]> Creatis software - clitk.git/log
clitk.git
14 years agoworks with the new create_mhd_4D.sh
bouilhol [Mon, 22 Nov 2010 17:32:47 +0000 (17:32 +0000)]
works with the new create_mhd_4D.sh

14 years agodon't crash if ther is a "/" in the dicom field
bouilhol [Tue, 9 Nov 2010 13:52:35 +0000 (13:52 +0000)]
don't crash if ther is a "/" in the dicom field

14 years agoclitkDicomToImage added to clitk3
bouilhol [Fri, 5 Nov 2010 00:04:59 +0000 (00:04 +0000)]
clitkDicomToImage added to clitk3

14 years agoCorrected erroneous free when a real RECTILINEAR field is detected
srit [Thu, 4 Nov 2010 18:22:44 +0000 (18:22 +0000)]
Corrected erroneous free when a real RECTILINEAR field is detected

14 years ago*** empty log message ***
bouilhol [Tue, 26 Oct 2010 15:25:44 +0000 (15:25 +0000)]
*** empty log message ***

14 years ago*** empty log message ***
bouilhol [Tue, 26 Oct 2010 14:39:05 +0000 (14:39 +0000)]
*** empty log message ***

14 years agotemporal median of a sequence of images, to be used for the mid P project
schaerer [Tue, 26 Oct 2010 13:43:54 +0000 (13:43 +0000)]
temporal median of a sequence of images, to be used for the mid P project

14 years agoMIP tool using David's framework
schaerer [Tue, 26 Oct 2010 12:37:54 +0000 (12:37 +0000)]
MIP tool using David's framework

14 years agoRemoved warning
srit [Mon, 25 Oct 2010 16:27:49 +0000 (16:27 +0000)]
Removed warning

14 years agoRemoved vc2010 warnings
srit [Mon, 25 Oct 2010 16:21:29 +0000 (16:21 +0000)]
Removed vc2010 warnings

14 years agocli tool for mip computation
schaerer [Mon, 25 Oct 2010 14:34:24 +0000 (14:34 +0000)]
cli tool for mip computation

14 years agoremove useless txx
schaerer [Mon, 25 Oct 2010 13:58:33 +0000 (13:58 +0000)]
remove useless txx

14 years agoRemoved exception handling at a low level, let them be handled at a higher, e.g....
srit [Sun, 24 Oct 2010 18:49:45 +0000 (18:49 +0000)]
Removed exception handling at a low level, let them be handled at a higher, e.g. with qt errors. Only update itk pipeline for reading in vvImage to avoid reading unnecessary parts of the image.

14 years agofix warning
schaerer [Sun, 24 Oct 2010 10:22:11 +0000 (10:22 +0000)]
fix warning

14 years agoMS compiler compatibility issues
srit [Fri, 22 Oct 2010 16:06:20 +0000 (16:06 +0000)]
MS compiler compatibility issues

14 years agomake difference between 2D and 3D with a single slice image (Dim obtained from ITK...
dsarrut [Fri, 22 Oct 2010 08:40:20 +0000 (08:40 +0000)]
make difference between 2D and 3D with a single slice image (Dim obtained from ITK reader)

14 years agoDB of anatomical features
dsarrut [Fri, 22 Oct 2010 07:56:30 +0000 (07:56 +0000)]
DB of anatomical features

14 years agonew FillMask with itk filter
dsarrut [Fri, 22 Oct 2010 07:56:13 +0000 (07:56 +0000)]
new FillMask with itk filter

14 years agodummy ui
dsarrut [Fri, 22 Oct 2010 07:43:56 +0000 (07:43 +0000)]
dummy ui

14 years agoadd slider for temporal dim (not used)
dsarrut [Fri, 22 Oct 2010 07:42:49 +0000 (07:42 +0000)]
add slider for temporal dim (not used)

14 years agocompile all tools
dsarrut [Fri, 22 Oct 2010 07:42:20 +0000 (07:42 +0000)]
compile all tools

14 years agoremove debug
dsarrut [Fri, 22 Oct 2010 07:40:34 +0000 (07:40 +0000)]
remove debug

14 years agoauto init args ggo
dsarrut [Fri, 22 Oct 2010 07:40:20 +0000 (07:40 +0000)]
auto init args ggo

14 years agoupdated crop image with itk filter (and no vtk)
dsarrut [Fri, 22 Oct 2010 07:40:04 +0000 (07:40 +0000)]
updated crop image with itk filter (and no vtk)

14 years agocosmetic
dsarrut [Fri, 22 Oct 2010 07:38:05 +0000 (07:38 +0000)]
cosmetic

