]>
Creatis software - clitk.git/log
dsarrut [Fri, 22 Oct 2010 07:32:54 +0000 (07:32 +0000)]
cosmetic
dsarrut [Fri, 22 Oct 2010 07:19:27 +0000 (07:19 +0000)]
make explicit write/read on disk
dsarrut [Fri, 22 Oct 2010 07:19:04 +0000 (07:19 +0000)]
remove unused
dsarrut [Fri, 22 Oct 2010 07:18:37 +0000 (07:18 +0000)]
cosmetic
schaerer [Thu, 21 Oct 2010 16:02:37 +0000 (16:02 +0000)]
fix warning
srit [Thu, 21 Oct 2010 12:56:57 +0000 (12:56 +0000)]
Implemented alternative to former split: split on open.
srit [Wed, 20 Oct 2010 15:01:03 +0000 (15:01 +0000)]
Implemented new vvImage scheme: the itk to vtk image converter is now kept as a class member for improved memory handling.
srit [Wed, 20 Oct 2010 14:59:13 +0000 (14:59 +0000)]
Removed action split image from menu, will be reimplemented as a read option
srit [Wed, 20 Oct 2010 14:56:47 +0000 (14:56 +0000)]
Disable tools crop and rigid registration
schaerer [Wed, 20 Oct 2010 13:34:18 +0000 (13:34 +0000)]
itkv4 compatibility
schaerer [Tue, 19 Oct 2010 13:08:05 +0000 (13:08 +0000)]
space-proofness
srit [Fri, 15 Oct 2010 15:37:37 +0000 (15:37 +0000)]
Corrected use of vtkSmartPointers and mistakes in constructor / destructor
dsarrut [Fri, 15 Oct 2010 06:15:46 +0000 (06:15 +0000)]
add clitkCommon.h
dsarrut [Fri, 15 Oct 2010 06:15:21 +0000 (06:15 +0000)]
-add dependencies for all autotools
schaerer [Thu, 14 Oct 2010 13:33:00 +0000 (13:33 +0000)]
fix linking problem
dsarrut [Thu, 14 Oct 2010 09:53:54 +0000 (09:53 +0000)]
change include (itkMacro) to help compilation with ITK4
schaerer [Wed, 13 Oct 2010 15:20:04 +0000 (15:20 +0000)]
mechanism for handling tool dependencies in a modular way.
We still need to describe those dependencies more finely
schaerer [Wed, 13 Oct 2010 15:06:56 +0000 (15:06 +0000)]
separate tools from the rest
srit [Tue, 12 Oct 2010 21:30:15 +0000 (21:30 +0000)]
Removed vtkGridTransform and turned off vtkImageReslice with a define
dsarrut [Mon, 11 Oct 2010 14:55:50 +0000 (14:55 +0000)]
add clitkCommon.h
srit [Wed, 6 Oct 2010 15:39:21 +0000 (15:39 +0000)]
lrint is still not portable
srit [Wed, 6 Oct 2010 15:38:45 +0000 (15:38 +0000)]
ostream does not handle std::string (check http://www.cplusplus.com/reference/iostream/ostream/operator%3C%3C/)
schaerer [Tue, 5 Oct 2010 18:00:15 +0000 (18:00 +0000)]
revived old fast_make script / clean some dependencies
schaerer [Tue, 5 Oct 2010 14:17:13 +0000 (14:17 +0000)]
remove unused file
schaerer [Tue, 5 Oct 2010 14:16:36 +0000 (14:16 +0000)]
create clitkDD.h to avoid the heavy dependency on clitkCommon.h only for DD
schaerer [Tue, 5 Oct 2010 13:26:37 +0000 (13:26 +0000)]
allow the user to chose the axis along which to compute the mip
schaerer [Tue, 5 Oct 2010 13:01:03 +0000 (13:01 +0000)]
move clitkConfiguration.h out of clitkCommon to avoid costly recompilations
fix harmless warning
dsarrut [Tue, 5 Oct 2010 12:27:57 +0000 (12:27 +0000)]
- remove unuseful file
dsarrut [Tue, 5 Oct 2010 09:31:39 +0000 (09:31 +0000)]
*** empty log message ***
dsarrut [Tue, 5 Oct 2010 09:31:29 +0000 (09:31 +0000)]
new Airway filter (experimental)
dsarrut [Tue, 5 Oct 2010 09:31:03 +0000 (09:31 +0000)]
separate airway tracking from extract lung
dsarrut [Tue, 5 Oct 2010 09:30:30 +0000 (09:30 +0000)]
remove debug DD
dsarrut [Tue, 5 Oct 2010 09:30:11 +0000 (09:30 +0000)]
