]> Creatis software - clitk.git/log
clitk.git
13 years agoMathieu Malaterre :
delmon [Thu, 31 Mar 2011 15:24:50 +0000 (15:24 +0000)]
Mathieu Malaterre :
  - From gdcm 1.x to gdcm 2.0
clitk should compile with itk 3.20 and gdcm 2.0

13 years agoAdd missing ifdef.
delmon [Thu, 31 Mar 2011 15:22:02 +0000 (15:22 +0000)]
Add missing ifdef.

13 years agoRomulo:
dsarrut [Thu, 31 Mar 2011 13:28:16 +0000 (13:28 +0000)]
Romulo:
- removed #include <vtkColor.h>

13 years agoRomulo:
dsarrut [Thu, 31 Mar 2011 13:27:30 +0000 (13:27 +0000)]
Romulo:
- solved bug #283
   + rendering logic in vvSlicer::Render was blocking cursor updates if corner annotation was not visible

13 years agoRemoved unused file
srit [Thu, 31 Mar 2011 12:00:21 +0000 (12:00 +0000)]
Removed unused file

13 years agoRemoved unused vvs.cxx
srit [Thu, 31 Mar 2011 11:52:56 +0000 (11:52 +0000)]
Removed unused vvs.cxx

13 years agoRemove clitkTestFilter also in CMakelist.txt
delmon [Thu, 31 Mar 2011 09:55:23 +0000 (09:55 +0000)]
Remove clitkTestFilter also in CMakelist.txt

13 years ago[BUG] change __APPLE__ to APPLE the first is the C/C++ macro defined by CMake
delmon [Thu, 31 Mar 2011 08:04:37 +0000 (08:04 +0000)]
[BUG] change __APPLE__ to APPLE the first is the C/C++ macro defined by CMake
and the second the CMake macro.

13 years agoremove test files
dsarrut [Thu, 31 Mar 2011 07:55:13 +0000 (07:55 +0000)]
remove test files

13 years agoRemove test file
dsarrut [Thu, 31 Mar 2011 07:54:28 +0000 (07:54 +0000)]
Remove test file

13 years agoWindows compiling errors (ambiguous call to pow and variable in switch)
srit [Wed, 30 Mar 2011 10:10:05 +0000 (10:10 +0000)]
Windows compiling errors (ambiguous call to pow and variable in switch)

13 years agoAdd EPID conversion (2^16 - value)/alpha
dsarrut [Tue, 29 Mar 2011 14:26:56 +0000 (14:26 +0000)]
Add EPID conversion (2^16 - value)/alpha

13 years agoFrom gdcm 1.x to gdcm 2.0
delmon [Tue, 29 Mar 2011 13:14:10 +0000 (13:14 +0000)]
From gdcm 1.x to gdcm 2.0

13 years agoRemoved debug stuff
srit [Tue, 29 Mar 2011 09:21:43 +0000 (09:21 +0000)]
Removed debug stuff

13 years agoUse QSharedPointers for vvROIActors
srit [Tue, 29 Mar 2011 09:10:17 +0000 (09:10 +0000)]
Use QSharedPointers for vvROIActors

13 years agoError in loop for removing actors in destructor
srit [Tue, 29 Mar 2011 09:06:23 +0000 (09:06 +0000)]
Error in loop for removing actors in destructor

13 years agoRounding errors in display extent of overlay, fusion and vf.
srit [Tue, 29 Mar 2011 08:47:14 +0000 (08:47 +0000)]
Rounding errors in display extent of overlay, fusion and vf.

13 years agoAdd clitkDD for debug
dsarrut [Mon, 28 Mar 2011 14:55:02 +0000 (14:55 +0000)]
Add clitkDD for debug

13 years agoadd SliceBySliceBuildLineSegmentAccordingToExtremaPosition
dsarrut [Mon, 28 Mar 2011 14:52:58 +0000 (14:52 +0000)]
add SliceBySliceBuildLineSegmentAccordingToExtremaPosition

13 years agoUse smart pointers for vvSlicers
srit [Mon, 28 Mar 2011 13:51:00 +0000 (13:51 +0000)]
Use smart pointers for vvSlicers