14 years agosmall improvement
dsarrut [Fri, 22 Oct 2010 07:37:10 +0000 (07:37 +0000)]
small improvement

14 years agonew FillMask with itk filter
dsarrut [Fri, 22 Oct 2010 07:36:34 +0000 (07:36 +0000)]
new FillMask with itk filter

14 years agoremove debug messages
dsarrut [Fri, 22 Oct 2010 07:36:07 +0000 (07:36 +0000)]
remove debug messages

14 years agoadd clitkExceptionMacro
dsarrut [Fri, 22 Oct 2010 07:35:31 +0000 (07:35 +0000)]
add clitkExceptionMacro

14 years agosimplified image pointer (const/non const)
dsarrut [Fri, 22 Oct 2010 07:34:46 +0000 (07:34 +0000)]
simplified image pointer (const/non const)

14 years agonew CropImage with AutoCrop and CropLike
dsarrut [Fri, 22 Oct 2010 07:33:59 +0000 (07:33 +0000)]
new CropImage with AutoCrop and CropLike

14 years agoremove itk:ostringstream dependence
dsarrut [Fri, 22 Oct 2010 07:33:19 +0000 (07:33 +0000)]
remove itk:ostringstream dependence

14 years agocosmetic
dsarrut [Fri, 22 Oct 2010 07:32:54 +0000 (07:32 +0000)]
cosmetic

14 years agomake explicit write/read on disk
dsarrut [Fri, 22 Oct 2010 07:19:27 +0000 (07:19 +0000)]
make explicit write/read on disk

14 years agoremove unused
dsarrut [Fri, 22 Oct 2010 07:19:04 +0000 (07:19 +0000)]
remove unused

14 years agocosmetic
dsarrut [Fri, 22 Oct 2010 07:18:37 +0000 (07:18 +0000)]
cosmetic

14 years agofix warning
schaerer [Thu, 21 Oct 2010 16:02:37 +0000 (16:02 +0000)]
fix warning

14 years agoImplemented alternative to former split: split on open.
srit [Thu, 21 Oct 2010 12:56:57 +0000 (12:56 +0000)]
Implemented alternative to former split: split on open.

14 years agoImplemented new vvImage scheme: the itk to vtk image converter is now kept as a class...
srit [Wed, 20 Oct 2010 15:01:03 +0000 (15:01 +0000)]
Implemented new vvImage scheme: the itk to vtk image converter is now kept as a class member for improved memory handling.

14 years agoRemoved action split image from menu, will be reimplemented as a read option
srit [Wed, 20 Oct 2010 14:59:13 +0000 (14:59 +0000)]
Removed action split image from menu, will be reimplemented as a read option

14 years agoDisable tools crop and rigid registration
srit [Wed, 20 Oct 2010 14:56:47 +0000 (14:56 +0000)]
Disable tools crop and rigid registration

14 years agoitkv4 compatibility
schaerer [Wed, 20 Oct 2010 13:34:18 +0000 (13:34 +0000)]
itkv4 compatibility

14 years agospace-proofness
schaerer [Tue, 19 Oct 2010 13:08:05 +0000 (13:08 +0000)]
space-proofness

14 years agoCorrected use of vtkSmartPointers and mistakes in constructor / destructor
srit [Fri, 15 Oct 2010 15:37:37 +0000 (15:37 +0000)]
Corrected use of vtkSmartPointers and mistakes in constructor / destructor

14 years agoadd clitkCommon.h
dsarrut [Fri, 15 Oct 2010 06:15:46 +0000 (06:15 +0000)]
add clitkCommon.h

14 years ago-add dependencies for all autotools
dsarrut [Fri, 15 Oct 2010 06:15:21 +0000 (06:15 +0000)]
-add dependencies for all autotools

14 years agofix linking problem
schaerer [Thu, 14 Oct 2010 13:33:00 +0000 (13:33 +0000)]
fix linking problem

14 years agochange include (itkMacro) to help compilation with ITK4
dsarrut [Thu, 14 Oct 2010 09:53:54 +0000 (09:53 +0000)]
change include (itkMacro) to help compilation with ITK4

14 years agomechanism for handling tool dependencies in a modular way.
schaerer [Wed, 13 Oct 2010 15:20:04 +0000 (15:20 +0000)]
mechanism for handling tool dependencies in a modular way.