correct bug (copy message)
dsarrut [Mon, 4 Oct 2010 08:06:30 +0000 (08:06 +0000)]
documentation for tree.hh
dsarrut [Mon, 4 Oct 2010 08:06:16 +0000 (08:06 +0000)]
manage tree structures
dsarrut [Mon, 4 Oct 2010 08:05:25 +0000 (08:05 +0000)]
manage anatomical features DB
dsarrut [Mon, 4 Oct 2010 08:04:16 +0000 (08:04 +0000)]
error are now handled by exception
dsarrut [Mon, 4 Oct 2010 08:03:34 +0000 (08:03 +0000)]
add Anatomical DB to library
dsarrut [Mon, 4 Oct 2010 08:03:04 +0000 (08:03 +0000)]
now dump anatomical info (carina position) into a DB
dsarrut [Mon, 4 Oct 2010 07:54:45 +0000 (07:54 +0000)]
read carina position into DB
dsarrut [Mon, 4 Oct 2010 07:54:23 +0000 (07:54 +0000)]
add lower limits for lung (experimental)
dsarrut [Mon, 4 Oct 2010 07:52:56 +0000 (07:52 +0000)]
now dump anatomical info (carina position) into a DB
dsarrut [Mon, 4 Oct 2010 07:51:58 +0000 (07:51 +0000)]
add anatomical feature DB capability to a filter
dsarrut [Mon, 4 Oct 2010 07:49:21 +0000 (07:49 +0000)]
remove debug code
dsarrut [Mon, 4 Oct 2010 07:48:42 +0000 (07:48 +0000)]
add "get number of connected components" function
dsarrut [Mon, 4 Oct 2010 07:47:46 +0000 (07:47 +0000)]
add exception file
dsarrut [Mon, 4 Oct 2010 07:46:52 +0000 (07:46 +0000)]
error are now handled by exception
dsarrut [Mon, 4 Oct 2010 07:46:34 +0000 (07:46 +0000)]
Exception for error management
schaerer [Tue, 28 Sep 2010 11:23:12 +0000 (11:23 +0000)]
changes for CTest
srit [Wed, 22 Sep 2010 09:10:24 +0000 (09:10 +0000)]
Skip last level corrections
dsarrut [Wed, 22 Sep 2010 03:23:29 +0000 (03:23 +0000)]
add skipLastPyramidLevel option
srit [Tue, 21 Sep 2010 10:33:46 +0000 (10:33 +0000)]
Removed unused txx file
grevillot [Tue, 21 Sep 2010 09:37:33 +0000 (09:37 +0000)]
*** empty log message ***
srit [Thu, 16 Sep 2010 15:53:54 +0000 (15:53 +0000)]
Fusion window / level was rounded to int for no good reason
srit [Thu, 16 Sep 2010 15:53:15 +0000 (15:53 +0000)]
Fusion windows level is now 4 decimals
srit [Thu, 16 Sep 2010 15:51:10 +0000 (15:51 +0000)]
Attempt to solve Kumar's issue
srit [Thu, 16 Sep 2010 15:47:28 +0000 (15:47 +0000)]
Reformat with astyle, Kumar had to convert it to dos style
srit [Thu, 16 Sep 2010 13:45:42 +0000 (13:45 +0000)]
Problem with slot in previous commit. Corrected based on overlay example
srit [Thu, 16 Sep 2010 13:29:04 +0000 (13:29 +0000)]
Parsing fusion image from command line
srit [Thu, 16 Sep 2010 12:37:34 +0000 (12:37 +0000)]
Changed headers
srit [Thu, 16 Sep 2010 10:45:45 +0000 (10:45 +0000)]
Modified padding for empire
schaerer [Thu, 16 Sep 2010 08:38:15 +0000 (08:38 +0000)]
support for spaces in file names
srit [Wed, 15 Sep 2010 14:51:26 +0000 (14:51 +0000)]
Do pad before connecting components
srit [Wed, 15 Sep 2010 08:16:51 +0000 (08:16 +0000)]
There were some f***** differences between clitk2 and clitk3 in the BLUT. Tried to take clitk2 version which is more recent according to cvs. They don't look big but they have an effect. Please check!
srit [Mon, 13 Sep 2010 16:40:00 +0000 (16:40 +0000)]
Removed unrequired library linking
schaerer [Fri, 10 Sep 2010 12:51:37 +0000 (12:51 +0000)]
a hopefully better option parser for vv
srit [Fri, 10 Sep 2010 12:38:23 +0000 (12:38 +0000)]
Try to adapt the filter to Jef's clitk2 solution.
