]> Creatis software - clitk.git/log
clitk.git
9 years agoAdded clitkSum to take the sum in one direction, corrected clitkFooImage
Simon Rit [Mon, 7 Dec 2015 12:07:19 +0000 (13:07 +0100)]
Added clitkSum to take the sum in one direction, corrected clitkFooImage
and removed it from compilation

9 years agoChange in headers order
Thomas Cajgfinger [Tue, 29 Sep 2015 14:39:23 +0000 (16:39 +0200)]
Change in headers order

9 years agoMerge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Brent Huisman [Tue, 15 Sep 2015 13:42:23 +0000 (15:42 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

9 years agoModified gate_job_cluster.job to request 3GB by default.
Brent Huisman [Tue, 15 Sep 2015 13:42:01 +0000 (15:42 +0200)]
Modified gate_job_cluster.job to request 3GB by default.

9 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 15 Sep 2015 09:39:00 +0000 (11:39 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

9 years agoChanged qt git url
Simon Rit [Tue, 15 Sep 2015 09:38:06 +0000 (11:38 +0200)]
Changed qt git url

9 years agoSync RTK files with the RTK public repo
Simon Rit [Tue, 15 Sep 2015 09:37:44 +0000 (11:37 +0200)]
Sync RTK files with the RTK public repo

9 years agoMerge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Brent Huisman [Tue, 8 Sep 2015 14:48:23 +0000 (16:48 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

9 years agoAdded PixelTypeDownCast specialization for double to double 'conversion'.
Brent Huisman [Tue, 8 Sep 2015 14:38:42 +0000 (16:38 +0200)]
Added PixelTypeDownCast specialization for double to double 'conversion'.

9 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 24 Jun 2015 08:50:44 +0000 (10:50 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

9 years agoFixes for ITK v4.8rc02
Simon Rit [Wed, 24 Jun 2015 08:49:06 +0000 (10:49 +0200)]
Fixes for ITK v4.8rc02

9 years agoFixed MatrixTransformToVF's option "--like" with ITK > 4.6
Cyril Mory [Wed, 10 Jun 2015 09:13:18 +0000 (11:13 +0200)]
Fixed MatrixTransformToVF's option "--like" with ITK > 4.6

9 years agoFix enum define that conflicts with system macro on mac os
Simon Rit [Fri, 24 Apr 2015 23:43:37 +0000 (01:43 +0200)]
Fix enum define that conflicts with system macro on mac os

9 years agoFix for MacOS
Simon Rit [Fri, 24 Apr 2015 22:46:13 +0000 (00:46 +0200)]
Fix for MacOS

9 years agoMore tolerant stat file merging
David Sarrut [Wed, 25 Feb 2015 09:05:46 +0000 (10:05 +0100)]
More tolerant stat file merging

9 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 18 Feb 2015 09:48:47 +0000 (10:48 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

9 years agochanged #!/usr/bin/env bash to #! /usr/local/bin/bash -lx
catherine quinones [Thu, 12 Feb 2015 15:04:44 +0000 (16:04 +0100)]
changed #!/usr/bin/env bash to #! /usr/local/bin/bash -lx

9 years agochanged #!/usr/bin/env bash to #! /usr/local/bin/bash -lx
catherine quinones [Thu, 12 Feb 2015 15:03:38 +0000 (16:03 +0100)]
changed #!/usr/bin/env bash to #! /usr/local/bin/bash -lx

9 years agochanged /usr/bin/env to /bin/env and added date before and after the data transfer
catherine quinones [Wed, 11 Feb 2015 15:23:27 +0000 (16:23 +0100)]
changed /usr/bin/env to /bin/env and added date before and after the data transfer

9 years agochanged /usr/bin/env to /bin/env
catherine quinones [Wed, 11 Feb 2015 11:25:33 +0000 (12:25 +0100)]
changed /usr/bin/env to /bin/env
added date before and after the job data transfer