We still need to describe those dependencies more finely

14 years agoseparate tools from the rest
schaerer [Wed, 13 Oct 2010 15:06:56 +0000 (15:06 +0000)]
separate tools from the rest

14 years agoRemoved vtkGridTransform and turned off vtkImageReslice with a define
srit [Tue, 12 Oct 2010 21:30:15 +0000 (21:30 +0000)]
Removed vtkGridTransform and turned off vtkImageReslice with a define

14 years agoadd clitkCommon.h
dsarrut [Mon, 11 Oct 2010 14:55:50 +0000 (14:55 +0000)]
add clitkCommon.h

14 years agolrint is still not portable
srit [Wed, 6 Oct 2010 15:39:21 +0000 (15:39 +0000)]
lrint is still not portable

14 years agoostream does not handle std::string (check http://www.cplusplus.com/reference/iostrea...
srit [Wed, 6 Oct 2010 15:38:45 +0000 (15:38 +0000)]
ostream does not handle std::string (check http://www.cplusplus.com/reference/iostream/ostream/operator%3C%3C/)

14 years agorevived old fast_make script / clean some dependencies
schaerer [Tue, 5 Oct 2010 18:00:15 +0000 (18:00 +0000)]
revived old fast_make script / clean some dependencies

14 years agoremove unused file
schaerer [Tue, 5 Oct 2010 14:17:13 +0000 (14:17 +0000)]
remove unused file

14 years agocreate clitkDD.h to avoid the heavy dependency on clitkCommon.h only for DD
schaerer [Tue, 5 Oct 2010 14:16:36 +0000 (14:16 +0000)]
create clitkDD.h to avoid the heavy dependency on clitkCommon.h only for DD

14 years agoallow the user to chose the axis along which to compute the mip
schaerer [Tue, 5 Oct 2010 13:26:37 +0000 (13:26 +0000)]
allow the user to chose the axis along which to compute the mip

14 years agomove clitkConfiguration.h out of clitkCommon to avoid costly recompilations
schaerer [Tue, 5 Oct 2010 13:01:03 +0000 (13:01 +0000)]
move clitkConfiguration.h out of clitkCommon to avoid costly recompilations
fix harmless warning

14 years ago- remove unuseful file
dsarrut [Tue, 5 Oct 2010 12:27:57 +0000 (12:27 +0000)]
- remove unuseful file

14 years ago*** empty log message ***
dsarrut [Tue, 5 Oct 2010 09:31:39 +0000 (09:31 +0000)]
*** empty log message ***

14 years agonew Airway filter (experimental)
dsarrut [Tue, 5 Oct 2010 09:31:29 +0000 (09:31 +0000)]
new Airway filter (experimental)

14 years agoseparate airway tracking from extract lung
dsarrut [Tue, 5 Oct 2010 09:31:03 +0000 (09:31 +0000)]
separate airway tracking from extract lung

14 years agoremove debug DD
dsarrut [Tue, 5 Oct 2010 09:30:30 +0000 (09:30 +0000)]
remove debug DD

14 years agocorrect bug (copy message)
dsarrut [Tue, 5 Oct 2010 09:30:11 +0000 (09:30 +0000)]
correct bug (copy message)

14 years agodocumentation for tree.hh
dsarrut [Mon, 4 Oct 2010 08:06:30 +0000 (08:06 +0000)]
documentation for tree.hh

14 years agomanage tree structures
dsarrut [Mon, 4 Oct 2010 08:06:16 +0000 (08:06 +0000)]
manage tree structures

14 years agomanage anatomical features DB
dsarrut [Mon, 4 Oct 2010 08:05:25 +0000 (08:05 +0000)]
manage anatomical features DB

14 years agoerror are now handled by exception
dsarrut [Mon, 4 Oct 2010 08:04:16 +0000 (08:04 +0000)]
error are now handled by exception

14 years agoadd Anatomical DB to library
dsarrut [Mon, 4 Oct 2010 08:03:34 +0000 (08:03 +0000)]
add Anatomical DB to library

14 years agonow dump anatomical info (carina position) into a DB
dsarrut [Mon, 4 Oct 2010 08:03:04 +0000 (08:03 +0000)]
now dump anatomical info (carina position) into a DB

14 years agoread carina position into DB
dsarrut [Mon, 4 Oct 2010 07:54:45 +0000 (07:54 +0000)]
read carina position into DB

14 years agoadd lower limits for lung (experimental)
dsarrut [Mon, 4 Oct 2010 07:54:23 +0000 (07:54 +0000)]
add lower limits for lung (experimental)

14 years agonow dump anatomical info (carina position) into a DB
dsarrut [Mon, 4 Oct 2010 07:52:56 +0000 (07:52 +0000)]
now dump anatomical info (carina position) into a DB