13 years agoMemory leak hunt: vvBinaryImageOverlayActor vvImageContour vVImageReader are now...
srit [Mon, 28 Mar 2011 13:29:49 +0000 (13:29 +0000)]
Memory leak hunt: vvBinaryImageOverlayActor vvImageContour vVImageReader are now itk::LightObject, use QSharedPointer in vvToolStructureSetManager

13 years agoUseless to clear in destructor
srit [Mon, 28 Mar 2011 13:19:00 +0000 (13:19 +0000)]
Useless to clear in destructor

13 years agoRomulo:
dsarrut [Mon, 28 Mar 2011 10:45:48 +0000 (10:45 +0000)]
Romulo:

- Tool now supports files in pts (Jef) and txt (VV) formats (-t/--type option)

13 years agoAccount for transform when updating display extent of vf, fusion and overlay
srit [Mon, 28 Mar 2011 08:13:11 +0000 (08:13 +0000)]
Account for transform when updating display extent of vf, fusion and overlay

13 years agoFix for bug #274: move JoinSlices definition in .h
srit [Mon, 28 Mar 2011 07:37:25 +0000 (07:37 +0000)]
Fix for bug #274: move JoinSlices definition in .h

13 years agodo not need clitkSegmentationUtils
dsarrut [Mon, 28 Mar 2011 05:36:21 +0000 (05:36 +0000)]
do not need clitkSegmentationUtils

13 years agoLast errors
srit [Sun, 27 Mar 2011 00:41:47 +0000 (00:41 +0000)]
Last errors

13 years agoErrors in previous commit
srit [Sat, 26 Mar 2011 22:57:22 +0000 (22:57 +0000)]
Errors in previous commit

13 years agoTemp fix (see http://kingkong.grid.creatis.insa-lyon.fr:9002/issues/274)
srit [Sat, 26 Mar 2011 22:56:32 +0000 (22:56 +0000)]
Temp fix (see http://kingkong.grid.creatis.insa-lyon.fr:9002/issues/274)

13 years agoAnother lrint
srit [Sat, 26 Mar 2011 22:55:10 +0000 (22:55 +0000)]
Another lrint

13 years agoRemoved warning (same name used twice for layout widgets)
srit [Sat, 26 Mar 2011 21:46:01 +0000 (21:46 +0000)]
Removed warning (same name used twice for layout widgets)

13 years agoReplace rint with portable function
srit [Sat, 26 Mar 2011 21:43:25 +0000 (21:43 +0000)]
Replace rint with portable function

13 years agoCorrect last commit
srit [Sat, 26 Mar 2011 21:39:36 +0000 (21:39 +0000)]
Correct last commit

13 years agoMSVC++ seems a bit more strict than gcc with c++...
srit [Sat, 26 Mar 2011 21:21:13 +0000 (21:21 +0000)]
MSVC++ seems a bit more strict than gcc with c++...

13 years agoPut mMesh in smart pointer
srit [Fri, 25 Mar 2011 17:35:52 +0000 (17:35 +0000)]
Put mMesh in smart pointer

13 years agoMore vtkSmartPointer
srit [Fri, 25 Mar 2011 14:21:11 +0000 (14:21 +0000)]
More vtkSmartPointer

13 years agoDelete widget first, the image data after
srit [Fri, 25 Mar 2011 14:20:14 +0000 (14:20 +0000)]
Delete widget first, the image data after

13 years agoRomulo:
dsarrut [Fri, 25 Mar 2011 13:58:48 +0000 (13:58 +0000)]
Romulo:
Add --output (-o) option. stdout is now used for verbose mode only.

13 years agoAttempt to remove some leaks. DicomRT_Contour, DicomRT_ROI and DicomRT_StructureSet...
srit [Fri, 25 Mar 2011 13:39:53 +0000 (13:39 +0000)]
Attempt to remove some leaks. DicomRT_Contour, DicomRT_ROI and DicomRT_StructureSet are now itk::LightObjects with private constructors

13 years agoRomulo:
dsarrut [Fri, 25 Mar 2011 13:30:53 +0000 (13:30 +0000)]
Romulo:
A couple of corrections and more debug info...

13 years agoRomulo:
dsarrut [Fri, 25 Mar 2011 13:15:28 +0000 (13:15 +0000)]
Romulo:
- new tool: clitkTransformLandmarks
Trasnform a set of landmarks with the given 4x4 matrix. Output to stdout.

