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Creatis software - clitk.git/log
Romulo Pinho [Mon, 18 Jul 2011 14:42:15 +0000 (16:42 +0200)]
compilation of clitkPadImage
Romulo Pinho [Mon, 18 Jul 2011 14:38:37 +0000 (16:38 +0200)]
clitkExtractPatient's memory use...
...has been improved by releasing intermediate image data
- special cases may still use a lot of memory, but this is an ITK issue
Romulo Pinho [Mon, 18 Jul 2011 12:16:04 +0000 (14:16 +0200)]
fine tuning clitkPadImage
Romulo Pinho [Mon, 18 Jul 2011 11:41:15 +0000 (13:41 +0200)]
corrections in padding tool
dsarrut [Tue, 12 Jul 2011 06:16:48 +0000 (08:16 +0200)]
add final opening
dsarrut [Tue, 12 Jul 2011 06:14:58 +0000 (08:14 +0200)]
Add initial step: select BB supports.
dsarrut [Tue, 12 Jul 2011 06:14:17 +0000 (08:14 +0200)]
Add clitkAnd, SliceBySliceSetBackgroundFromSingleLine, FillRegionWithValue
dsarrut [Tue, 12 Jul 2011 06:14:10 +0000 (08:14 +0200)]
Add clitkAnd, SliceBySliceSetBackgroundFromSingleLine, FillRegionWithValue
dsarrut [Tue, 12 Jul 2011 06:13:24 +0000 (08:13 +0200)]
Add post limits with VertebralBody and ant limits with Sternum.
dsarrut [Tue, 12 Jul 2011 06:12:47 +0000 (08:12 +0200)]
add final opening
dsarrut [Tue, 12 Jul 2011 06:12:39 +0000 (08:12 +0200)]
add final opening
dsarrut [Tue, 12 Jul 2011 06:12:20 +0000 (08:12 +0200)]
Add final open
dsarrut [Tue, 12 Jul 2011 06:11:29 +0000 (08:11 +0200)]
Add initialisation to avoid warning
dsarrut [Tue, 12 Jul 2011 06:11:14 +0000 (08:11 +0200)]
Change default (bug): CCLSelection is off by default (we do not consider a single Connected Component Label in the object)
dsarrut [Tue, 12 Jul 2011 06:10:21 +0000 (08:10 +0200)]
Correct bug: when crop is only performed along a single direction.
dsarrut [Tue, 12 Jul 2011 06:09:20 +0000 (08:09 +0200)]
add initialisation to avoid warning
mpech [Fri, 8 Jul 2011 12:22:58 +0000 (14:22 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Conflicts:
tests/tools/CMakeLists.txt
mpech [Fri, 8 Jul 2011 12:19:23 +0000 (14:19 +0200)]
tests for clitkGet*
mpech [Fri, 8 Jul 2011 12:06:21 +0000 (14:06 +0200)]
update of TOOLS_PATH in tests
mpech [Fri, 8 Jul 2011 11:13:31 +0000 (13:13 +0200)]
tests for getSpacing and getInfo
mpech [Fri, 8 Jul 2011 10:51:44 +0000 (12:51 +0200)]
getSpacing
Simon Rit [Thu, 7 Jul 2011 13:03:26 +0000 (15:03 +0200)]
Added FindGengetopt.cmake which compiles gengetopt if not installed.
Also upgraded cmake version required to 2.8 because was solving issues
regarding ADD_DEFINITION with quoted strings
Simon Rit [Thu, 7 Jul 2011 13:02:04 +0000 (15:02 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Thu, 7 Jul 2011 11:27:07 +0000 (13:27 +0200)]
Padding tool
Simon Rit [Wed, 6 Jul 2011 11:39:26 +0000 (13:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Wed, 6 Jul 2011 11:35:37 +0000 (13:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Wed, 6 Jul 2011 11:27:26 +0000 (13:27 +0200)]
optional opening after 1st step in ExtractPatient
- controlled by the radius given on the cmd line
mpech [Wed, 6 Jul 2011 09:43:25 +0000 (11:43 +0200)]
macro for SET_IF_NOT_SET
mpech [Wed, 6 Jul 2011 09:05:29 +0000 (11:05 +0200)]
Allow submit to other dashboard than vv's dashboard
mpech [Fri, 1 Jul 2011 13:30:24 +0000 (15:30 +0200)]
clitkImageInfo tests
mpech [Fri, 1 Jul 2011 10:53:57 +0000 (12:53 +0200)]
obsolete dartConfig file
mpech [Wed, 29 Jun 2011 16:02:26 +0000 (18:02 +0200)]
renaming clitk_data_path in clitk_test_data_path
"factorizing" git repo in CTestConfig
mpech [Wed, 29 Jun 2011 15:29:36 +0000 (17:29 +0200)]
publishing to vv's dashboard
mpech [Wed, 29 Jun 2011 12:00:19 +0000 (14:00 +0200)]
testing with a simple executable
mpech [Wed, 29 Jun 2011 11:58:55 +0000 (13:58 +0200)]
fetch data pull or clone
mpech [Wed, 29 Jun 2011 11:34:41 +0000 (13:34 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
mpech [Wed, 29 Jun 2011 11:32:57 +0000 (13:32 +0200)]
scripts to pull data
todo : pull instead of clone if it already exists
mpech [Wed, 29 Jun 2011 11:31:10 +0000 (13:31 +0200)]
Modification for nightly builds
Simon Rit [Wed, 29 Jun 2011 10:00:39 +0000 (12:00 +0200)]
Added mha next to mhd (similar but in one file)
Simon Rit [Tue, 28 Jun 2011 07:41:19 +0000 (09:41 +0200)]
Minor gui text corrections
Simon Rit [Mon, 27 Jun 2011 16:53:16 +0000 (18:53 +0200)]
transform_grid option was not working for flips
Simon Rit [Mon, 27 Jun 2011 11:11:47 +0000 (13:11 +0200)]
Fix for bug Bug #670: closing and opening do the same as successive
erosion/dilation
Simon Rit [Mon, 27 Jun 2011 09:48:47 +0000 (11:48 +0200)]
Removed call to UpdateOrientation in SetFusion and SetOverlay to avoid
changing slice when reloading.