schaerer [Thu, 9 Sep 2010 15:32:19 +0000 (15:32 +0000)]
support for the precise flexmap
srit [Wed, 8 Sep 2010 17:48:56 +0000 (17:48 +0000)]
Implemented like option, only the origin is missing
srit [Wed, 8 Sep 2010 17:28:30 +0000 (17:28 +0000)]
Do not propose an option that you have removed!
dsarrut [Wed, 8 Sep 2010 14:14:08 +0000 (14:14 +0000)]
add thread verbose
dsarrut [Wed, 8 Sep 2010 14:13:38 +0000 (14:13 +0000)]
take image start index into account
dsarrut [Wed, 8 Sep 2010 14:11:21 +0000 (14:11 +0000)]
change ROIFilter to extractImageFilter
dsarrut [Wed, 8 Sep 2010 14:10:51 +0000 (14:10 +0000)]
update buffered region
srit [Wed, 8 Sep 2010 13:50:29 +0000 (13:50 +0000)]
Add float input to extract bones
dsarrut [Wed, 8 Sep 2010 13:05:43 +0000 (13:05 +0000)]
extract trachea skeleton
srit [Wed, 8 Sep 2010 12:53:57 +0000 (12:53 +0000)]
Added image info and meta-info
srit [Wed, 8 Sep 2010 12:50:43 +0000 (12:50 +0000)]
Hard code iamge information for Synergy since it's the only known source of his image (so far).
dsarrut [Wed, 8 Sep 2010 12:38:12 +0000 (12:38 +0000)]
add smooth option to extract bones
srit [Wed, 8 Sep 2010 12:04:44 +0000 (12:04 +0000)]
Account for window/level of fusion image
srit [Wed, 8 Sep 2010 09:56:52 +0000 (09:56 +0000)]
Add dicom RT dose to list of IO factories handled by clitk
srit [Wed, 8 Sep 2010 09:56:02 +0000 (09:56 +0000)]
Converted plastimatch dicom RT dose reader in ITK IO format.
schaerer [Tue, 7 Sep 2010 16:39:55 +0000 (16:39 +0000)]
improvements to the Dicom struct handling code, including better computation of extruding
depth based on actual contour spacing and not image spacing
dsarrut [Tue, 7 Sep 2010 10:11:19 +0000 (10:11 +0000)]
correct ggo (no upper case)
schaerer [Mon, 6 Sep 2010 14:57:09 +0000 (14:57 +0000)]
add SCAN files
schaerer [Mon, 6 Sep 2010 14:18:06 +0000 (14:18 +0000)]
minor fixes
schaerer [Fri, 3 Sep 2010 09:43:14 +0000 (09:43 +0000)]
new gengetopt versions don't seem to like capital letters
srit [Fri, 3 Sep 2010 08:44:57 +0000 (08:44 +0000)]
Removed writing of temp file
srit [Thu, 2 Sep 2010 09:39:03 +0000 (09:39 +0000)]
Removed Jef's tmp files
srit [Wed, 1 Sep 2010 15:21:36 +0000 (15:21 +0000)]
Formatting + hack for the empire challenge: remove lungs from air thresholding when computing air feature image.
srit [Tue, 31 Aug 2010 11:15:13 +0000 (11:15 +0000)]
Rolled back to version without smart pointers for vtkImageData.
srit [Mon, 30 Aug 2010 16:31:22 +0000 (16:31 +0000)]
Commented out hard coded temp file
srit [Mon, 30 Aug 2010 13:42:52 +0000 (13:42 +0000)]
Removed memory leak
srit [Mon, 30 Aug 2010 13:41:53 +0000 (13:41 +0000)]
Rolled back to version 1.7 because it was crashing with transforms. I couldn't figure out a better solution.
srit [Tue, 24 Aug 2010 09:27:36 +0000 (09:27 +0000)]
Wrong naming of the ggo libraries.
bouilhol [Wed, 18 Aug 2010 18:04:16 +0000 (18:04 +0000)]
workaround for bug in itk/gdcmDict.h : gdcm headers seem to need to be included
before the itk ones, otherwise there is a conflict between stdint.h and itkIntTypes.h
bouilhol [Wed, 18 Aug 2010 15:32:20 +0000 (15:32 +0000)]
workaround for bug in itk/gdcmDict.h : gdcm headers seem to need to be included
before the itk ones, otherwise there is a conflict between stdint.h and itkIntTypes.h
bharath [Thu, 12 Aug 2010 18:40:48 +0000 (18:40 +0000)]
with options for selecting outputs
bharath [Thu, 12 Aug 2010 18:39:58 +0000 (18:39 +0000)]
with matrix arg option
bharath [Thu, 12 Aug 2010 18:39:01 +0000 (18:39 +0000)]
Functionality to Delete Last Image