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Creatis software - clitk.git/log
Maxime [Fri, 6 May 2011 12:55:52 +0000 (14:55 +0200)]
- version of vv in vvCommon.h
- register form being launched at every application launch
- calling a local server if the user agrees to send the register form
- writing qtSettings instead of a plain file. if a non QtSettings saved file is present at the same location, it is written over.
Maxime [Fri, 6 May 2011 12:54:21 +0000 (14:54 +0200)]
passing OS name in globals.h
mpech [Fri, 6 May 2011 12:51:14 +0000 (14:51 +0200)]
Adding cdash with a single option setted to OFF by default
Vivien Delmon [Tue, 3 May 2011 16:36:17 +0000 (18:36 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 3 May 2011 16:34:56 +0000 (18:34 +0200)]
Factorize time sequence reader code
* Factorize code introduce in previous patch.
Romulo Pinho [Tue, 3 May 2011 15:43:12 +0000 (17:43 +0200)]
Updates in testing
- replaced include(ctest) with enable_testing(), which is enough to run "make test"
- added a new variable CLITK_BUILD_TESTING to siwtch tests on/off
+ we may need to change this when using CDash for testing...
Romulo Pinho [Tue, 3 May 2011 15:03:05 +0000 (17:03 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Tue, 3 May 2011 14:59:31 +0000 (16:59 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 3 May 2011 14:53:51 +0000 (16:53 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 3 May 2011 14:49:15 +0000 (16:49 +0200)]
Add error message to prevent bad use of vvImageReader
* vvImageReader had the same behaviour when used with MERGEDWITHTIME and
with IMAGEWITHTIME in case of multiple images to load. The second is
less effective since it composes multiple images to decompose them
after. I added an error message asking to use MERGEDWITHTIME in this
case.
Vivien Delmon [Tue, 3 May 2011 14:44:00 +0000 (16:44 +0200)]
Prevent vv from instantiated 4D vvImage.
* itk4 introduced some concept checking on image dimensions leading to
compilation error on code instantiated but never used. Adding 4D
specialized version of vvFromITK avoid these instantiations.
Simon Rit [Tue, 3 May 2011 14:41:50 +0000 (16:41 +0200)]
Converted license from utf-8 to iso-8859-15
Simon Rit [Tue, 3 May 2011 14:37:05 +0000 (16:37 +0200)]
Remove .cvsignore files
Simon Rit [Tue, 3 May 2011 14:36:24 +0000 (16:36 +0200)]
Remove .gitignore files
Simon Rit [Tue, 3 May 2011 14:35:21 +0000 (16:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 3 May 2011 14:33:44 +0000 (16:33 +0200)]
Correct typo (Croped -> Cropped)
Simon Rit [Tue, 3 May 2011 14:03:41 +0000 (16:03 +0200)]
Remove David temp's file
Simon Rit [Tue, 3 May 2011 14:02:20 +0000 (16:02 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 3 May 2011 14:00:24 +0000 (16:00 +0200)]
Remove header from CeCILL-B licence
dsarrut [Tue, 3 May 2011 12:50:20 +0000 (14:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 3 May 2011 12:49:52 +0000 (14:49 +0200)]
Correct bug: when open roi on a non-3D image, the file browser still open.
