]> Creatis software - clitk.git/log
clitk.git
12 years agoLINK_DIRECTORIES(${LIBSTATGRAB}/../lib) and
Gauthier Bouilhol [Wed, 29 Feb 2012 16:25:39 +0000 (17:25 +0100)]
LINK_DIRECTORIES(${LIBSTATGRAB}/../lib) and
LINK_DIRECTORIES(${LIBSTATGRAB}/../lib64) added

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Gauthier Bouilhol [Wed, 29 Feb 2012 13:39:34 +0000 (14:39 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoINCLUDE_DIRECTORIES(${LIBSTATGRAB}/../include) added to find statgrab.h
Gauthier Bouilhol [Wed, 29 Feb 2012 13:38:23 +0000 (14:38 +0100)]
INCLUDE_DIRECTORIES(${LIBSTATGRAB}/../include) added to find statgrab.h
after make install of libstatgrab

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 29 Feb 2012 13:10:22 +0000 (14:10 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agocorrected make install issue for Mac
Romulo Pinho [Wed, 29 Feb 2012 13:09:44 +0000 (14:09 +0100)]
corrected make install issue for Mac

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 29 Feb 2012 12:14:56 +0000 (13:14 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agoReplace tabulations with space in pts_to_landmarks script
Vivien Delmon [Wed, 29 Feb 2012 12:13:01 +0000 (13:13 +0100)]
Replace tabulations with space in pts_to_landmarks script

12 years ago--centre added to BLUTDIR call in midP
Romulo Pinho [Tue, 28 Feb 2012 12:25:47 +0000 (13:25 +0100)]
--centre added to BLUTDIR call in midP

12 years agoinitial image centralization (BLUT) is optional
Romulo Pinho [Tue, 28 Feb 2012 12:25:33 +0000 (13:25 +0100)]
initial image centralization (BLUT) is optional

- with --centre flag

12 years agoadded initial image centralization to BLUTDIR
Romulo Pinho [Tue, 28 Feb 2012 09:47:09 +0000 (10:47 +0100)]
added initial image centralization to BLUTDIR

12 years agosmall bug when opening .mat files in VV
Romulo Pinho [Fri, 24 Feb 2012 10:23:30 +0000 (11:23 +0100)]
small bug when opening .mat files in VV

12 years agoreplaced deprecated clitk tools in midP creation
Romulo Pinho [Wed, 22 Feb 2012 09:49:06 +0000 (10:49 +0100)]
replaced deprecated clitk tools in midP creation

12 years agoadded support to new vector type arithmetics
Romulo Pinho [Wed, 22 Feb 2012 09:48:26 +0000 (10:48 +0100)]
added support to new vector type arithmetics

12 years agoadded support to new vector pixel types
Romulo Pinho [Wed, 22 Feb 2012 09:48:01 +0000 (10:48 +0100)]
added support to new vector pixel types

12 years agocorrection in QVTK dependency
Romulo Pinho [Tue, 21 Feb 2012 15:23:33 +0000 (16:23 +0100)]
correction in QVTK dependency

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 21 Feb 2012 14:36:40 +0000 (15:36 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agocorrected error when opening 4D VFs
Romulo Pinho [Tue, 21 Feb 2012 14:35:54 +0000 (15:35 +0100)]
corrected error when opening 4D VFs

12 years agonew vector cast filter
Romulo Pinho [Tue, 21 Feb 2012 14:34:51 +0000 (15:34 +0100)]
new vector cast filter

- contrary to ITK's equivalent, supports fields with different number components per pixel

12 years agoRevert "corrected error when opening 4D vector fields"
Romulo Pinho [Tue, 21 Feb 2012 14:26:05 +0000 (15:26 +0100)]
Revert "corrected error when opening 4D vector fields"

This reverts commit 832f2cee39cf5f9c4eab850124dff5c96ea0b15c.

