]> Creatis software - clitk.git/log
clitk.git
13 years agoUse vvLib for compiling vv to avoid double compilation of vv files
Simon Rit [Tue, 17 May 2011 16:01:01 +0000 (18:01 +0200)]
Use vvLib for compiling vv to avoid double compilation of vv files

13 years agoAlways file for vv settings instead of registry for Windows
Simon Rit [Tue, 17 May 2011 16:00:14 +0000 (18:00 +0200)]
Always file for vv settings instead of registry for Windows

13 years agoPut registration on a public web page
Simon Rit [Tue, 17 May 2011 13:40:52 +0000 (15:40 +0200)]
Put registration on a public web page

13 years agoUse vvLib also without testing activated
Simon Rit [Tue, 17 May 2011 13:32:47 +0000 (15:32 +0200)]
Use vvLib also without testing activated

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Tue, 17 May 2011 12:57:09 +0000 (14:57 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agotests with google tests coupled with cdash reporting
maxime pech [Tue, 17 May 2011 12:34:53 +0000 (14:34 +0200)]
tests with google tests coupled with cdash reporting

13 years agoitk4 migration
Vivien Delmon [Tue, 17 May 2011 08:06:24 +0000 (10:06 +0200)]
itk4 migration

- Function namespace renamed into Functor in itkMinimumImageFilter.h

13 years agoparameterizing settings path and settings format in constructor
Maxime [Thu, 12 May 2011 13:23:11 +0000 (15:23 +0200)]
parameterizing settings path and settings format in constructor

13 years agoadding subdirectory for the tests
Maxime [Tue, 10 May 2011 08:43:26 +0000 (10:43 +0200)]
adding subdirectory for the tests

13 years agothe dialog is filled with previous settings if the user was already registered
Maxime [Mon, 9 May 2011 13:30:44 +0000 (15:30 +0200)]
the dialog is filled with previous settings if the user was already registered

13 years agoThe Qdialog is now shown in front of the mainWindow (it was behind)
Maxime [Mon, 9 May 2011 08:02:49 +0000 (10:02 +0200)]
The Qdialog is now shown in front of the mainWindow (it was behind)

13 years agoMessage for registering vv's user information
Maxime [Mon, 9 May 2011 07:40:03 +0000 (09:40 +0200)]
Message for registering vv's user information

13 years agoenabling cdash with a localhost server
Maxime [Fri, 6 May 2011 15:47:42 +0000 (17:47 +0200)]
enabling cdash with a localhost server

13 years agofactorising parameters for QSettings
Maxime [Fri, 6 May 2011 15:00:52 +0000 (17:00 +0200)]
factorising parameters for QSettings
we propose the popup only if it is a new version

13 years agoWhen an image is opened it is now added to the recently opened files menu
Maxime [Fri, 6 May 2011 13:51:54 +0000 (15:51 +0200)]
When an image is opened it is now added to the recently opened files menu

13 years ago- version of vv in vvCommon.h
Maxime [Fri, 6 May 2011 12:55:52 +0000 (14:55 +0200)]
- version of vv in vvCommon.h
- register form being launched at every application launch
- calling a local server if the user agrees to send the register form
- writing qtSettings instead of a plain file. if a non QtSettings saved file is present at the same location, it is written over.

13 years agopassing OS name in globals.h
Maxime [Fri, 6 May 2011 12:54:21 +0000 (14:54 +0200)]
passing OS name in globals.h

13 years agoAdding cdash with a single option setted to OFF by default
mpech [Fri, 6 May 2011 12:51:14 +0000 (14:51 +0200)]
Adding cdash with a single option setted to OFF by default

13 years agoremove unused transfert_patients.sh script
gauthier [Fri, 6 May 2011 09:29:26 +0000 (11:29 +0200)]
remove unused transfert_patients.sh script

transfert patients to iRODS is now managed with the
transfert_patients_to_irods.sh script from clitk-test

13 years agoworks with the new create_mhd_4D.sh
gauthier [Fri, 6 May 2011 09:08:16 +0000 (11:08 +0200)]
works with the new create_mhd_4D.sh

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server v1.2.0
Vivien Delmon [Tue, 3 May 2011 16:36:17 +0000 (18:36 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoFactorize time sequence reader code
Vivien Delmon [Tue, 3 May 2011 16:34:56 +0000 (18:34 +0200)]
Factorize time sequence reader code

* Factorize code introduce in previous patch.