9 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 6 Jan 2015 14:11:34 +0000 (15:11 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agothe barycenter tool is the same as the image moment tool - so we delete it
Presles Benoît [Tue, 16 Dec 2014 11:01:31 +0000 (12:01 +0100)]
the barycenter tool is the same as the image moment tool - so we delete it

10 years agonew tool to calculate the barycenter of a binary image
Presles Benoît [Tue, 16 Dec 2014 10:42:37 +0000 (11:42 +0100)]
new tool to calculate the barycenter of a binary image

10 years agoImproved robustness of ImagX xml file reader
Simon Rit [Tue, 25 Nov 2014 06:51:24 +0000 (07:51 +0100)]
Improved robustness of ImagX xml file reader

10 years agoAdd dosenormafactor parameter
David Sarrut [Tue, 4 Nov 2014 10:33:31 +0000 (11:33 +0100)]
Add dosenormafactor parameter

10 years agoCorrect else position
David Sarrut [Tue, 4 Nov 2014 09:13:25 +0000 (10:13 +0100)]
Correct else position

10 years agocorrect : with ;
David Sarrut [Tue, 4 Nov 2014 09:13:02 +0000 (10:13 +0100)]
correct : with ;

10 years agoprotect FATAL macro
David Sarrut [Tue, 4 Nov 2014 09:12:37 +0000 (10:12 +0100)]
protect FATAL macro

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 21 Oct 2014 05:47:12 +0000 (07:47 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agoAdded direction to --like option
Simon Rit [Tue, 21 Oct 2014 05:46:21 +0000 (07:46 +0200)]
Added direction to --like option

10 years agoRemove unusable code.
Agata Krason [Thu, 16 Oct 2014 16:16:44 +0000 (18:16 +0200)]
Remove unusable code.

10 years agoModification cumulative dvh.
Agata Krason [Thu, 16 Oct 2014 16:01:53 +0000 (18:01 +0200)]
Modification cumulative dvh.

10 years agoAdded --force option to gate_power_merge.sh
Simon Rit [Mon, 13 Oct 2014 11:50:22 +0000 (13:50 +0200)]
Added --force option to gate_power_merge.sh

10 years agoAdded more options to clitkImageUncertainty, default should be identical
Simon Rit [Wed, 8 Oct 2014 11:54:24 +0000 (13:54 +0200)]
Added more options to clitkImageUncertainty, default should be identical

10 years agoFixed typo
Simon Rit [Thu, 4 Sep 2014 10:19:23 +0000 (12:19 +0200)]
Fixed typo

10 years agoCOMP: ITK v4.6
Simon Rit [Tue, 2 Sep 2014 06:38:26 +0000 (08:38 +0200)]
COMP: ITK v4.6

10 years agoFix missing breaks + handle default in enum
Simon Rit [Tue, 2 Sep 2014 06:36:45 +0000 (08:36 +0200)]
Fix missing breaks + handle default in enum

10 years agoFix for default parameter (with Simon)
Catherine-Therese Quinones [Tue, 29 Jul 2014 11:58:32 +0000 (13:58 +0200)]
Fix for default parameter (with Simon)

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 8 Jul 2014 14:35:35 +0000 (16:35 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agoFix for parameters passed to Gate
Simon Rit [Tue, 8 Jul 2014 14:34:58 +0000 (16:34 +0200)]
Fix for parameters passed to Gate

10 years agoModified --dvhistogram option.
Agata Krason [Fri, 13 Jun 2014 13:32:18 +0000 (15:32 +0200)]
Modified --dvhistogram option.

10 years agoRemove clitkDVH tool and add --dvhistogram option to clitkImageStatistics.
Agata Krason [Thu, 12 Jun 2014 18:37:32 +0000 (20:37 +0200)]
Remove clitkDVH tool and add --dvhistogram option to clitkImageStatistics.

10 years agoSTYLE: Move CMake commands to match new conventions
Hans Johnson [Thu, 5 Jun 2014 15:59:00 +0000 (10:59 -0500)]
STYLE: Move CMake commands to match new conventions

The next step in removing end-of-lines is to run through all the
CMakeLists.txt files and clean them up.