Vivien Delmon [Tue, 3 May 2011 12:19:27 +0000 (14:19 +0200)]
itk4 migration:
* Add SetDirectionCollapseToSubmatrix() to extractFilter
dsarrut [Tue, 3 May 2011 07:46:44 +0000 (09:46 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 3 May 2011 07:39:32 +0000 (09:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 3 May 2011 07:39:00 +0000 (09:39 +0200)]
Strip executable when packing
Simon Rit [Mon, 2 May 2011 14:44:48 +0000 (16:44 +0200)]
Removed warning
dsarrut [Mon, 2 May 2011 09:16:49 +0000 (11:16 +0200)]
delete duplicate file
dsarrut [Mon, 2 May 2011 09:22:58 +0000 (11:22 +0200)]
dsarrut [Mon, 2 May 2011 09:22:55 +0000 (11:22 +0200)]
dsarrut [Mon, 2 May 2011 09:22:23 +0000 (11:22 +0200)]
add *~
dsarrut [Mon, 2 May 2011 09:16:49 +0000 (11:16 +0200)]
delete duplicate file
dsarrut [Mon, 2 May 2011 09:16:35 +0000 (11:16 +0200)]
add default off to verbose flag
dsarrut [Mon, 2 May 2011 09:16:06 +0000 (11:16 +0200)]
Extract vessels v0.1
dsarrut [Mon, 2 May 2011 09:15:40 +0000 (11:15 +0200)]
change above/below
dsarrut [Mon, 2 May 2011 09:15:27 +0000 (11:15 +0200)]
add crop carotidArtery
dsarrut [Mon, 2 May 2011 09:13:53 +0000 (11:13 +0200)]
add some ignored files
dsarrut [Mon, 2 May 2011 09:13:18 +0000 (11:13 +0200)]
Change Above/Below with Greater/Lower
dsarrut [Mon, 2 May 2011 09:12:49 +0000 (11:12 +0200)]
make compatible with ITKv4
Simon Rit [Mon, 2 May 2011 07:28:31 +0000 (09:28 +0200)]
Incremented vv MINOR VERSION for release
Simon Rit [Mon, 2 May 2011 07:12:43 +0000 (09:12 +0200)]
The absence of libstatgrab is now insensitive
Simon Rit [Mon, 2 May 2011 07:11:49 +0000 (09:11 +0200)]
Added .mha in file types managed by vv
Romulo Pinho [Fri, 29 Apr 2011 13:57:30 +0000 (15:57 +0200)]
removed license header from LICENCE.txt file
Romulo Pinho [Fri, 29 Apr 2011 07:50:44 +0000 (09:50 +0200)]
just removing debugging messages
Romulo Pinho [Fri, 29 Apr 2011 07:38:52 +0000 (09:38 +0200)]
Solved bug 363 (still to be improved, though)
- indeed a z-buffer issue (order of painting)
- actors' positions were being chosen wrt to pixel coordinates, instead of world coordinates
- image actors apparently don't can be directly overlaid on top of each other (no positioning issue)
- VF actor is placed right before or after the start of the image actor's bounding box, depending on the position of the camera
- Clipping box of landmarks has also been corrected
- This solution seems to work robustly, but we never know... ;-)
- Will improve VF by using a vtkSlicer object to interpolate between slices
Simon Rit [Tue, 26 Apr 2011 12:40:49 +0000 (14:40 +0200)]
Init IO factories
Simon Rit [Tue, 26 Apr 2011 10:52:12 +0000 (12:52 +0200)]
Corrected GetScalarComponentAsDouble and displayed pixel coordinates in
corner.
Simon Rit [Mon, 25 Apr 2011 16:01:44 +0000 (18:01 +0200)]
Fixed order problem in condition for analyze orientation handling.
Simon Rit [Mon, 25 Apr 2011 15:01:41 +0000 (17:01 +0200)]
Set mode of regular files to non-executable (644) instead of executable (755)
Simon Rit [Fri, 22 Apr 2011 15:00:20 +0000 (17:00 +0200)]
Detect analyze unkown orientation and set identity instead of something
else
Vivien Delmon [Fri, 22 Apr 2011 13:27:02 +0000 (15:27 +0200)]
gcc 4.6 compatibility:
* ptrdiff_t is in the std namespace
Vivien Delmon [Fri, 22 Apr 2011 13:23:33 +0000 (15:23 +0200)]
gcc 4.6 compatibility:
* ptrdiff_t is in the std namespace
Vivien Delmon [Fri, 22 Apr 2011 13:08:36 +0000 (15:08 +0200)]
itk4 migration:
* Add SetDirectionCollapseToSubmatrix() to extractFilter
Vivien Delmon [Thu, 21 Apr 2011 13:51:46 +0000 (15:51 +0200)]
Bug: debugging code not totally commented
Comment debugging that leads to segfault when no mask is used with
generic metric.