13 years agoRemoved old file from compilation list
srit [Fri, 25 Mar 2011 12:57:39 +0000 (12:57 +0000)]
Removed old file from compilation list

13 years agoRemoved old files, now in common
srit [Fri, 25 Mar 2011 12:52:10 +0000 (12:52 +0000)]
Removed old files, now in common

13 years agoclitkGammaIndex uses vtkCellLocator
dsarrut [Fri, 25 Mar 2011 09:30:51 +0000 (09:30 +0000)]
clitkGammaIndex uses vtkCellLocator

13 years ago*** empty log message ***
grevillot [Fri, 25 Mar 2011 06:57:11 +0000 (06:57 +0000)]
*** empty log message ***

13 years agoImprovement of clitkGammaIndex.cxx by changing distance computation class.
delmon [Thu, 24 Mar 2011 16:45:49 +0000 (16:45 +0000)]
Improvement of clitkGammaIndex.cxx by changing distance computation class.

13 years agoPut mDefaultLUTColor in smart pointer to avoid memory leak
srit [Thu, 24 Mar 2011 16:24:59 +0000 (16:24 +0000)]
Put mDefaultLUTColor in smart pointer to avoid memory leak

13 years agoCorrect VFResample (now should work)
dsarrut [Thu, 24 Mar 2011 15:46:41 +0000 (15:46 +0000)]
Correct VFResample (now should work)

13 years agoh now hides corner annotations as well
srit [Thu, 24 Mar 2011 13:45:13 +0000 (13:45 +0000)]
h now hides corner annotations as well

13 years agoh now hides corner annotations as well
srit [Thu, 24 Mar 2011 13:36:35 +0000 (13:36 +0000)]
h now hides corner annotations as well

13 years ago[BUG] Change to signed distance.
delmon [Thu, 24 Mar 2011 10:14:29 +0000 (10:14 +0000)]
[BUG] Change to signed distance.

13 years agoAdd S3A, correct minors for S7
dsarrut [Thu, 24 Mar 2011 07:33:42 +0000 (07:33 +0000)]
Add S3A, correct minors for S7

13 years agoAdd reference count for list of loaded image in the afdb
dsarrut [Thu, 24 Mar 2011 07:32:08 +0000 (07:32 +0000)]
Add reference count for list of loaded image in the afdb

13 years agoAdd object uniqueCCL flag for SliceBySliceRelativePosition
dsarrut [Thu, 24 Mar 2011 07:30:49 +0000 (07:30 +0000)]
Add object uniqueCCL flag for SliceBySliceRelativePosition

13 years agoAdd "NotLeftTo" relative position and other
dsarrut [Thu, 24 Mar 2011 07:29:59 +0000 (07:29 +0000)]
Add "NotLeftTo" relative position and other

13 years agopgueth:
delmon [Wed, 23 Mar 2011 13:38:26 +0000 (13:38 +0000)]
pgueth:
  + Add clitkGammaIndex computation.

13 years agoRomulo:
dsarrut [Tue, 22 Mar 2011 16:55:12 +0000 (16:55 +0000)]
Romulo:
- Corrected bug when the size of the dicom template should be used as the reference for the resampling, instead of the spacing
- Added a command line option to for the size as the reference (--useSizeAsReference - default=off)

13 years agoRomulo:
dsarrut [Tue, 22 Mar 2011 16:25:50 +0000 (16:25 +0000)]
Romulo:
- Corrected bug when the size of the dicom template should be used as the reference for the resampling, instead of the spacing
- Added a command line option to for the size as the reference (--useSizeAsReference - default=off)

13 years agoNew icon for the MIP tool
dsarrut [Tue, 22 Mar 2011 15:51:10 +0000 (15:51 +0000)]
New icon for the MIP tool

13 years agoPut this tool in the tools menu (remove from experimental)
dsarrut [Tue, 22 Mar 2011 15:50:39 +0000 (15:50 +0000)]
Put this tool in the tools menu (remove from experimental)
Display an error message for 2D images

13 years agoCorrect bug in the filename when the same filename is used
dsarrut [Tue, 22 Mar 2011 15:49:52 +0000 (15:49 +0000)]
Correct bug in the filename when the same filename is used

13 years ago*** empty log message ***
dsarrut [Tue, 22 Mar 2011 15:49:24 +0000 (15:49 +0000)]
*** empty log message ***