13 years agoUpdates in testing
Romulo Pinho [Tue, 3 May 2011 15:43:12 +0000 (17:43 +0200)]
Updates in testing

- replaced include(ctest) with enable_testing(), which is enough to run "make test"
- added a new variable CLITK_BUILD_TESTING to siwtch tests on/off
+ we may need to change this when using CDash for testing...

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Tue, 3 May 2011 15:03:05 +0000 (17:03 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Tue, 3 May 2011 14:59:31 +0000 (16:59 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 3 May 2011 14:53:51 +0000 (16:53 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd error message to prevent bad use of vvImageReader
Vivien Delmon [Tue, 3 May 2011 14:49:15 +0000 (16:49 +0200)]
Add error message to prevent bad use of vvImageReader

* vvImageReader had the same behaviour when used with MERGEDWITHTIME and
  with IMAGEWITHTIME in case of multiple images to load. The second is
  less effective since it composes multiple images to decompose them
  after. I added an error message asking to use MERGEDWITHTIME in this
  case.

13 years agoPrevent vv from instantiated 4D vvImage.
Vivien Delmon [Tue, 3 May 2011 14:44:00 +0000 (16:44 +0200)]
Prevent vv from instantiated 4D vvImage.

* itk4 introduced some concept checking on image dimensions leading to
  compilation error on code instantiated but never used. Adding 4D
  specialized version of vvFromITK avoid these instantiations.

13 years agoConverted license from utf-8 to iso-8859-15
Simon Rit [Tue, 3 May 2011 14:41:50 +0000 (16:41 +0200)]
Converted license from utf-8 to iso-8859-15

13 years agoRemove .cvsignore files
Simon Rit [Tue, 3 May 2011 14:37:05 +0000 (16:37 +0200)]
Remove .cvsignore files

13 years agoRemove .gitignore files
Simon Rit [Tue, 3 May 2011 14:36:24 +0000 (16:36 +0200)]
Remove .gitignore files

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 3 May 2011 14:35:21 +0000 (16:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoCorrect typo (Croped -> Cropped)
dsarrut [Tue, 3 May 2011 14:33:44 +0000 (16:33 +0200)]
Correct typo (Croped -> Cropped)

13 years agoRemove David temp's file
Simon Rit [Tue, 3 May 2011 14:03:41 +0000 (16:03 +0200)]
Remove David temp's file

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 3 May 2011 14:02:20 +0000 (16:02 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoRemove header from CeCILL-B licence
Simon Rit [Tue, 3 May 2011 14:00:24 +0000 (16:00 +0200)]
Remove header from CeCILL-B licence

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 3 May 2011 12:50:20 +0000 (14:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoCorrect bug: when open roi on a non-3D image, the file browser still open.
dsarrut [Tue, 3 May 2011 12:49:52 +0000 (14:49 +0200)]
Correct bug: when open roi on a non-3D image, the file browser still open.

