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Creatis software - clitk.git/log
David Sarrut [Wed, 12 Dec 2012 07:13:32 +0000 (08:13 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 6 Dec 2012 13:06:02 +0000 (14:06 +0100)]
added --landmarks to vv's help message
- we can generate a new release now...
Romulo Pinho [Thu, 6 Dec 2012 13:02:11 +0000 (14:02 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 6 Dec 2012 13:01:31 +0000 (14:01 +0100)]
added new cmd line option: --landmarks
- guess what it does...
Romulo Pinho [Thu, 6 Dec 2012 12:35:17 +0000 (13:35 +0100)]
added support to new landmark-file type
- .pts from Jef's studies
David Sarrut [Tue, 27 Nov 2012 15:21:04 +0000 (16:21 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 26 Nov 2012 06:46:09 +0000 (07:46 +0100)]
SliceBySlice filter for uchar
David Sarrut [Mon, 26 Nov 2012 06:45:18 +0000 (07:45 +0100)]
Try to precompile segmentation filter with uchar (faster compil)
Simon Rit [Fri, 23 Nov 2012 11:09:45 +0000 (12:09 +0100)]
Remove check on image information when loading merged image with time
from GUI to be consistent with command line. Since we are reslicing
anyway, there is no need to have similar info anymore.
Vivien Delmon [Wed, 21 Nov 2012 08:41:45 +0000 (09:41 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 20 Nov 2012 16:30:21 +0000 (17:30 +0100)]
Added ImagX file format from RTK
Vivien Delmon [Mon, 19 Nov 2012 11:02:48 +0000 (12:02 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 15 Nov 2012 09:03:49 +0000 (10:03 +0100)]
Handling SYSTEM GDCM build and install trees (correction)
Romulo Pinho [Thu, 15 Nov 2012 08:50:48 +0000 (09:50 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 15 Nov 2012 08:30:11 +0000 (09:30 +0100)]
ITK4 compatibility
Romulo Pinho [Thu, 15 Nov 2012 08:29:27 +0000 (09:29 +0100)]
handling SYSTEM_GDCM from build and install trees
Simon Rit [Tue, 13 Nov 2012 17:42:59 +0000 (18:42 +0100)]
Added support for ESRF reconstructions
Simon Rit [Tue, 13 Nov 2012 17:21:13 +0000 (18:21 +0100)]
Copied ESRF Edf processing from rtk and use rtk file names to emphasize that they are comming from rtk.
Simon Rit [Tue, 13 Nov 2012 16:30:43 +0000 (17:30 +0100)]
Copied His processing from rtk and use rtk file names to emphasize that they are comming from rtk.
Simon Rit [Tue, 13 Nov 2012 16:27:35 +0000 (17:27 +0100)]
Copied Hnd processing from rtk and use rtk file names to emphasize that they are comming from rtk.
Romulo Pinho [Fri, 9 Nov 2012 10:28:14 +0000 (11:28 +0100)]
added support for more VF file types
Simon Rit [Fri, 9 Nov 2012 10:15:39 +0000 (11:15 +0100)]
Removed git tag on VV to compile HEAD
Romulo Pinho [Thu, 8 Nov 2012 08:27:00 +0000 (09:27 +0100)]
compilation issues
- simplification of RPATH assignment when make-installing
- handling the use of ITK with USE_SYSTEM_GDCM
David Sarrut [Tue, 6 Nov 2012 09:32:24 +0000 (10:32 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 6 Nov 2012 09:23:38 +0000 (10:23 +0100)]
Add option to detect too small segmented structures
David Sarrut [Tue, 6 Nov 2012 09:22:53 +0000 (10:22 +0100)]
Add option to detect too small segmented structures
Romulo Pinho [Mon, 5 Nov 2012 16:44:14 +0000 (17:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 5 Nov 2012 16:42:12 +0000 (17:42 +0100)]
correctly reading contour colours for GDCM 2.x
Romulo Pinho [Mon, 5 Nov 2012 09:18:57 +0000 (10:18 +0100)]
adjusting dependencies
David Sarrut [Fri, 2 Nov 2012 19:35:17 +0000 (12:35 -0700)]
Sorry I push the wrong file
David Sarrut [Fri, 2 Nov 2012 19:25:11 +0000 (12:25 -0700)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
vv/vvMainWindow.cxx
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add nii.gz as file extension
Vivien Delmon [Wed, 31 Oct 2012 10:11:10 +0000 (11:11 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 30 Oct 2012 10:57:16 +0000 (11:57 +0100)]
Added svl file format (Clarity)
Benoît Presles [Tue, 30 Oct 2012 10:53:35 +0000 (11:53 +0100)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Simon Rit [Tue, 30 Oct 2012 10:50:05 +0000 (11:50 +0100)]
Fixed slice error: check that it is in extent before updating extents
David Sarrut [Mon, 29 Oct 2012 15:45:31 +0000 (16:45 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 25 Oct 2012 10:03:21 +0000 (12:03 +0200)]
bug removal
- correcting iterator regions
Romulo Pinho [Wed, 24 Oct 2012 20:50:13 +0000 (22:50 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 24 Oct 2012 20:49:22 +0000 (22:49 +0200)]
bug removal
- was accessing pixel neighbours outside the image buffer...
