]> Creatis software - clitk.git/log
clitk.git
10 years agoAllow to correct for dicom with negative spacing (dcm to mhd)
David Sarrut [Thu, 17 Apr 2014 12:30:05 +0000 (14:30 +0200)]
Allow to correct for dicom with negative spacing (dcm to mhd)

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 20 Mar 2014 11:18:48 +0000 (12:18 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agoDo not remove afs files and job log files at the end of the submission,
Simon Rit [Wed, 12 Mar 2014 07:11:01 +0000 (08:11 +0100)]
Do not remove afs files and job log files at the end of the submission,
   only the other files

10 years agoFix merge with the copy of mac folder and copy the mac folder in the
Simon Rit [Fri, 7 Mar 2014 10:25:07 +0000 (11:25 +0100)]
Fix merge with the copy of mac folder and copy the mac folder in the
results directory

10 years agoEnabled cluster script for CC IN2P3 (based on Pierre's dev)
Simon Rit [Fri, 7 Mar 2014 08:57:32 +0000 (09:57 +0100)]
Enabled cluster script for CC IN2P3 (based on Pierre's dev)

10 years agoFixed displayed slice number. Now 0-based and accurate...
Simon Rit [Thu, 6 Mar 2014 15:56:45 +0000 (16:56 +0100)]
Fixed displayed slice number. Now 0-based and accurate...

10 years agoEnable clitk IO
Simon Rit [Thu, 6 Mar 2014 06:50:39 +0000 (07:50 +0100)]
Enable clitk IO

10 years agoFix for one slice only
Simon Rit [Thu, 27 Feb 2014 08:48:51 +0000 (09:48 +0100)]
Fix for one slice only

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 24 Feb 2014 12:06:33 +0000 (13:06 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agoclitkPointRigidRegistration comment unnecessary header file
Dominik Spinczyk [Wed, 19 Feb 2014 12:45:07 +0000 (13:45 +0100)]
clitkPointRigidRegistration comment unnecessary header file

10 years agoReplace "itk::NumericTraits<PixelType>::Zero" with explicit initialisation (for macos)
David Sarrut [Mon, 17 Feb 2014 14:48:08 +0000 (15:48 +0100)]
Replace "itk::NumericTraits<PixelType>::Zero" with explicit initialisation (for macos)

10 years agoNow calculate FRE
Dominik Spinczyk [Mon, 17 Feb 2014 09:48:18 +0000 (10:48 +0100)]
Now calculate FRE

10 years agoMoved back accidentally deleted tools
Dominik Spinczyk [Tue, 4 Feb 2014 12:07:28 +0000 (13:07 +0100)]
Moved back accidentally deleted tools

10 years agoRemoving polish comments
Dominik Spincwyk [Mon, 3 Feb 2014 15:24:05 +0000 (16:24 +0100)]
Removing polish comments

10 years agoFirst version of PointRigidRegistration
Dominik Spincwyk [Mon, 3 Feb 2014 14:44:27 +0000 (15:44 +0100)]
First version of PointRigidRegistration

10 years agoAdd explicit origin when resample
David Sarrut [Tue, 28 Jan 2014 15:20:09 +0000 (16:20 +0100)]
Add explicit origin when resample

10 years agoTake input/output spacing for origin
David Sarrut [Tue, 28 Jan 2014 15:19:34 +0000 (16:19 +0100)]
Take input/output spacing for origin

10 years agoDo not remove G4 data files
David Sarrut [Mon, 27 Jan 2014 14:21:52 +0000 (15:21 +0100)]
Do not remove G4 data files

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 20 Jan 2014 15:50:37 +0000 (16:50 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agonew tool = gaussian blur filtering + improved gradient magnitude tool + added help...
Benoît Presles [Fri, 17 Jan 2014 18:16:49 +0000 (19:16 +0100)]
new tool = gaussian blur filtering + improved gradient magnitude tool + added help to clitkImageLaplacian

10 years agoBack to the correct version... I think I am right...
Benoît Presles [Fri, 17 Jan 2014 18:04:09 +0000 (19:04 +0100)]
Back to the correct version... I think I am right...