13 years agoitk4 migration:
Vivien Delmon [Tue, 3 May 2011 12:19:27 +0000 (14:19 +0200)]
itk4 migration:

* Add SetDirectionCollapseToSubmatrix() to extractFilter

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 3 May 2011 07:46:44 +0000 (09:46 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 3 May 2011 07:39:32 +0000 (09:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoStrip executable when packing
Simon Rit [Tue, 3 May 2011 07:39:00 +0000 (09:39 +0200)]
Strip executable when packing

13 years agoRemoved warning
Simon Rit [Mon, 2 May 2011 14:44:48 +0000 (16:44 +0200)]
Removed warning

13 years agodelete duplicate file
dsarrut [Mon, 2 May 2011 09:16:49 +0000 (11:16 +0200)]
delete duplicate file

13 years ago(no commit message)
dsarrut [Mon, 2 May 2011 09:22:58 +0000 (11:22 +0200)]

13 years ago(no commit message)
dsarrut [Mon, 2 May 2011 09:22:55 +0000 (11:22 +0200)]

13 years agoadd *~
dsarrut [Mon, 2 May 2011 09:22:23 +0000 (11:22 +0200)]
add *~

13 years agodelete duplicate file
dsarrut [Mon, 2 May 2011 09:16:49 +0000 (11:16 +0200)]
delete duplicate file

13 years agoadd default off to verbose flag
dsarrut [Mon, 2 May 2011 09:16:35 +0000 (11:16 +0200)]
add default off to verbose flag

13 years agoExtract vessels v0.1
dsarrut [Mon, 2 May 2011 09:16:06 +0000 (11:16 +0200)]
Extract vessels v0.1

13 years agochange above/below
dsarrut [Mon, 2 May 2011 09:15:40 +0000 (11:15 +0200)]
change above/below

13 years agoadd crop carotidArtery
dsarrut [Mon, 2 May 2011 09:15:27 +0000 (11:15 +0200)]
add crop carotidArtery

13 years agoadd some ignored files
dsarrut [Mon, 2 May 2011 09:13:53 +0000 (11:13 +0200)]
add some ignored files

13 years agoChange Above/Below with Greater/Lower
dsarrut [Mon, 2 May 2011 09:13:18 +0000 (11:13 +0200)]
Change Above/Below with Greater/Lower

13 years agomake compatible with ITKv4
dsarrut [Mon, 2 May 2011 09:12:49 +0000 (11:12 +0200)]
make compatible with ITKv4

13 years agoIncremented vv MINOR VERSION for release
Simon Rit [Mon, 2 May 2011 07:28:31 +0000 (09:28 +0200)]
Incremented vv MINOR VERSION for release

13 years agoThe absence of libstatgrab is now insensitive
Simon Rit [Mon, 2 May 2011 07:12:43 +0000 (09:12 +0200)]
The absence of libstatgrab is now insensitive

13 years agoAdded .mha in file types managed by vv
Simon Rit [Mon, 2 May 2011 07:11:49 +0000 (09:11 +0200)]
Added .mha in file types managed by vv

13 years agoremoved license header from LICENCE.txt file
Romulo Pinho [Fri, 29 Apr 2011 13:57:30 +0000 (15:57 +0200)]
removed license header from LICENCE.txt file

13 years agojust removing debugging messages
Romulo Pinho [Fri, 29 Apr 2011 07:50:44 +0000 (09:50 +0200)]
just removing debugging messages

13 years agoSolved bug 363 (still to be improved, though)
Romulo Pinho [Fri, 29 Apr 2011 07:38:52 +0000 (09:38 +0200)]
Solved bug 363 (still to be improved, though)

- indeed a z-buffer issue (order of painting)
- actors' positions were being chosen wrt to pixel coordinates, instead of world coordinates
- image actors apparently don't can be directly overlaid on top of each other (no positioning issue)
- VF actor is placed right before or after the start of the image actor's bounding box, depending on the position of the camera
- Clipping box of landmarks has also been corrected
- This solution seems to work robustly, but we never know... ;-)
- Will improve VF by using a vtkSlicer object to interpolate between slices

13 years agoInit IO factories
Simon Rit [Tue, 26 Apr 2011 12:40:49 +0000 (14:40 +0200)]
Init IO factories

13 years agoCorrected GetScalarComponentAsDouble and displayed pixel coordinates in
Simon Rit [Tue, 26 Apr 2011 10:52:12 +0000 (12:52 +0200)]
Corrected GetScalarComponentAsDouble and displayed pixel coordinates in
corner.