Benoît Presles [Wed, 24 Oct 2012 11:20:16 +0000 (13:20 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Wed, 24 Oct 2012 11:18:32 +0000 (13:18 +0200)]
updated the render window for the labeled landmarks
Simon Rit [Wed, 24 Oct 2012 07:08:23 +0000 (09:08 +0200)]
No typename outside template (MSVC sensitive)
Benoît Presles [Tue, 23 Oct 2012 17:40:55 +0000 (19:40 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Tue, 23 Oct 2012 17:02:58 +0000 (19:02 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Tue, 23 Oct 2012 17:01:59 +0000 (19:01 +0200)]
added labels to landmarks
Simon Rit [Tue, 23 Oct 2012 16:56:26 +0000 (18:56 +0200)]
Clean-up while debugging
Vivien Delmon [Tue, 23 Oct 2012 12:28:14 +0000 (14:28 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 23 Oct 2012 09:51:00 +0000 (11:51 +0200)]
further changes to solve bug #1714
Vivien Delmon [Mon, 22 Oct 2012 14:27:36 +0000 (16:27 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 22 Oct 2012 14:26:37 +0000 (16:26 +0200)]
BUG: Problem with absolute paths
David Sarrut [Mon, 22 Oct 2012 13:29:26 +0000 (15:29 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Mon, 22 Oct 2012 13:27:26 +0000 (15:27 +0200)]
Fix for Bug #1714: only check on sliders of the visible vvSlicer.
Vivien Delmon [Mon, 22 Oct 2012 10:54:39 +0000 (12:54 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 19 Oct 2012 09:52:27 +0000 (11:52 +0200)]
VV: added links to Read/Save state
David Sarrut [Fri, 19 Oct 2012 07:41:26 +0000 (09:41 +0200)]
Change comment for buggy part
David Sarrut [Fri, 19 Oct 2012 07:40:05 +0000 (09:40 +0200)]
Default opacity is now 0.5
David Sarrut [Fri, 19 Oct 2012 07:39:40 +0000 (09:39 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 18 Oct 2012 08:07:56 +0000 (10:07 +0200)]
vv: corrected tree column updates when maximizing view
David Sarrut [Thu, 18 Oct 2012 07:57:48 +0000 (09:57 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 18 Oct 2012 07:37:37 +0000 (09:37 +0200)]
VV panning: middlebutton = left button + shift
- a change made specially for mac owners and their mice-without-middle-button issues... ;-)
Romulo Pinho [Thu, 18 Oct 2012 07:07:30 +0000 (09:07 +0200)]
updated help message concerning window/level cmd line option
David Sarrut [Wed, 17 Oct 2012 10:55:39 +0000 (12:55 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
vv/vv.cxx
vv/vvSlicerManager.cxx
vv/vvSlicerManagerCommand.cxx
David Sarrut [Wed, 17 Oct 2012 10:48:34 +0000 (12:48 +0200)]
Add option to detect too small CCL (stomach)
Romulo Pinho [Wed, 17 Oct 2012 10:41:40 +0000 (12:41 +0200)]
window/level in read/save state
Romulo Pinho [Wed, 17 Oct 2012 09:39:56 +0000 (11:39 +0200)]
accepts multiple window/level in cmd-line
- window/level is applied to set of images (sequences too) appearing before the window/level
- useful when opening, eg, different modalities at the same time
Romulo Pinho [Tue, 16 Oct 2012 21:18:37 +0000 (23:18 +0200)]
preserve crosshair position when changing orientation
- it used to jump to the slice in the middle of the volume
Romulo Pinho [Tue, 16 Oct 2012 14:40:04 +0000 (16:40 +0200)]
maximizes the selected slicer
- before it was just the NW one.