This also changes all the key words to lower
case. The primary reason for changing key words is that all documentation for
CMakeLists.txt now shows the key words as lower case. Even the printed
“Mastering CMake v5” uses lower case. I’ve come across this several
times in my class where students stumble over the fact that the
documentation about Cmake does not match the implementation in ITK.

I have a script (a wrapper around a vim macro) written that can make
these substituions reliably (Tested on the BRAINS tree, the Slicer3
tree, and the ITK tree without causing any errors).  more complete
documentaiton can be found attached to

10 years agoCOMP: First Mac 10.9 build fixes.
Hans Johnson [Thu, 5 Jun 2014 14:43:10 +0000 (09:43 -0500)]
COMP: First Mac 10.9 build fixes.

This patch probably includes a few items that are
not strictly necessary, but during the fumbling
around to find a working solution, these
were the identified failures.

Updating VTK and ITK were key components to
make this process work.

10 years agoCOMP: Update ITK and VTK
Hans Johnson [Sat, 31 May 2014 14:01:12 +0000 (09:01 -0500)]
COMP: Update ITK and VTK

ITK and VTK updates allow building with c++11 on
mavericks with the latest apple clang compiler.

10 years agoCOMP: C++11 identified type missmatches
Hans Johnson [Sat, 31 May 2014 12:59:26 +0000 (07:59 -0500)]
COMP: C++11 identified type missmatches

rtkHisImageIO.cxx:149:53: error: constant
expression evaluates to 134 which cannot be narrowed to type 'char'
[-Wc++11-narrowing]

10 years agoAgata - why did you delete these tools ?
Benoît Presles [Mon, 2 Jun 2014 14:44:21 +0000 (16:44 +0200)]
Agata - why did you delete these tools ?

10 years agoFirst version of new tool clitkDVH - possibility to compute dose volume histogram...
Agata Krason [Tue, 27 May 2014 17:27:30 +0000 (19:27 +0200)]
First version of new tool clitkDVH - possibility to compute dose volume histogram %/cc/voxels.

10 years agoFix clitkMergeRootFiles, proper but nonobvious init for TFileMerger was missing.
Brent Huisman [Tue, 6 May 2014 16:00:18 +0000 (18:00 +0200)]
Fix clitkMergeRootFiles, proper but nonobvious init for TFileMerger was missing.

10 years agofor compatibility reasons I deleted the case insensitive search in OSX
Benoît Presles [Fri, 2 May 2014 10:49:49 +0000 (12:49 +0200)]
for compatibility reasons I deleted the case insensitive search in OSX

10 years agoDo not remove afs files and job log files at the end of the submission,
Simon Rit [Wed, 12 Mar 2014 07:11:01 +0000 (08:11 +0100)]
Do not remove afs files and job log files at the end of the submission,
   only the other files

10 years agoFix merge with the copy of mac folder and copy the mac folder in the
Simon Rit [Fri, 7 Mar 2014 10:25:07 +0000 (11:25 +0100)]
Fix merge with the copy of mac folder and copy the mac folder in the
results directory

10 years agoEnabled cluster script for CC IN2P3 (based on Pierre's dev)
Simon Rit [Fri, 7 Mar 2014 08:57:32 +0000 (09:57 +0100)]
Enabled cluster script for CC IN2P3 (based on Pierre's dev)

10 years agoFixed displayed slice number. Now 0-based and accurate...
Simon Rit [Thu, 6 Mar 2014 15:56:45 +0000 (16:56 +0100)]
Fixed displayed slice number. Now 0-based and accurate...