10 years agoTrailing spaces
David Sarrut [Tue, 14 Jan 2014 07:11:30 +0000 (08:11 +0100)]
Trailing spaces

10 years agoAdd dcm extension
David Sarrut [Tue, 14 Jan 2014 07:10:44 +0000 (08:10 +0100)]
Add dcm extension

10 years agoAdd display matrix option
David Sarrut [Tue, 14 Jan 2014 07:09:55 +0000 (08:09 +0100)]
Add display matrix option

10 years agoRemove warning sprintf
David Sarrut [Tue, 14 Jan 2014 06:54:55 +0000 (07:54 +0100)]
Remove warning sprintf

10 years agoCopy macro files for log
David Sarrut [Tue, 14 Jan 2014 06:54:33 +0000 (07:54 +0100)]
Copy macro files for log

10 years agoNow work for single thread simulation
David Sarrut [Tue, 14 Jan 2014 06:54:09 +0000 (07:54 +0100)]
Now work for single thread simulation

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 10 Jan 2014 10:15:18 +0000 (11:15 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agoBack to the correct version... Benoit you will be hanged !
David Sarrut [Fri, 10 Jan 2014 10:14:50 +0000 (11:14 +0100)]
Back to the correct version... Benoit you will be hanged !

10 years agonew tool to normalize an image
Benoît Presles [Thu, 9 Jan 2014 13:43:47 +0000 (14:43 +0100)]
new tool to normalize an image

10 years agoDetect ITK_USE_SYSTEM_GDCM with target
Simon Rit [Sat, 4 Jan 2014 15:23:43 +0000 (16:23 +0100)]
Detect ITK_USE_SYSTEM_GDCM with target

10 years agoRemove setmode definition since it was not used and it prevents
Simon Rit [Fri, 3 Jan 2014 18:27:28 +0000 (19:27 +0100)]
Remove setmode definition since it was not used and it prevents
compilation on MacOS

11 years agoFixed issues with --like option
Simon Rit [Wed, 18 Dec 2013 15:25:28 +0000 (16:25 +0100)]
Fixed issues with --like option

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 10 Dec 2013 12:20:48 +0000 (13:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoUpdated help of vv command line
Simon Rit [Tue, 10 Dec 2013 12:14:15 +0000 (13:14 +0100)]
Updated help of vv command line

11 years agoRobust detection of GDCM compilation by ITK: made it robust to ITK installation
Simon Rit [Mon, 9 Dec 2013 20:55:01 +0000 (21:55 +0100)]
Robust detection of GDCM compilation by ITK: made it robust to ITK installation

11 years agoinverted IO reader order to solve a bug with vox files
Benoît Presles [Wed, 27 Nov 2013 09:54:56 +0000 (10:54 +0100)]
inverted IO reader order to solve a bug with vox files

11 years agodeleted an extra space in order to be able to grep the results of clitkImageInfo
Benoît Presles [Thu, 21 Nov 2013 12:44:39 +0000 (13:44 +0100)]
deleted an extra space in order to be able to grep the results of clitkImageInfo

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 12 Nov 2013 09:30:52 +0000 (10:30 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agonew tool to normalize image intensity
Benoît Presles [Tue, 12 Nov 2013 09:29:58 +0000 (10:29 +0100)]
new tool to normalize image intensity

11 years agoWhen clicking on the all button, also propagate fusion and overlay W/L
Simon Rit [Fri, 8 Nov 2013 11:21:48 +0000 (12:21 +0100)]
When clicking on the all button, also propagate fusion and overlay W/L

11 years agoAdded missing init for IO factories
Simon Rit [Fri, 8 Nov 2013 11:09:55 +0000 (12:09 +0100)]
Added missing init for IO factories