13 years agoRemove old MaximumIntensityProjection (menu and callback)
dsarrut [Tue, 22 Mar 2011 15:48:15 +0000 (15:48 +0000)]
Remove old MaximumIntensityProjection (menu and callback)

13 years agoRemove old MaximumIntensityProjection
dsarrut [Tue, 22 Mar 2011 15:47:16 +0000 (15:47 +0000)]
Remove old MaximumIntensityProjection

13 years agoAdapt vv RPATH to remove useless building path.
delmon [Tue, 22 Mar 2011 10:07:31 +0000 (10:07 +0000)]
Adapt vv RPATH to remove useless building path.
Install vv in bin subdirectory.

13 years agoRemove vtkHybrid from clitkCommon and add it only when it is needed
delmon [Tue, 22 Mar 2011 10:05:42 +0000 (10:05 +0000)]
Remove vtkHybrid from clitkCommon and add it only when it is needed
(clitkRTStruct).

13 years agoFixed bugs in libstatgrab
srit [Mon, 21 Mar 2011 17:45:11 +0000 (17:45 +0000)]
Fixed bugs in libstatgrab

13 years agoRomulo:
srit [Mon, 21 Mar 2011 16:09:05 +0000 (16:09 +0000)]
Romulo:
- set Link/Link All functionality
  + when linking two images: take the one in the first combo box (left) as the reference for viewing adjustments
  + when linking all images: take the last manipulated image as the reference. The last manipulated image is the one with which the user last interacted using the mouse (mouseclick, mousewheel, but NOT mousemove)

13 years agoRemoved cmake memory option
srit [Mon, 21 Mar 2011 15:27:18 +0000 (15:27 +0000)]
Removed cmake memory option

13 years agoMSVC++ complains that the exception is not used, put debugging message back
srit [Sun, 20 Mar 2011 20:01:44 +0000 (20:01 +0000)]
MSVC++ complains that the exception is not used, put debugging message back

13 years agoFixed compiling error by MSVC++
srit [Sun, 20 Mar 2011 20:00:49 +0000 (20:00 +0000)]
Fixed compiling error by MSVC++

13 years agoCorrected bug when opening unexisting file (introduced by myself in version 1.52)
srit [Sun, 20 Mar 2011 20:00:13 +0000 (20:00 +0000)]
Corrected bug when opening unexisting file (introduced by myself in version 1.52)

13 years agoUpdate panel height
dsarrut [Fri, 18 Mar 2011 12:50:29 +0000 (12:50 +0000)]
Update panel height

13 years agoCheck image size before performing operation
dsarrut [Fri, 18 Mar 2011 12:49:55 +0000 (12:49 +0000)]
Check image size before performing operation

13 years agoResample tool now use new resampleImage class (use the right number of thread)
dsarrut [Fri, 18 Mar 2011 12:49:25 +0000 (12:49 +0000)]
Resample tool now use new resampleImage class (use the right number of thread)

13 years agoAdd new resampleImageLib
dsarrut [Fri, 18 Mar 2011 12:48:44 +0000 (12:48 +0000)]
Add new resampleImageLib

13 years agoCorrect tool name
dsarrut [Fri, 18 Mar 2011 12:48:26 +0000 (12:48 +0000)]
Correct tool name

13 years agoRemove debug verbose
dsarrut [Fri, 18 Mar 2011 12:48:06 +0000 (12:48 +0000)]
Remove debug verbose

13 years agoAdd ResampleImage library for vv
dsarrut [Fri, 18 Mar 2011 12:47:51 +0000 (12:47 +0000)]
Add ResampleImage library for vv

13 years agoAdd HaveSameSizeAndSpacingThan function
dsarrut [Fri, 18 Mar 2011 12:47:17 +0000 (12:47 +0000)]
Add HaveSameSizeAndSpacingThan function

13 years agoslight changes to use nex clitkVFResample.ggo
dsarrut [Fri, 18 Mar 2011 10:06:05 +0000 (10:06 +0000)]
slight changes to use nex clitkVFResample.ggo

13 years agoremove olf clitkImageResample (keep clitkResampleImage)
dsarrut [Fri, 18 Mar 2011 10:04:24 +0000 (10:04 +0000)]
remove olf clitkImageResample (keep clitkResampleImage)