Romulo Pinho [Mon, 15 Oct 2012 08:44:25 +0000 (10:44 +0200)]
gdcm 1.X compatibility
Vivien Delmon [Wed, 10 Oct 2012 09:33:17 +0000 (11:33 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 10 Oct 2012 08:26:39 +0000 (10:26 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
vv/vv.cxx
Vivien Delmon [Mon, 8 Oct 2012 09:53:57 +0000 (11:53 +0200)]
Remove warning.
Missing a return true.
Simon Rit [Wed, 3 Oct 2012 08:16:16 +0000 (10:16 +0200)]
Fix for MSVC CPack
Simon Rit [Mon, 1 Oct 2012 14:56:38 +0000 (16:56 +0200)]
Various fixes
Simon Rit [Mon, 1 Oct 2012 14:52:21 +0000 (16:52 +0200)]
Updated version for new release
Simon Rit [Mon, 1 Oct 2012 14:44:05 +0000 (16:44 +0200)]
Fix for old versions of gcc
Romulo Pinho [Mon, 1 Oct 2012 13:19:16 +0000 (15:19 +0200)]
corrections post- "-h" addition in VV
Romulo Pinho [Mon, 1 Oct 2012 08:35:37 +0000 (10:35 +0200)]
added "-h" for help option VV
Simon Rit [Fri, 28 Sep 2012 13:04:34 +0000 (15:04 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 28 Sep 2012 13:03:17 +0000 (15:03 +0200)]
Sync gengetopt cmake files with rtk
dbcache [Fri, 28 Sep 2012 11:27:26 +0000 (13:27 +0200)]
use of relative path for default study/series description
Romulo Pinho [Fri, 28 Sep 2012 09:57:47 +0000 (11:57 +0200)]
error in dicom key setting...
Romulo Pinho [Thu, 27 Sep 2012 15:47:59 +0000 (17:47 +0200)]
default values for study's/series' ID, time, date, number, description
dbcache [Thu, 27 Sep 2012 14:55:43 +0000 (16:55 +0200)]
GDCM 1.x compatibility
Romulo Pinho [Thu, 27 Sep 2012 14:10:23 +0000 (16:10 +0200)]
newStudyUID forces newSeriesUID
- also some bug corrections...
dbcache [Thu, 27 Sep 2012 13:17:45 +0000 (15:17 +0200)]
corrections...
dbcache [Thu, 27 Sep 2012 12:43:42 +0000 (14:43 +0200)]
GDCM 1.x compatibility
Romulo Pinho [Thu, 27 Sep 2012 12:41:45 +0000 (14:41 +0200)]
create new files for new dicom study/series
Romulo Pinho [Tue, 25 Sep 2012 16:07:20 +0000 (18:07 +0200)]
auto generate dicom file UIDs when new series/study is specified
Romulo Pinho [Tue, 25 Sep 2012 10:04:40 +0000 (12:04 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 25 Sep 2012 10:03:53 +0000 (12:03 +0200)]
gdcm 1.x compatibility
Simon Rit [Mon, 24 Sep 2012 13:20:30 +0000 (15:20 +0200)]
First version of the superbuild CMakeLists.txt.
Romulo Pinho [Fri, 21 Sep 2012 15:46:20 +0000 (17:46 +0200)]
new options to auto-generate dcm series UIDs
David Sarrut [Wed, 19 Sep 2012 07:01:20 +0000 (09:01 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 18 Sep 2012 08:33:57 +0000 (10:33 +0200)]
Lungs window/level is now the same as in FOCAL
- (1700,-300)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
small cout bug (cast bg to int instead of char)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Cosmetic
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Cosmetic
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Replace floor by rint to correct link error in vv
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add -h option