14 years agoadd anatomical feature DB capability to a filter
dsarrut [Mon, 4 Oct 2010 07:51:58 +0000 (07:51 +0000)]
add anatomical feature DB capability to a filter

14 years agoremove debug code
dsarrut [Mon, 4 Oct 2010 07:49:21 +0000 (07:49 +0000)]
remove debug code

14 years agoadd "get number of connected components" function
dsarrut [Mon, 4 Oct 2010 07:48:42 +0000 (07:48 +0000)]
add "get number of connected components" function

14 years agoadd exception file
dsarrut [Mon, 4 Oct 2010 07:47:46 +0000 (07:47 +0000)]
add exception file

14 years agoerror are now handled by exception
dsarrut [Mon, 4 Oct 2010 07:46:52 +0000 (07:46 +0000)]
error are now handled by exception

14 years agoException for error management
dsarrut [Mon, 4 Oct 2010 07:46:34 +0000 (07:46 +0000)]
Exception for error management

14 years agochanges for CTest
schaerer [Tue, 28 Sep 2010 11:23:12 +0000 (11:23 +0000)]
changes for CTest

14 years agoSkip last level corrections
srit [Wed, 22 Sep 2010 09:10:24 +0000 (09:10 +0000)]
Skip last level corrections

14 years ago add skipLastPyramidLevel option
dsarrut [Wed, 22 Sep 2010 03:23:29 +0000 (03:23 +0000)]
 add skipLastPyramidLevel option

14 years agoRemoved unused txx file
srit [Tue, 21 Sep 2010 10:33:46 +0000 (10:33 +0000)]
Removed unused txx file

14 years ago*** empty log message ***
grevillot [Tue, 21 Sep 2010 09:37:33 +0000 (09:37 +0000)]
*** empty log message ***

14 years agoFusion window / level was rounded to int for no good reason
srit [Thu, 16 Sep 2010 15:53:54 +0000 (15:53 +0000)]
Fusion window / level was rounded to int for no good reason

14 years agoFusion windows level is now 4 decimals
srit [Thu, 16 Sep 2010 15:53:15 +0000 (15:53 +0000)]
Fusion windows level is now 4 decimals

14 years agoAttempt to solve Kumar's issue
srit [Thu, 16 Sep 2010 15:51:10 +0000 (15:51 +0000)]
Attempt to solve Kumar's issue

14 years agoReformat with astyle, Kumar had to convert it to dos style
srit [Thu, 16 Sep 2010 15:47:28 +0000 (15:47 +0000)]
Reformat with astyle, Kumar had to convert it to dos style

14 years agoProblem with slot in previous commit. Corrected based on overlay example
srit [Thu, 16 Sep 2010 13:45:42 +0000 (13:45 +0000)]
Problem with slot in previous commit. Corrected based on overlay example

14 years agoParsing fusion image from command line
srit [Thu, 16 Sep 2010 13:29:04 +0000 (13:29 +0000)]
Parsing fusion image from command line

14 years agoChanged headers
srit [Thu, 16 Sep 2010 12:37:34 +0000 (12:37 +0000)]
Changed headers

14 years agoModified padding for empire
srit [Thu, 16 Sep 2010 10:45:45 +0000 (10:45 +0000)]
Modified padding for empire

14 years agosupport for spaces in file names
schaerer [Thu, 16 Sep 2010 08:38:15 +0000 (08:38 +0000)]
support for spaces in file names

14 years agoDo pad before connecting components
srit [Wed, 15 Sep 2010 14:51:26 +0000 (14:51 +0000)]
Do pad before connecting components

14 years agoThere were some f***** differences between clitk2 and clitk3 in the BLUT. Tried to...
srit [Wed, 15 Sep 2010 08:16:51 +0000 (08:16 +0000)]
There were some f***** differences between clitk2 and clitk3 in the BLUT. Tried to take clitk2 version which is more recent according to cvs. They don't look big but they have an effect. Please check!

14 years agoRemoved unrequired library linking
srit [Mon, 13 Sep 2010 16:40:00 +0000 (16:40 +0000)]
Removed unrequired library linking

14 years agoa hopefully better option parser for vv
schaerer [Fri, 10 Sep 2010 12:51:37 +0000 (12:51 +0000)]
a hopefully better option parser for vv

14 years agoTry to adapt the filter to Jef's clitk2 solution.
srit [Fri, 10 Sep 2010 12:38:23 +0000 (12:38 +0000)]
Try to adapt the filter to Jef's clitk2 solution.

14 years agosupport for the precise flexmap
schaerer [Thu, 9 Sep 2010 15:32:19 +0000 (15:32 +0000)]
support for the precise flexmap