13 years agofirst version (copy of old clitkImageResample.ggo)
dsarrut [Fri, 18 Mar 2011 10:02:39 +0000 (10:02 +0000)]
first version (copy of old clitkImageResample.ggo)

13 years agoremove unused code for imageresample. The "true" one is clitkResampleImage and not...
dsarrut [Fri, 18 Mar 2011 10:00:40 +0000 (10:00 +0000)]
remove unused code for imageresample. The "true" one is clitkResampleImage and not clitkImageResample

13 years agoDisplay values of two images and their difference in the same way instead of rounding...
srit [Thu, 17 Mar 2011 18:39:09 +0000 (18:39 +0000)]
Display values of two images and their difference in the same way instead of rounding to the second decimal

13 years agoRomulo:
srit [Thu, 17 Mar 2011 14:43:08 +0000 (14:43 +0000)]
Romulo:
1) Perform image resampling if the spacing of the MHD file doesn't match the slice thickness found in the reference dicom series. Use the dicom spacing as the output.
2) Remove files from the dicom series if the number of slices in the MHD doesn't match the number of files in the image (it may be smaller due to rounding of image resampling). An error is still generated if there are more slices than files, though.
- issue: VV somehow still detects all images (Open Dicom), but the number of files and the series itself are correctly read.
3) Warnings are printed in both cases above if "verbose" is enabled.

13 years agoRomulo: changed rounding of image resampling to floor() because, from a clinical...
srit [Thu, 17 Mar 2011 14:42:13 +0000 (14:42 +0000)]
Romulo: changed rounding of image resampling to floor() because, from a clinical point of view, it seems to be better to miss a slice than to add information that didn't exist in the original image.

13 years agoAttempted to fix the mess of the resample fucker wrt to setting spacing and dims
srit [Wed, 16 Mar 2011 17:19:22 +0000 (17:19 +0000)]
Attempted to fix the mess of the resample fucker wrt to setting spacing and dims

13 years agoAdded reference to bug report for previous commit
srit [Wed, 16 Mar 2011 15:02:26 +0000 (15:02 +0000)]
Added reference to bug report for previous commit

13 years agoForce update of display extents to fix linked navigation bug + move propagation out...
srit [Wed, 16 Mar 2011 14:57:02 +0000 (14:57 +0000)]
Force update of display extents to fix linked navigation bug + move propagation out of loop

13 years agoRomulo: invert matrix in .mat to be consistent with mhd matrices handled by itk
srit [Tue, 15 Mar 2011 16:59:53 +0000 (16:59 +0000)]
Romulo: invert matrix in .mat to be consistent with mhd matrices handled by itk

13 years agoReturn nan when quering scalar value outside whole extent
srit [Tue, 15 Mar 2011 15:37:39 +0000 (15:37 +0000)]
Return nan when quering scalar value outside whole extent

13 years agoRomulo: fixed crash on display transform for vf, overlay and fusion images
srit [Tue, 15 Mar 2011 15:24:47 +0000 (15:24 +0000)]
Romulo: fixed crash on display transform for vf, overlay and fusion images

13 years agoRomulo: fixed log file, AppendOn was missing
srit [Tue, 15 Mar 2011 14:58:14 +0000 (14:58 +0000)]
Romulo: fixed log file, AppendOn was missing

13 years agoCorrected log option for portability
srit [Mon, 14 Mar 2011 23:33:51 +0000 (23:33 +0000)]
Corrected log option for portability

13 years agoAdded VF color option and corresponding button
srit [Mon, 14 Mar 2011 23:13:13 +0000 (23:13 +0000)]
Added VF color option and corresponding button

13 years agoDisabled NKI transform function
srit [Mon, 14 Mar 2011 22:54:15 +0000 (22:54 +0000)]
Disabled NKI transform function

13 years agosmall gui update
dsarrut [Fri, 11 Mar 2011 08:49:13 +0000 (08:49 +0000)]
small gui update

13 years agoSet the correct window/level in the spinbox when preset is enabled
dsarrut [Fri, 11 Mar 2011 08:48:41 +0000 (08:48 +0000)]
Set the correct window/level in the spinbox when preset is enabled

13 years agoDo not compile those tests by default
dsarrut [Fri, 11 Mar 2011 08:32:29 +0000 (08:32 +0000)]
Do not compile those tests by default