10 years agoEnable clitk IO
Simon Rit [Thu, 6 Mar 2014 06:50:39 +0000 (07:50 +0100)]
Enable clitk IO

10 years agoFix for one slice only
Simon Rit [Thu, 27 Feb 2014 08:48:51 +0000 (09:48 +0100)]
Fix for one slice only

10 years agoclitkPointRigidRegistration comment unnecessary header file
Dominik Spinczyk [Wed, 19 Feb 2014 12:45:07 +0000 (13:45 +0100)]
clitkPointRigidRegistration comment unnecessary header file

10 years agoNow calculate FRE
Dominik Spinczyk [Mon, 17 Feb 2014 09:48:18 +0000 (10:48 +0100)]
Now calculate FRE

10 years agoMoved back accidentally deleted tools
Dominik Spinczyk [Tue, 4 Feb 2014 12:07:28 +0000 (13:07 +0100)]
Moved back accidentally deleted tools

10 years agoRemoving polish comments
Dominik Spincwyk [Mon, 3 Feb 2014 15:24:05 +0000 (16:24 +0100)]
Removing polish comments

10 years agoFirst version of PointRigidRegistration
Dominik Spincwyk [Mon, 3 Feb 2014 14:44:27 +0000 (15:44 +0100)]
First version of PointRigidRegistration

10 years agoAdd explicit origin when resample
David Sarrut [Tue, 28 Jan 2014 15:20:09 +0000 (16:20 +0100)]
Add explicit origin when resample

10 years agoTake input/output spacing for origin
David Sarrut [Tue, 28 Jan 2014 15:19:34 +0000 (16:19 +0100)]
Take input/output spacing for origin

10 years agoDo not remove G4 data files
David Sarrut [Mon, 27 Jan 2014 14:21:52 +0000 (15:21 +0100)]
Do not remove G4 data files

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 20 Jan 2014 15:50:37 +0000 (16:50 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agonew tool = gaussian blur filtering + improved gradient magnitude tool + added help...
Benoît Presles [Fri, 17 Jan 2014 18:16:49 +0000 (19:16 +0100)]
new tool = gaussian blur filtering + improved gradient magnitude tool + added help to clitkImageLaplacian

10 years agoBack to the correct version... I think I am right...
Benoît Presles [Fri, 17 Jan 2014 18:04:09 +0000 (19:04 +0100)]
Back to the correct version... I think I am right...

10 years agoTrailing spaces
David Sarrut [Tue, 14 Jan 2014 07:11:30 +0000 (08:11 +0100)]
Trailing spaces

10 years agoAdd dcm extension
David Sarrut [Tue, 14 Jan 2014 07:10:44 +0000 (08:10 +0100)]
Add dcm extension

10 years agoAdd display matrix option
David Sarrut [Tue, 14 Jan 2014 07:09:55 +0000 (08:09 +0100)]
Add display matrix option

10 years agoRemove warning sprintf
David Sarrut [Tue, 14 Jan 2014 06:54:55 +0000 (07:54 +0100)]
Remove warning sprintf

10 years agoCopy macro files for log
David Sarrut [Tue, 14 Jan 2014 06:54:33 +0000 (07:54 +0100)]
Copy macro files for log

10 years agoNow work for single thread simulation
David Sarrut [Tue, 14 Jan 2014 06:54:09 +0000 (07:54 +0100)]
Now work for single thread simulation

10 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 10 Jan 2014 10:15:18 +0000 (11:15 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

10 years agoBack to the correct version... Benoit you will be hanged !
David Sarrut [Fri, 10 Jan 2014 10:14:50 +0000 (11:14 +0100)]
Back to the correct version... Benoit you will be hanged !

10 years agonew tool to normalize an image
Benoît Presles [Thu, 9 Jan 2014 13:43:47 +0000 (14:43 +0100)]
new tool to normalize an image

10 years agoDetect ITK_USE_SYSTEM_GDCM with target
Simon Rit [Sat, 4 Jan 2014 15:23:43 +0000 (16:23 +0100)]
Detect ITK_USE_SYSTEM_GDCM with target

10 years agoRemove setmode definition since it was not used and it prevents
Simon Rit [Fri, 3 Jan 2014 18:27:28 +0000 (19:27 +0100)]
Remove setmode definition since it was not used and it prevents
compilation on MacOS

11 years agoFixed issues with --like option
Simon Rit [Wed, 18 Dec 2013 15:25:28 +0000 (16:25 +0100)]
Fixed issues with --like option