Simon Rit [Mon, 27 Jun 2011 08:02:22 +0000 (10:02 +0200)]
No need for typename outside template declarations (compiling error on
msvc++)
Simon Rit [Mon, 27 Jun 2011 08:01:30 +0000 (10:01 +0200)]
Allowed arithmetic operations between 2 inputs even if they don't have the same spacing.
Simon Rit [Mon, 27 Jun 2011 08:00:25 +0000 (10:00 +0200)]
Added HaveSameSize
Simon Rit [Thu, 23 Jun 2011 17:46:07 +0000 (19:46 +0200)]
Portability issue
Simon Rit [Thu, 23 Jun 2011 17:44:22 +0000 (19:44 +0200)]
Added --transform_grid which uses input->GetDirection
(output->GetDirection is identity) and transform matrix
to determine the output grid.
Simon Rit [Thu, 23 Jun 2011 17:41:53 +0000 (19:41 +0200)]
Inverse transform matrix to be consistent witk ITK (see longer comment in vvImageReader.cxx)
Simon Rit [Thu, 23 Jun 2011 11:16:58 +0000 (13:16 +0200)]
Account for itk origin when using itk direction to build vv transform
Simon Rit [Wed, 22 Jun 2011 08:35:11 +0000 (10:35 +0200)]
Added ExtractBonesLower2 and FillingLevel options
Simon Rit [Wed, 22 Jun 2011 08:33:44 +0000 (10:33 +0200)]
Copy pasted common.sh code
Romulo Pinho [Tue, 21 Jun 2011 18:12:50 +0000 (20:12 +0200)]
simple tool to create an image with a sphere
- still to be improved
Romulo Pinho [Tue, 21 Jun 2011 18:10:28 +0000 (20:10 +0200)]
jacobian image filter
- calculate the jacobian of a vector field
Romulo Pinho [Tue, 21 Jun 2011 14:00:31 +0000 (16:00 +0200)]
moved $CLITK3/vv/scripts to $CLITK3/scripts
- added create_midP_masks.sh
mpech [Mon, 20 Jun 2011 13:30:43 +0000 (15:30 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
mpech [Mon, 20 Jun 2011 13:29:07 +0000 (15:29 +0200)]
use of find_xxx to find googleframework and data paths
Simon Rit [Mon, 20 Jun 2011 08:48:47 +0000 (10:48 +0200)]
Missing include
Simon Rit [Sat, 18 Jun 2011 16:21:53 +0000 (18:21 +0200)]
uint is not a type
Simon Rit [Sat, 18 Jun 2011 16:07:14 +0000 (18:07 +0200)]
Fix for bug #274: move ExtractSlices definition in .h
Simon Rit [Fri, 17 Jun 2011 16:53:45 +0000 (18:53 +0200)]
Oups, wrong exception message
Simon Rit [Fri, 17 Jun 2011 16:40:45 +0000 (18:40 +0200)]
Resample is not robust to i/o spacings with different signs => launch
exception
Simon Rit [Thu, 16 Jun 2011 15:13:33 +0000 (17:13 +0200)]
The order of the libraries seemed to cause problem. Changed it...
Vivien Delmon [Thu, 16 Jun 2011 09:50:44 +0000 (11:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Thu, 16 Jun 2011 09:48:39 +0000 (11:48 +0200)]
Use Qt variables in vv/CMakeList.txt
Use ${QT_QTNETWORK_LIBRARY} instead of QtNetwork that didn't worked with
window Qt library named QtNetwork4.lib
Romulo Pinho [Wed, 15 Jun 2011 15:11:07 +0000 (17:11 +0200)]
orientation change should not change T slice
- time never changes when just the image orientation is changed...