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 31 Oct 2013 15:47:25 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 31 Oct 2013 15:47:14 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoTool to multiply 4x4 matrices
Simon Rit [Thu, 31 Oct 2013 15:46:55 +0000 (16:46 +0100)]
Tool to multiply 4x4 matrices

11 years agoOption to save VV transform (mhd + .mat) in the new mhd
Simon Rit [Thu, 31 Oct 2013 15:45:21 +0000 (16:45 +0100)]
Option to save VV transform (mhd + .mat) in the new mhd

11 years agoMerge several run results in one
Simon Rit [Thu, 31 Oct 2013 14:43:11 +0000 (15:43 +0100)]
Merge several run results in one

11 years agoAllow symbolic links
Simon Rit [Thu, 31 Oct 2013 14:37:12 +0000 (15:37 +0100)]
Allow symbolic links

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 29 Oct 2013 18:00:31 +0000 (19:00 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoadded the possibility to compute the Laplacian of Gaussian (LoG) of an image
Benoît Presles [Tue, 29 Oct 2013 17:56:40 +0000 (18:56 +0100)]
added the possibility to compute the Laplacian of Gaussian (LoG) of an image

11 years agoRemove itkSetMacro
Vivien Delmon [Mon, 28 Oct 2013 12:24:45 +0000 (13:24 +0100)]
Remove itkSetMacro

In debug this Macro need the operator << (std::cout) which is not
defined for std::vector. Could be an idea to add a
clitkSetMacroWithoutDebug.

There is a discussion about this on the ITK developper ML :
http://www.itk.org/pipermail/insight-developers/2011-April/018174.html
But with no conclusion ...

11 years agoRemove useless include and trailing whitespaces
Vivien Delmon [Mon, 28 Oct 2013 12:23:45 +0000 (13:23 +0100)]
Remove useless include and trailing whitespaces

11 years agoDo not compile clitkDice with ITK < 4
Vivien Delmon [Fri, 25 Oct 2013 13:44:38 +0000 (15:44 +0200)]
Do not compile clitkDice with ITK < 4

clitkDice needs an itkLabelOverlapMeasuresImageFilter.h that was present
in clitk but has been removed (by David Sarrut !!) in
f4854864b1e9dacf51ffee720eeb4c72edb59e4f
The class is now part of ITK > 4.

11 years agonew tool to compute the laplacian of an image
Benoît Presles [Fri, 18 Oct 2013 13:12:34 +0000 (15:12 +0200)]
new tool to compute the laplacian of an image

11 years agodeleted an extra quote
Benoît Presles [Thu, 17 Oct 2013 16:18:23 +0000 (18:18 +0200)]
deleted an extra quote

11 years agoadded an optional mask + the possibility to get a normalized output image
Benoît Presles [Thu, 17 Oct 2013 16:11:18 +0000 (18:11 +0200)]
added an optional mask + the possibility to get a normalized output image

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Wed, 16 Oct 2013 14:05:51 +0000 (16:05 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agogradient magnitude tool
Benoît Presles [Wed, 16 Oct 2013 14:04:59 +0000 (16:04 +0200)]
gradient magnitude tool

11 years agoRefactor cluster_tools CMakeLists
Vivien Delmon [Wed, 9 Oct 2013 09:16:07 +0000 (11:16 +0200)]
Refactor cluster_tools CMakeLists

- Remove add_subdiretory in tools/CMakeLists.txt
- Add add_subdiretory in CMakeLists.txt
- Add test to install cluster_tools if CLITK_BUILD_TOOLS is ON

11 years agoRemoved warning introcued by commit 19f3573f7b12d29bb33c80311ee1e8ff7bcb01f3
Simon Rit [Thu, 3 Oct 2013 10:49:47 +0000 (12:49 +0200)]
Removed warning introcued by commit 19f3573f7b12d29bb33c80311ee1e8ff7bcb01f3