12 years agocorrected error when opening 4D vector fields
Romulo Pinho [Tue, 21 Feb 2012 14:14:51 +0000 (15:14 +0100)]
corrected error when opening 4D vector fields

12 years agoitk4 compatibility
Romulo Pinho [Tue, 21 Feb 2012 14:13:19 +0000 (15:13 +0100)]
itk4 compatibility

12 years agoRemoved typename outside template which prevents MSVC compilation
Simon Rit [Tue, 21 Feb 2012 13:09:32 +0000 (14:09 +0100)]
Removed typename outside template which prevents MSVC compilation

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 21 Feb 2012 12:34:16 +0000 (13:34 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoAdd vtkQVTK to VTK_LIBRARIES for old VTK.
Vivien Delmon [Tue, 21 Feb 2012 09:11:32 +0000 (10:11 +0100)]
Add vtkQVTK to VTK_LIBRARIES for old VTK.

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 20 Feb 2012 14:32:38 +0000 (15:32 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoAdded support to vector field arithmetics
Romulo Pinho [Mon, 20 Feb 2012 14:31:27 +0000 (15:31 +0100)]
Added support to vector field arithmetics

12 years agoUse real image center as default rotation center
Simon Rit [Mon, 20 Feb 2012 13:09:56 +0000 (14:09 +0100)]
Use real image center as default rotation center

12 years agoGui bug fix: x and z val were inverted
Simon Rit [Mon, 20 Feb 2012 13:08:07 +0000 (14:08 +0100)]
Gui bug fix: x and z val were inverted

12 years agoclitkSetBackground accepts vector fields
Romulo Pinho [Fri, 17 Feb 2012 14:36:50 +0000 (15:36 +0100)]
clitkSetBackground accepts vector fields

12 years agonew SetBackground filter
Romulo Pinho [Fri, 17 Feb 2012 10:02:29 +0000 (11:02 +0100)]
new SetBackground filter

- Accepts inputs and masks with different origins/spacings/dimensions. Only matching pixels are then processed. Non-mathcing pixels are directly copied from the input to the output.
- Inhreits from new filter: itk::FlexibleBinaryFunctorImageFilter

12 years agoAdded --help option for vv
Simon Rit [Wed, 15 Feb 2012 16:19:32 +0000 (17:19 +0100)]
Added --help option for vv

12 years agoKeep displayed angles in [-360,360] instead of [-180,180]
Simon Rit [Tue, 14 Feb 2012 18:44:01 +0000 (19:44 +0100)]
Keep displayed angles in [-360,360] instead of [-180,180]

12 years agoRemoved typename outside template which prevents MSVC compilation
Simon Rit [Tue, 14 Feb 2012 08:30:36 +0000 (09:30 +0100)]
Removed typename outside template which prevents MSVC compilation

12 years agoITK v4 compatibility
Simon Rit [Mon, 13 Feb 2012 17:03:43 +0000 (18:03 +0100)]
ITK v4 compatibility

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Mon, 13 Feb 2012 16:24:01 +0000 (17:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoitk4 compatibility
Romulo Pinho [Mon, 13 Feb 2012 16:12:28 +0000 (17:12 +0100)]
itk4 compatibility

12 years agoRemoved unnecessary includes and dependencies
Romulo Pinho [Mon, 13 Feb 2012 15:25:24 +0000 (16:25 +0100)]
Removed unnecessary includes and dependencies

12 years agoPut back and refactored manual rigid registration
Simon Rit [Mon, 13 Feb 2012 13:28:08 +0000 (14:28 +0100)]
Put back and refactored manual rigid registration

12 years agoChange font of matrix to typewriter type
Simon Rit [Mon, 13 Feb 2012 13:26:03 +0000 (14:26 +0100)]
Change font of matrix to typewriter type

12 years agoReally hide input selector
Simon Rit [Mon, 13 Feb 2012 13:25:39 +0000 (14:25 +0100)]
Really hide input selector

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 10 Feb 2012 09:54:07 +0000 (10:54 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