13 years agoFixed order problem in condition for analyze orientation handling.
Simon Rit [Mon, 25 Apr 2011 16:01:44 +0000 (18:01 +0200)]
Fixed order problem in condition for analyze orientation handling.

13 years agoSet mode of regular files to non-executable (644) instead of executable (755)
Simon Rit [Mon, 25 Apr 2011 15:01:41 +0000 (17:01 +0200)]
Set mode of regular files to non-executable (644) instead of executable (755)

13 years agoDetect analyze unkown orientation and set identity instead of something
Simon Rit [Fri, 22 Apr 2011 15:00:20 +0000 (17:00 +0200)]
Detect analyze unkown orientation and set identity instead of something
else

13 years agogcc 4.6 compatibility:
Vivien Delmon [Fri, 22 Apr 2011 13:27:02 +0000 (15:27 +0200)]
gcc 4.6 compatibility:

* ptrdiff_t is in the std namespace

13 years agogcc 4.6 compatibility:
Vivien Delmon [Fri, 22 Apr 2011 13:23:33 +0000 (15:23 +0200)]
gcc 4.6 compatibility:

* ptrdiff_t is in the std namespace

13 years agoitk4 migration:
Vivien Delmon [Fri, 22 Apr 2011 13:08:36 +0000 (15:08 +0200)]
itk4 migration:

* Add SetDirectionCollapseToSubmatrix() to extractFilter

13 years agoBug: debugging code not totally commented
Vivien Delmon [Thu, 21 Apr 2011 13:51:46 +0000 (15:51 +0200)]
Bug: debugging code not totally commented

Comment debugging that leads to segfault when no mask is used with
generic metric.

13 years agoMerge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3
Simon Rit [Thu, 21 Apr 2011 12:49:05 +0000 (14:49 +0200)]
Merge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3

13 years agoCorrected displayed value at crosshair in overlay and fusion
Simon Rit [Thu, 21 Apr 2011 12:46:55 +0000 (14:46 +0200)]
Corrected displayed value at crosshair in overlay and fusion

13 years agoDisplay nan instead of no value in overlay and fusion when outside fov
Simon Rit [Thu, 21 Apr 2011 12:35:56 +0000 (14:35 +0200)]
Display nan instead of no value in overlay and fusion when outside fov

13 years agoUse nan of std lib instead of sqrt(-1)
Simon Rit [Thu, 21 Apr 2011 12:34:11 +0000 (14:34 +0200)]
Use nan of std lib instead of sqrt(-1)

13 years agocomment test tools
dsarrut [Thu, 21 Apr 2011 07:31:20 +0000 (09:31 +0200)]
comment test tools

13 years agoremove untracked file
dsarrut [Thu, 21 Apr 2011 07:24:41 +0000 (09:24 +0200)]
remove untracked file

13 years agoignore files
dsarrut [Thu, 21 Apr 2011 07:12:46 +0000 (09:12 +0200)]
ignore files

13 years agoignore files
dsarrut [Thu, 21 Apr 2011 07:12:34 +0000 (09:12 +0200)]
ignore files

13 years agoadd SetRadius with a single int (isotropic)
dsarrut [Thu, 21 Apr 2011 07:09:16 +0000 (09:09 +0200)]
add SetRadius with a single int (isotropic)

13 years agocorrect CLB URL
dsarrut [Thu, 21 Apr 2011 07:03:46 +0000 (09:03 +0200)]
correct CLB URL

13 years agocorrect CLB URL
dsarrut [Thu, 21 Apr 2011 07:01:29 +0000 (09:01 +0200)]
correct CLB URL

13 years agomerge cvs -> git
dsarrut [Thu, 21 Apr 2011 05:05:39 +0000 (07:05 +0200)]
merge cvs -> git

13 years agomerge cvs / git
dsarrut [Thu, 21 Apr 2011 05:05:23 +0000 (07:05 +0200)]
merge cvs / git