Simon Rit [Thu, 21 Apr 2011 12:49:05 +0000 (14:49 +0200)]
Merge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3
Simon Rit [Thu, 21 Apr 2011 12:46:55 +0000 (14:46 +0200)]
Corrected displayed value at crosshair in overlay and fusion
Simon Rit [Thu, 21 Apr 2011 12:35:56 +0000 (14:35 +0200)]
Display nan instead of no value in overlay and fusion when outside fov
Simon Rit [Thu, 21 Apr 2011 12:34:11 +0000 (14:34 +0200)]
Use nan of std lib instead of sqrt(-1)
dsarrut [Thu, 21 Apr 2011 07:31:20 +0000 (09:31 +0200)]
comment test tools
dsarrut [Thu, 21 Apr 2011 07:24:41 +0000 (09:24 +0200)]
remove untracked file
dsarrut [Thu, 21 Apr 2011 07:12:46 +0000 (09:12 +0200)]
ignore files
dsarrut [Thu, 21 Apr 2011 07:12:34 +0000 (09:12 +0200)]
ignore files
dsarrut [Thu, 21 Apr 2011 07:09:16 +0000 (09:09 +0200)]
add SetRadius with a single int (isotropic)
dsarrut [Thu, 21 Apr 2011 07:03:46 +0000 (09:03 +0200)]
correct CLB URL
dsarrut [Thu, 21 Apr 2011 07:01:29 +0000 (09:01 +0200)]
correct CLB URL
dsarrut [Thu, 21 Apr 2011 05:05:39 +0000 (07:05 +0200)]
merge cvs -> git
dsarrut [Thu, 21 Apr 2011 05:05:23 +0000 (07:05 +0200)]
merge cvs / git
Vivien Delmon [Wed, 20 Apr 2011 09:37:44 +0000 (11:37 +0200)]
migration gdcm 2.0 clitkDicom2Image
* Remove readDicomHeader from clitkImageCommon which were used only in
clitkDicom2Image tool.
* Make clitkDicom2Image compatible with gdcm 2.0
Vivien Delmon [Wed, 20 Apr 2011 09:34:42 +0000 (11:34 +0200)]
migration gdcm 2.0 Add macro for itkv3 compatibility
* Forgot to include Print on gdcm::File into gdcm 2.0 Macro
Vivien Delmon [Wed, 20 Apr 2011 08:33:11 +0000 (10:33 +0200)]
Ignore _* forlders
Ignore _* folders in which I am used to compile different versions.
Vivien Delmon [Tue, 19 Apr 2011 16:39:54 +0000 (18:39 +0200)]
Merge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3
Vivien Delmon [Tue, 19 Apr 2011 16:34:55 +0000 (18:34 +0200)]
Bug: Forgot Macro for itkv4 specific function
Romulo Pinho [Tue, 19 Apr 2011 15:40:51 +0000 (17:40 +0200)]
added a file with only the license header (test)
Vivien Delmon [Tue, 19 Apr 2011 13:46:25 +0000 (15:46 +0200)]
Merge branch 'master' of /home/romulo/creatis/clitk3-git-shared/clitk3
Vivien Delmon [Tue, 19 Apr 2011 13:39:47 +0000 (15:39 +0200)]
itkv4 migration:
* last changes in vvQDicomSeriesSelector to use a list of gdcm::reader instead
of a list of gdcm::File
Romulo Pinho [Tue, 19 Apr 2011 11:49:01 +0000 (13:49 +0200)]
changes in license header
Update of license text
- new CLB's website
- small type
Inclusion of lincense header wherever necessary
Romulo Pinho [Tue, 19 Apr 2011 10:31:28 +0000 (12:31 +0200)]
path correction to execute tests
Romulo Pinho [Mon, 18 Apr 2011 15:10:07 +0000 (17:10 +0200)]
compilation of vv and tests
- vv stand-alone compilation
+ some dependencies from tools were not being compiled
- tests path
+ better path resolution
delmon [Fri, 15 Apr 2011 11:15:46 +0000 (11:15 +0000)]
Mathieu Malaterre
gdcm2 migration:
+ vv open Dicom still a segfault when reading spacing
srit [Fri, 15 Apr 2011 08:30:21 +0000 (08:30 +0000)]
Enable interactive display in tool binarize
srit [Fri, 15 Apr 2011 08:29:19 +0000 (08:29 +0000)]
Smart pointer for filter in vv tools
delmon [Thu, 14 Apr 2011 08:25:56 +0000 (08:25 +0000)]
itkv4 migration:
+ Add missing #include<AffineTransform.h>.