Conflicts:
common/clitkCoeffsToDVF.h
tools/clitkCoeffsToDVF.cxx

12 years agoThis is a combination of 3 commits.
Romulo Pinho [Thu, 9 Feb 2012 16:55:24 +0000 (17:55 +0100)]
This is a combination of 3 commits.
new filter to convert from BLUT coeffs to DVF

- refactoring of clitkConvertBSplineDeformableTransformToVFGenericFilter

corrections in last commit

removal of redundant coeffs to dvf tool

- updates in original coeffs to dvf tool
+ new clitk class/filter
- related toos use the new clitk filter

12 years agoBUG wrong tool name added to TOOLS_INSTALL
Vivien Delmon [Thu, 9 Feb 2012 14:12:54 +0000 (15:12 +0100)]
BUG wrong tool name added to TOOLS_INSTALL

- clitkAffineTransform and clitkImageMoment were not added to
  TOOLS_INSTALL. clitkDicom2Image was added multiple time instead.

12 years agoModified the string output of 4x4 matrix, now public for use in other
Simon Rit [Wed, 8 Feb 2012 18:52:16 +0000 (19:52 +0100)]
Modified the string output of 4x4 matrix, now public for use in other
parts of the code

12 years agoRemove warning for rtplan 2 gate tool
Simon Rit [Wed, 8 Feb 2012 18:45:04 +0000 (19:45 +0100)]
Remove warning for rtplan 2 gate tool

12 years agosmall WRAP_GGO issue fixed
Gauthier Bouilhol [Wed, 8 Feb 2012 14:05:15 +0000 (15:05 +0100)]
small WRAP_GGO issue fixed

12 years agoclitkDicomRTPlan2Gate tool added
Gauthier Bouilhol [Wed, 8 Feb 2012 13:59:50 +0000 (14:59 +0100)]
clitkDicomRTPlan2Gate tool added

12 years agoConvert coeffs to VF with itk bspline
Romulo Pinho [Mon, 6 Feb 2012 14:13:30 +0000 (15:13 +0100)]
Convert coeffs to VF with itk bspline

- conversion with BLUT has bugs (grid appears in VF's jacobian with anisotropic spacing)
- disabled 4D convertion (spatio temporal)
- conversion with BLUT still possible (type = 1, not default)
- input coefficient image is always in BLUT style
- input is converted to is converted to ITK style (one image per component) if type = 0

12 years agoFixed cmake version problem
Simon Rit [Sun, 5 Feb 2012 09:53:13 +0000 (10:53 +0100)]
Fixed cmake version problem

12 years agoMissing typenames, MSVC is less strict than gcc on that
Simon Rit [Sat, 4 Feb 2012 11:29:05 +0000 (12:29 +0100)]
Missing typenames, MSVC is less strict than gcc on that

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Sat, 4 Feb 2012 10:42:07 +0000 (11:42 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoFixed MSVC issues
Simon Rit [Fri, 3 Feb 2012 17:30:06 +0000 (18:30 +0100)]
Fixed MSVC issues

12 years agoFixed issue when the package is called from another directory
Simon Rit [Fri, 3 Feb 2012 17:14:34 +0000 (18:14 +0100)]
Fixed issue when the package is called from another directory

12 years agoCorrect bug when opening non 3D vector field
Vivien Delmon [Fri, 3 Feb 2012 12:22:57 +0000 (13:22 +0100)]
Correct bug when opening non 3D vector field

- vvImageReader was opening vector field of nD vectors with the itk 3D
  reader. Now we open the vector field with the appropriate itk reader
  and then convert it to 3D vectors which are the only one supported by
  vv.