11 years agoAdd mha in uncertainty files and error message if unhandled file format
Simon Rit [Mon, 30 Sep 2013 14:14:29 +0000 (16:14 +0200)]
Add mha in uncertainty files and error message if unhandled file format

11 years agoAllow for uncertainties which name does not start with output
Simon Rit [Mon, 30 Sep 2013 14:09:44 +0000 (16:09 +0200)]
Allow for uncertainties which name does not start with output

11 years agoRemove warning with .mha files
Simon Rit [Mon, 23 Sep 2013 14:26:00 +0000 (16:26 +0200)]
Remove warning with .mha files

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Mon, 23 Sep 2013 14:21:04 +0000 (16:21 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoImproved Elastix conversion
Simon Rit [Fri, 13 Sep 2013 19:36:01 +0000 (21:36 +0200)]
Improved Elastix conversion

11 years agorevert the local CLITK_USE_SYSTEM_GDCM path - not wanted to commit it
Benoît Presles [Fri, 6 Sep 2013 08:03:08 +0000 (10:03 +0200)]
revert the local CLITK_USE_SYSTEM_GDCM path - not wanted to commit it

11 years agoMedian Filter + some bug corrections in Resample Image Filter
Benoît Presles [Thu, 5 Sep 2013 17:07:55 +0000 (19:07 +0200)]
Median Filter + some bug corrections in Resample Image Filter

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 4 Sep 2013 12:31:41 +0000 (14:31 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoUse IsNormal instead of std::isnormal (C++11)
Vivien Delmon [Wed, 21 Aug 2013 09:54:40 +0000 (11:54 +0200)]
Use IsNormal instead of std::isnormal (C++11)

std::isnormal is a C++11 function not available in VS 2012
use IsNormal defined in clitkPortability instead

11 years agoRevert "Remove C++11 call to isnormal"
Vivien Delmon [Wed, 21 Aug 2013 09:32:52 +0000 (11:32 +0200)]
Revert "Remove C++11 call to isnormal"

This reverts commit a845c6a04ecfeedc8eced5f4051e06ee88c59e90.

11 years agoRemove C++11 call to isnormal
Vivien Delmon [Wed, 21 Aug 2013 09:18:27 +0000 (11:18 +0200)]
Remove C++11 call to isnormal

- std::isnormal is not available under windows VS12. Implement it using
numeric_limits functions

11 years agoRemove build clitk options in superbuild, add gdcm 2.2.4.
agata [Wed, 14 Aug 2013 19:11:15 +0000 (21:11 +0200)]
Remove build clitk options in superbuild, add gdcm 2.2.4.

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 29 Jul 2013 06:07:03 +0000 (08:07 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoRemove warning on mac (vtk)
David Sarrut [Mon, 29 Jul 2013 06:05:47 +0000 (08:05 +0200)]
Remove warning on mac (vtk)

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Agata Krason [Fri, 26 Jul 2013 15:35:46 +0000 (17:35 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoSuperbuild : Change version gdcm - 2.2.4, itk 4.4.0 and add make install to VV.
Agata Krason [Fri, 26 Jul 2013 15:33:06 +0000 (17:33 +0200)]
Superbuild : Change version gdcm - 2.2.4, itk 4.4.0 and add make install to VV.

11 years agoAdd cluster_tool scripts in install
David Sarrut [Fri, 26 Jul 2013 13:39:53 +0000 (15:39 +0200)]
Add cluster_tool scripts in install

11 years agoFirst version of gate_make_merge_release (for gatelab)
David Sarrut [Fri, 26 Jul 2013 13:12:27 +0000 (15:12 +0200)]
First version of gate_make_merge_release (for gatelab)

11 years agoAdd clitkImageUncertainty (for gate dose uncertainty)
David Sarrut [Fri, 26 Jul 2013 13:05:15 +0000 (15:05 +0200)]
Add clitkImageUncertainty (for gate dose uncertainty)