Simon Rit [Wed, 15 Jun 2011 10:43:05 +0000 (12:43 +0200)]
Fix for bug #609
Simon Rit [Wed, 15 Jun 2011 08:48:08 +0000 (10:48 +0200)]
Change key for going to coordinate system origin. Now CTRL+g
Simon Rit [Wed, 15 Jun 2011 08:47:36 +0000 (10:47 +0200)]
Removed unused text variable
Simon Rit [Tue, 14 Jun 2011 13:36:30 +0000 (15:36 +0200)]
QtNetwork is a required dependency of vvRegisterForm
mpech [Tue, 14 Jun 2011 11:46:49 +0000 (13:46 +0200)]
Obsolete header replaced with correct header
mpech [Tue, 14 Jun 2011 11:27:45 +0000 (13:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
mpech [Tue, 14 Jun 2011 11:26:15 +0000 (13:26 +0200)]
windows compatibility for tools
(size_t vs uint...)
and tests (.lib vs .a)
dsarrut [Tue, 14 Jun 2011 11:00:24 +0000 (13:00 +0200)]
add QtNetwork for Fedora build
dsarrut [Tue, 14 Jun 2011 10:58:55 +0000 (12:58 +0200)]
add QtNetwork for Fedora build
Vivien Delmon [Tue, 14 Jun 2011 08:59:50 +0000 (10:59 +0200)]
Add padding in clitkExtractLung
Add padding around the patient to form one big air area around him.
ExtractLung relies on this assumption which was false for dir-labs
patients cropped around the ribcage.
Vivien Delmon [Tue, 14 Jun 2011 07:39:28 +0000 (09:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 14 Jun 2011 07:38:15 +0000 (09:38 +0200)]
Add test outside SearchForTrackea to avoid infinite loop
When clitkExtractLung did not find the trackea it looped infinitly.
Vivien Delmon [Tue, 14 Jun 2011 07:35:20 +0000 (09:35 +0200)]
Add --noAutoCrop option to clitkExtractLung
dsarrut [Thu, 9 Jun 2011 12:38:42 +0000 (14:38 +0200)]
Remove comments
dsarrut [Thu, 9 Jun 2011 12:36:39 +0000 (14:36 +0200)]
Add "normalize" and "divide by a scalar"
dsarrut [Thu, 9 Jun 2011 12:35:51 +0000 (14:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Thu, 9 Jun 2011 09:52:31 +0000 (11:52 +0200)]
still on bug 375
- image origin is now also updated to cope with crop
Simon Rit [Thu, 9 Jun 2011 09:22:51 +0000 (11:22 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Thu, 9 Jun 2011 09:19:48 +0000 (11:19 +0200)]
Updating reslice filter information in UpdateDisplayExtent was not enough, calling
AdjustResliceToSliceOrientation does a better job although it should not
be necessary.
Simon Rit [Wed, 8 Jun 2011 15:45:12 +0000 (17:45 +0200)]
Added "Reset transformation to identity" in image right-click menu
dsarrut [Thu, 9 Jun 2011 05:23:05 +0000 (07:23 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Wed, 8 Jun 2011 16:25:37 +0000 (18:25 +0200)]
solved bug 375 (Binarize after crop)
- image index is now forced to zero after passing through cropping filter
+ apparently solved other crop-related bugs... (please test!)
- also did some refactoring and clean-up
Simon Rit [Wed, 8 Jun 2011 15:44:51 +0000 (17:44 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Wed, 8 Jun 2011 15:34:55 +0000 (17:34 +0200)]
Remove trailing whitespace
Vivien Delmon [Wed, 8 Jun 2011 15:31:33 +0000 (17:31 +0200)]
Add padding in clitkExtractPatient
Add padding around the patient to form one big air area around the
patient. ExtractPatient relies on this assumption which was false for
dir-labs patients cropped around the ribcage.
Simon Rit [Wed, 8 Jun 2011 13:04:46 +0000 (15:04 +0200)]
Removed empty file
dsarrut [Wed, 8 Jun 2011 05:39:35 +0000 (07:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 7 Jun 2011 15:01:04 +0000 (17:01 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Tue, 7 Jun 2011 14:41:18 +0000 (16:41 +0200)]
solved bug 442 (2D+t vector field)
- added another image type: VECTORFIELDWITHTIME
Romulo Pinho [Tue, 7 Jun 2011 12:46:57 +0000 (14:46 +0200)]
solved bug 519 (Fusion flickering)
Romulo Pinho [Tue, 7 Jun 2011 10:44:36 +0000 (12:44 +0200)]
removal of threshold test for random point selection
Romulo Pinho [Tue, 7 Jun 2011 08:33:09 +0000 (10:33 +0200)]
removal of threshold test for point selction
Romulo Pinho [Tue, 7 Jun 2011 08:04:11 +0000 (10:04 +0200)]
Merge branch 'master' into blutdirmaster
dsarrut [Tue, 7 Jun 2011 05:27:34 +0000 (07:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server