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 3 Feb 2012 07:24:18 +0000 (08:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:18:30 +0000 (08:18 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoremove tools (now in tests_dav)
David Sarrut [Fri, 3 Feb 2012 07:17:46 +0000 (08:17 +0100)]
remove tools (now in tests_dav)

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:13:46 +0000 (08:13 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years ago remove clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:11:34 +0000 (08:11 +0100)]
 remove clitkExtractLymphStations

12 years ago add clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:10:40 +0000 (08:10 +0100)]
 add clitkExtractLymphStations

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:06:43 +0000 (08:06 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:57:11 +0000 (07:57 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoMoved from repository clitk to clitk.private/deprecated
David Sarrut [Fri, 3 Feb 2012 06:53:55 +0000 (07:53 +0100)]
Moved from repository clitk to clitk.private/deprecated

12 years agocorrect fuzzyMapOnlyFlag
David Sarrut [Fri, 3 Feb 2012 06:52:24 +0000 (07:52 +0100)]
correct fuzzyMapOnlyFlag

12 years agoPrevious warning fix introduced a bug. Fixed
Simon Rit [Thu, 2 Feb 2012 17:05:17 +0000 (18:05 +0100)]
Previous warning fix introduced a bug. Fixed

12 years agoremove tools (now in tests_dav)
David Sarrut [Thu, 2 Feb 2012 16:06:04 +0000 (17:06 +0100)]
remove tools (now in tests_dav)

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 16:03:43 +0000 (17:03 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 16:01:20 +0000 (17:01 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:44:55 +0000 (15:44 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoMoved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:29:44 +0000 (15:29 +0100)]
Moved from repository clitk to clitk.private/tests_dav

12 years agoAdd ROI tab
David Sarrut [Thu, 2 Feb 2012 08:39:08 +0000 (09:39 +0100)]
Add ROI tab

12 years agoFirst version of new ROI tool (the goal is to put it into the main tab and allow...
David Sarrut [Thu, 2 Feb 2012 08:38:45 +0000 (09:38 +0100)]
First version of new ROI tool (the goal is to put it into the main tab and allow dcm-rt-struct to be loaded)

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 1 Feb 2012 06:20:06 +0000 (07:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoUpdate CMakeLists after moving tools to deprecated
Simon Rit [Tue, 31 Jan 2012 19:08:06 +0000 (20:08 +0100)]
Update CMakeLists after moving tools to deprecated

12 years agoMoved from repository clitk to clitk.private/deprecated
Simon Rit [Tue, 31 Jan 2012 18:50:43 +0000 (19:50 +0100)]
Moved from repository clitk to clitk.private/deprecated

12 years agoStop rebuilding vv.o everytime cmake is executed. Only do it when
Simon Rit [Mon, 30 Jan 2012 13:32:05 +0000 (14:32 +0100)]
Stop rebuilding vv.o everytime cmake is executed. Only do it when
vv/CMakeLists.txt is newer than vvToolsList.h

12 years agofusion and image colormaps are now equivalent
Romulo Pinho [Fri, 27 Jan 2012 15:31:09 +0000 (16:31 +0100)]
fusion and image colormaps are now equivalent

- changed value range to (1, 1)

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 27 Jan 2012 15:09:49 +0000 (16:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agocorrected bug in fusion opacity with double values
Romulo Pinho [Fri, 27 Jan 2012 15:09:09 +0000 (16:09 +0100)]
corrected bug in fusion opacity with double values

12 years agocorrected bug in fusion with double values
Romulo Pinho [Fri, 27 Jan 2012 15:05:06 +0000 (16:05 +0100)]
corrected bug in fusion with double values

12 years agobug in mhd 4D creation
Romulo Pinho [Thu, 26 Jan 2012 14:35:00 +0000 (15:35 +0100)]
bug in mhd 4D creation

12 years agoComposeVF with type 0 as default
Romulo Pinho [Thu, 26 Jan 2012 13:06:44 +0000 (14:06 +0100)]
ComposeVF with type 0 as default

12 years agocorrection in ComposeVF options
Romulo Pinho [Thu, 26 Jan 2012 13:05:51 +0000 (14:05 +0100)]
correction in ComposeVF options

12 years agoaccepts suffix for 4D mhd creation
Romulo Pinho [Thu, 26 Jan 2012 12:46:11 +0000 (13:46 +0100)]
accepts suffix for 4D mhd creation

12 years agochanges in CoeffsToDVF interface
Romulo Pinho [Wed, 25 Jan 2012 14:47:22 +0000 (15:47 +0100)]
changes in CoeffsToDVF interface

- affected tools...