13 years agomigration gdcm 2.0 clitkDicom2Image
Vivien Delmon [Wed, 20 Apr 2011 09:37:44 +0000 (11:37 +0200)]
migration gdcm 2.0 clitkDicom2Image

* Remove readDicomHeader from clitkImageCommon which were used only in
  clitkDicom2Image tool.
* Make clitkDicom2Image compatible with gdcm 2.0

13 years agomigration gdcm 2.0 Add macro for itkv3 compatibility
Vivien Delmon [Wed, 20 Apr 2011 09:34:42 +0000 (11:34 +0200)]
migration gdcm 2.0 Add macro for itkv3 compatibility

* Forgot to include Print on gdcm::File into gdcm 2.0 Macro

13 years agoIgnore _* forlders
Vivien Delmon [Wed, 20 Apr 2011 08:33:11 +0000 (10:33 +0200)]
Ignore _* forlders

Ignore _* folders in which I am used to compile different versions.

13 years agoMerge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3
Vivien Delmon [Tue, 19 Apr 2011 16:39:54 +0000 (18:39 +0200)]
Merge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3

13 years agoBug: Forgot Macro for itkv4 specific function
Vivien Delmon [Tue, 19 Apr 2011 16:34:55 +0000 (18:34 +0200)]
Bug: Forgot Macro for itkv4 specific function

13 years agoadded a file with only the license header (test)
Romulo Pinho [Tue, 19 Apr 2011 15:40:51 +0000 (17:40 +0200)]
added a file with only the license header (test)

13 years agoMerge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3
Vivien Delmon [Tue, 19 Apr 2011 13:46:25 +0000 (15:46 +0200)]
Merge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3

13 years agoitkv4 migration:
Vivien Delmon [Tue, 19 Apr 2011 13:39:47 +0000 (15:39 +0200)]
itkv4 migration:

  * last changes in vvQDicomSeriesSelector to use a list of gdcm::reader instead
    of a list of gdcm::File

13 years agochanges in license header
Romulo Pinho [Tue, 19 Apr 2011 11:49:01 +0000 (13:49 +0200)]
changes in license header

Update of license text
  - new CLB's website
  - small type

Inclusion of lincense header wherever necessary

13 years agopath correction to execute tests
Romulo Pinho [Tue, 19 Apr 2011 10:31:28 +0000 (12:31 +0200)]
path correction to execute tests

13 years agocompilation of vv and tests
Romulo Pinho [Mon, 18 Apr 2011 15:10:07 +0000 (17:10 +0200)]
compilation of vv and tests

- vv stand-alone compilation
  + some dependencies from tools were not being compiled

- tests path
  + better path resolution

13 years agoMathieu Malaterre
delmon [Fri, 15 Apr 2011 11:15:46 +0000 (11:15 +0000)]
Mathieu Malaterre
gdcm2 migration:
+ vv open Dicom still a segfault when reading spacing

13 years agoEnable interactive display in tool binarize
srit [Fri, 15 Apr 2011 08:30:21 +0000 (08:30 +0000)]
Enable interactive display in tool binarize

13 years agoSmart pointer for filter in vv tools
srit [Fri, 15 Apr 2011 08:29:19 +0000 (08:29 +0000)]
Smart pointer for filter in vv tools

13 years agoitkv4 migration:
delmon [Thu, 14 Apr 2011 08:25:56 +0000 (08:25 +0000)]
itkv4 migration:
+ Add missing #include<AffineTransform.h>.

13 years agoitkv4 migration:
delmon [Thu, 14 Apr 2011 08:23:40 +0000 (08:23 +0000)]
itkv4 migration:
+ itk::OStringStream disappeared, use std::ostringstream instead.

13 years agoitkv4 migration:
delmon [Thu, 14 Apr 2011 08:22:02 +0000 (08:22 +0000)]
itkv4 migration:
+ itk::BSplineTransform::GetCoefficientImage prototype changed, returning an
array of images instead of a pointer to an image. (c-like table to itk::Array)