Mon, 5 Dec 2011 07:57:38 +0000 (08:57 +0100)]
Define mkstemp for MSVC. Not sure if it also works for other compilers
on Windows
Simon Rit [Mon, 5 Dec 2011 07:56:46 +0000 (08:56 +0100)]
Gate text file I/O is not cross-platform due to regex, compile only on unix
Simon Rit [Sun, 4 Dec 2011 17:18:08 +0000 (18:18 +0100)]
Add quotes in case variables are not defined
Simon Rit [Sun, 4 Dec 2011 17:06:31 +0000 (18:06 +0100)]
Use the gnugetopt.h header part of gengetopt instead of cygwin's
Simon Rit [Sun, 4 Dec 2011 16:35:50 +0000 (17:35 +0100)]
Subdirectory filters has been removed
Simon Rit [Sun, 4 Dec 2011 14:04:46 +0000 (15:04 +0100)]
Removed warnings
Vivien Delmon [Thu, 1 Dec 2011 10:49:01 +0000 (11:49 +0100)]
itk4 migration
- m_Parameters disapeared in itk4. Don't use it in our
ImageToImageMetric.
Vivien Delmon [Wed, 30 Nov 2011 09:45:50 +0000 (10:45 +0100)]
Remove warnings
- Remove warnings with -Wall
It remains some warning about gengetopt generated files
- Use ImageDimension instead of 3 in some filters
David Sarrut [Wed, 30 Nov 2011 06:42:24 +0000 (07:42 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 29 Nov 2011 14:23:31 +0000 (15:23 +0100)]
Bug #650 crash with --fusion and --overlay
- Check if the file exists before opening it
Vivien Delmon [Tue, 29 Nov 2011 12:56:33 +0000 (13:56 +0100)]
BUG seed_arg was used instead of seedRadius_arg
Vivien Delmon [Tue, 29 Nov 2011 11:03:49 +0000 (12:03 +0100)]
Add seedRadius option to clitkRegionGrowing
- Add seedRadius option to clitkRegionGrowing to allow ball of seeds
instead of single pixel seed.
David Sarrut [Thu, 24 Nov 2011 07:14:57 +0000 (08:14 +0100)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Wed, 23 Nov 2011 15:45:22 +0000 (16:45 +0100)]
returned normal function to overlay menu
David Sarrut [Tue, 22 Nov 2011 15:47:33 +0000 (16:47 +0100)]
Merge branch 'master' of /home/dsarrut/clitk3.server