12 years agonew tool: clitkCoeffsToDVF
Romulo Pinho [Wed, 25 Jan 2012 14:46:23 +0000 (15:46 +0100)]
new tool: clitkCoeffsToDVF

- converts a BLUT-coefficient image to a DVF

12 years agomore robust clitkExtractLung
Romulo Pinho [Tue, 24 Jan 2012 13:50:43 +0000 (14:50 +0100)]
more robust clitkExtractLung

- quits with exception when no seed is found for trachea

12 years agorefactoring...
Romulo Pinho [Thu, 19 Jan 2012 16:51:00 +0000 (17:51 +0100)]
refactoring...

- Put coeff to dvf function in separate file, as a global function
- Changed affected files/classes

12 years agoimage warping using B-Spline coefficients
Romulo Pinho [Thu, 19 Jan 2012 16:39:42 +0000 (17:39 +0100)]
image warping using B-Spline coefficients

- uses the resolution of the input image for the output

12 years agoInvert VF from B-Spline coefficients
Romulo Pinho [Wed, 18 Jan 2012 17:28:16 +0000 (18:28 +0100)]
Invert VF from B-Spline coefficients

- Interpolate VF first, from coeffs, using --like image

12 years agoVF composition with BSpline coefficients
Romulo Pinho [Wed, 18 Jan 2012 16:51:04 +0000 (17:51 +0100)]
VF composition with BSpline coefficients

- output resolution taken from --like image

12 years agoinvert Vf on given image grid with resampler
Romulo Pinho [Tue, 10 Jan 2012 15:36:21 +0000 (16:36 +0100)]
invert Vf on given image grid with resampler

- linear interpolation (itk resampler's default)
- undoes previous version

12 years agoinvert VF on given image grid
Romulo Pinho [Tue, 10 Jan 2012 14:18:12 +0000 (15:18 +0100)]
invert VF on given image grid

- with --like option

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 5 Jan 2012 14:44:12 +0000 (15:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoAdapted crop for vector fields with partial specialization to generate
Simon Rit [Wed, 4 Jan 2012 15:48:10 +0000 (16:48 +0100)]
Adapted crop for vector fields with partial specialization to generate
exceptions for AutoCrop of VF

12 years agoProvide ADD_DEFAULT_VEC_IMAGE_TYPES for generic VF filters
Simon Rit [Wed, 4 Jan 2012 15:47:51 +0000 (16:47 +0100)]
Provide ADD_DEFAULT_VEC_IMAGE_TYPES for generic VF filters

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 4 Jan 2012 14:53:54 +0000 (15:53 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoBUG Don't try to change the VF color on cancel.
Vivien Delmon [Wed, 28 Dec 2011 13:27:46 +0000 (14:27 +0100)]
BUG Don't try to change the VF color on cancel.

- Test the validity of the color returned by the QColorDialog before
  changing the VF color.

12 years agoAdd Overlay properties to SaveState / ReadState
Vivien Delmon [Tue, 27 Dec 2011 14:49:12 +0000 (15:49 +0100)]
Add Overlay properties to SaveState / ReadState

- Use vvSlicerManagers to Get/Set Overlay properties.

12 years agoAdd Fusion properties to SaveState / ReadState
Vivien Delmon [Tue, 27 Dec 2011 14:35:44 +0000 (15:35 +0100)]
Add Fusion properties to SaveState / ReadState

- Add constness on QTreeWidgetItem.
- Use vvSlicerManagers to Get/Set Fusion properties.