delmon [Thu, 14 Apr 2011 08:23:40 +0000 (08:23 +0000)]
itkv4 migration:
+ itk::OStringStream disappeared, use std::ostringstream instead.
delmon [Thu, 14 Apr 2011 08:22:02 +0000 (08:22 +0000)]
itkv4 migration:
+ itk::BSplineTransform::GetCoefficientImage prototype changed, returning an
array of images instead of a pointer to an image. (c-like table to itk::Array)
delmon [Thu, 14 Apr 2011 08:19:24 +0000 (08:19 +0000)]
itkv4 migration:
+ itk::Math::Round and itk::Math::Ceil need an explicit template when
used.
delmon [Thu, 14 Apr 2011 08:15:32 +0000 (08:15 +0000)]
itkv4 migration:
+ Some methods of itk::Transform are now virtual pure and need to be defined
in any class that inherits from it.
delmon [Thu, 14 Apr 2011 08:12:41 +0000 (08:12 +0000)]
itkv4 migration:
+ itk::ImageIOFactory seems to work differently and does not need to
RegisterBuiltInFactories any more.
delmon [Thu, 14 Apr 2011 08:10:30 +0000 (08:10 +0000)]
itkv4 migration:
+ ITKIO ITKStatistics ITKNumerics etc. disappeared and are replaced by
${ITK_LIBRARIES}
srit [Wed, 13 Apr 2011 17:22:40 +0000 (17:22 +0000)]
Adapt vvSlicer to vvImage without vtkImageReslice. Now reslice according to the image grid in the slice direction. The transform for the vector field has been disabled for the time being.
srit [Wed, 13 Apr 2011 17:16:36 +0000 (17:16 +0000)]
Remove reslice from vvImage. The transform is kept but it's up to the user to use it...
srit [Tue, 12 Apr 2011 14:27:53 +0000 (14:27 +0000)]
Use vvImageReader and vvImageWriter instead of static cast to short.
bouilhol [Tue, 12 Apr 2011 13:42:44 +0000 (13:42 +0000)]
*** empty log message ***
srit [Tue, 12 Apr 2011 12:11:35 +0000 (12:11 +0000)]
Refactored UpdateDisplayExtent. Use larger spacing between actors to overcome differences in resolution between mImage, mFusion and mOverlay.
bouilhol [Tue, 12 Apr 2011 11:52:57 +0000 (11:52 +0000)]
*** empty log message ***
dsarrut [Tue, 12 Apr 2011 11:49:19 +0000 (11:49 +0000)]
Romulo:
- Changed CMakeLists.txt for tests
+ $CLITKDIR/tests mirrors $CLITKDIR, but contains only test code
+ CLITK_DATA_PATH must be specified if BUILD_TESTING is on
* test code can directly access the variable (macro)
+ Test executables generated in $CLITKDIR/build/tests/bin
delmon [Tue, 12 Apr 2011 08:32:06 +0000 (08:32 +0000)]
Protect vtkMPEG2Writer.h which is not anymore in vtk's includes if vtk is not
compile with VTK_USE_MPEG2_ENCODER.
srit [Tue, 12 Apr 2011 08:29:59 +0000 (08:29 +0000)]
First doxygen support with option BUILD_DOXYGEN in cmake and "make Documentation".
dsarrut [Mon, 11 Apr 2011 16:48:46 +0000 (16:48 +0000)]
Romulo:
- 1st version of the LineProfile tool
+ clitkLineProfile -i IMAGE --p0 POINT --p1 POINT
+ POINT can, in principle, be in 2D or 3D, but must match the image dimension (needs testing still)
+ output to std out
* [INDEX] VALUE
* index is comma separated list of coordinates
srit [Mon, 11 Apr 2011 09:54:16 +0000 (09:54 +0000)]
Moved vvImageReader and vvImageWriter to clitkCommon for use in tools. Removed vvConstants.h, the typedef is now in vvImageReader. Made vvImageReader Qt independent since the inheritance of QThread did not seem useful.
delmon [Fri, 8 Apr 2011 11:51:17 +0000 (11:51 +0000)]
Remove files generated by CMake
bouilhol [Thu, 7 Apr 2011 18:18:04 +0000 (18:18 +0000)]
*** empty log message ***