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 10 Dec 2013 12:20:48 +0000 (13:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoUpdated help of vv command line
Simon Rit [Tue, 10 Dec 2013 12:14:15 +0000 (13:14 +0100)]
Updated help of vv command line

11 years agoRobust detection of GDCM compilation by ITK: made it robust to ITK installation
Simon Rit [Mon, 9 Dec 2013 20:55:01 +0000 (21:55 +0100)]
Robust detection of GDCM compilation by ITK: made it robust to ITK installation

11 years agoinverted IO reader order to solve a bug with vox files
Benoît Presles [Wed, 27 Nov 2013 09:54:56 +0000 (10:54 +0100)]
inverted IO reader order to solve a bug with vox files

11 years agodeleted an extra space in order to be able to grep the results of clitkImageInfo
Benoît Presles [Thu, 21 Nov 2013 12:44:39 +0000 (13:44 +0100)]
deleted an extra space in order to be able to grep the results of clitkImageInfo

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 12 Nov 2013 09:30:52 +0000 (10:30 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agonew tool to normalize image intensity
Benoît Presles [Tue, 12 Nov 2013 09:29:58 +0000 (10:29 +0100)]
new tool to normalize image intensity

11 years agoWhen clicking on the all button, also propagate fusion and overlay W/L
Simon Rit [Fri, 8 Nov 2013 11:21:48 +0000 (12:21 +0100)]
When clicking on the all button, also propagate fusion and overlay W/L

11 years agoAdded missing init for IO factories
Simon Rit [Fri, 8 Nov 2013 11:09:55 +0000 (12:09 +0100)]
Added missing init for IO factories

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 31 Oct 2013 15:47:25 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 31 Oct 2013 15:47:14 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoTool to multiply 4x4 matrices
Simon Rit [Thu, 31 Oct 2013 15:46:55 +0000 (16:46 +0100)]
Tool to multiply 4x4 matrices

11 years agoOption to save VV transform (mhd + .mat) in the new mhd
Simon Rit [Thu, 31 Oct 2013 15:45:21 +0000 (16:45 +0100)]
Option to save VV transform (mhd + .mat) in the new mhd

11 years agoMerge several run results in one
Simon Rit [Thu, 31 Oct 2013 14:43:11 +0000 (15:43 +0100)]
Merge several run results in one

11 years agoAllow symbolic links
Simon Rit [Thu, 31 Oct 2013 14:37:12 +0000 (15:37 +0100)]
Allow symbolic links

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 29 Oct 2013 18:00:31 +0000 (19:00 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoadded the possibility to compute the Laplacian of Gaussian (LoG) of an image
Benoît Presles [Tue, 29 Oct 2013 17:56:40 +0000 (18:56 +0100)]
added the possibility to compute the Laplacian of Gaussian (LoG) of an image

11 years agoRemove itkSetMacro
Vivien Delmon [Mon, 28 Oct 2013 12:24:45 +0000 (13:24 +0100)]
Remove itkSetMacro

In debug this Macro need the operator << (std::cout) which is not
defined for std::vector. Could be an idea to add a
clitkSetMacroWithoutDebug.

There is a discussion about this on the ITK developper ML :
http://www.itk.org/pipermail/insight-developers/2011-April/018174.html
But with no conclusion ...

11 years agoRemove useless include and trailing whitespaces
Vivien Delmon [Mon, 28 Oct 2013 12:23:45 +0000 (13:23 +0100)]
Remove useless include and trailing whitespaces

11 years agoDo not compile clitkDice with ITK < 4
Vivien Delmon [Fri, 25 Oct 2013 13:44:38 +0000 (15:44 +0200)]
Do not compile clitkDice with ITK < 4

clitkDice needs an itkLabelOverlapMeasuresImageFilter.h that was present
in clitk but has been removed (by David Sarrut !!) in
f4854864b1e9dacf51ffee720eeb4c72edb59e4f
The class is now part of ITK > 4.

11 years agonew tool to compute the laplacian of an image
Benoît Presles [Fri, 18 Oct 2013 13:12:34 +0000 (15:12 +0200)]
new tool to compute the laplacian of an image