11 years agoMoved from repository clitk.private to tools
David Sarrut [Fri, 26 Jul 2013 13:01:41 +0000 (15:01 +0200)]
Moved from repository clitk.private to tools

11 years agouncertainty=100% when no dose in voxel (as in Gate)
gueth [Thu, 3 Mar 2011 15:03:30 +0000 (15:03 +0000)]
uncertainty=100% when no dose in voxel (as in Gate)

11 years agocompatibility with the newest gengetopt
schaerer [Thu, 28 Oct 2010 12:42:11 +0000 (12:42 +0000)]
compatibility with the newest gengetopt

11 years ago- make compatible with new signal folder - add common.cmake (to generate ggo files)
dsarrut [Tue, 9 Mar 2010 15:45:11 +0000 (15:45 +0000)]
- make compatible with new signal folder - add common.cmake (to generate ggo files)

11 years agotests_dav
schaerer [Tue, 19 Jan 2010 16:02:52 +0000 (16:02 +0000)]
tests_dav

11 years agoAdd computation of statistical uncertainty
David Sarrut [Fri, 26 Jul 2013 12:57:35 +0000 (14:57 +0200)]
Add computation of statistical uncertainty

11 years agoindent
David Sarrut [Fri, 26 Jul 2013 06:58:16 +0000 (08:58 +0200)]
indent

11 years agoAdd tool_install for clitkMergeRootFiles & clitkMergeAsciiDoseActor
David Sarrut [Fri, 26 Jul 2013 06:52:03 +0000 (08:52 +0200)]
Add tool_install for clitkMergeRootFiles & clitkMergeAsciiDoseActor

11 years agoAdd clitkMergeRootFiles
David Sarrut [Fri, 26 Jul 2013 06:47:54 +0000 (08:47 +0200)]
Add clitkMergeRootFiles

11 years agoMoved from repository clitk.private to tools
David Sarrut [Fri, 26 Jul 2013 06:44:39 +0000 (08:44 +0200)]
Moved from repository clitk.private to tools

11 years agomerger works when files are ordered
Pierre Gueth [Thu, 7 Feb 2013 14:35:00 +0000 (15:35 +0100)]
merger works when files are ordered

11 years agoswitched to gjm merger for pet
Pierre Gueth [Thu, 7 Feb 2013 14:01:20 +0000 (15:01 +0100)]
switched to gjm merger for pet

11 years agocopied gatemergemanager from gate-creatis
Pierre Gueth [Thu, 7 Feb 2013 13:37:24 +0000 (14:37 +0100)]
copied gatemergemanager from gate-creatis

11 years agomv file
David Sarrut [Fri, 26 Jul 2013 06:43:32 +0000 (08:43 +0200)]
mv file

11 years agoremove files
David Sarrut [Fri, 26 Jul 2013 06:43:19 +0000 (08:43 +0200)]
remove files

11 years agoMoved from repository clitk.private to tools
David Sarrut [Fri, 26 Jul 2013 06:33:53 +0000 (08:33 +0200)]
Moved from repository clitk.private to tools

11 years agopet merger seams to work
Pierre Gueth [Thu, 7 Feb 2013 15:03:32 +0000 (16:03 +0100)]
pet merger seams to work

11 years agomerger works when files are ordered
Pierre Gueth [Thu, 7 Feb 2013 14:35:00 +0000 (15:35 +0100)]
merger works when files are ordered

11 years agoswitched to gjm merger for pet
Pierre Gueth [Thu, 7 Feb 2013 14:01:20 +0000 (15:01 +0100)]
switched to gjm merger for pet

11 years agomore root merger
Pierre Gueth [Thu, 7 Feb 2013 13:17:09 +0000 (14:17 +0100)]
more root merger

11 years agovariable name set
Pierre Gueth [Mon, 4 Feb 2013 12:18:11 +0000 (13:18 +0100)]
variable name set