]> Creatis software - clitk.git/log
clitk.git
13 years agoAdd a clitk version of itkPasteImageFilter because, with itkv4, there is a new Verify...
David Sarrut [Thu, 28 Jul 2011 09:42:48 +0000 (11:42 +0200)]
Add a clitk version of itkPasteImageFilter because, with itkv4, there is a new VerifyInputInformation function that prevent filter to be used with images having different physical space, while I want to do that.

13 years agoChange reading. Add possibility to update dicom info (before writing dicom)
David Sarrut [Wed, 27 Jul 2011 09:49:05 +0000 (11:49 +0200)]
Change reading. Add possibility to update dicom info (before writing dicom)

13 years agoSimplify (!) DicomRT reading. Store Reader to be able to write later.
David Sarrut [Wed, 27 Jul 2011 09:48:30 +0000 (11:48 +0200)]
Simplify (!) DicomRT reading. Store Reader to be able to write later.

13 years agoReplace ListOfROI (vector) by MapOfROI to avoid ambiguity between the ROI number...
David Sarrut [Wed, 27 Jul 2011 09:44:13 +0000 (11:44 +0200)]
Replace ListOfROI (vector) by MapOfROI to avoid ambiguity between the ROI number and the index.
Remplace GetROI with GetROIFromROINumber

13 years agoReplace ListOfROI (vector) by MapOfROI to avoid ambiguity between the ROI number...
David Sarrut [Wed, 27 Jul 2011 09:43:33 +0000 (11:43 +0200)]
Replace ListOfROI (vector) by MapOfROI to avoid ambiguity between the ROI number and the index

13 years agoChange GetROI by GetROIFromROINumber
David Sarrut [Wed, 27 Jul 2011 09:42:43 +0000 (11:42 +0200)]
Change GetROI by GetROIFromROINumber

13 years agoIndicate that --radius option is multiple. User can set one radius by dimension
David Sarrut [Wed, 27 Jul 2011 09:41:47 +0000 (11:41 +0200)]
Indicate that --radius option is multiple. User can set one radius by dimension

13 years agoRemove fucking windows ^M
David Sarrut [Wed, 27 Jul 2011 09:41:03 +0000 (11:41 +0200)]
Remove fucking windows ^M

13 years agoUpdate supports & stations 3A,3P
David Sarrut [Mon, 25 Jul 2011 12:49:25 +0000 (14:49 +0200)]
Update supports & stations 3A,3P

13 years agoAdd clitkDicomRTStruct2Image and clitkImage2DicomRTStruct
David Sarrut [Mon, 25 Jul 2011 12:48:46 +0000 (14:48 +0200)]
Add clitkDicomRTStruct2Image and clitkImage2DicomRTStruct

13 years agoAdd clitkImage2DicomRTStruct executable to convert a binary image into a dicom-rt...
David Sarrut [Mon, 25 Jul 2011 08:28:01 +0000 (10:28 +0200)]
Add clitkImage2DicomRTStruct executable to convert a binary image into a dicom-rt struct

13 years agoAdd clitkImage2DicomRTStructFilter to convert an image into a dicom-rt-struct
David Sarrut [Mon, 25 Jul 2011 08:27:28 +0000 (10:27 +0200)]
Add clitkImage2DicomRTStructFilter to convert an image into a dicom-rt-struct

13 years agoRename clitkDicomRT_ROI_ConvertToImageFilter into clitkDicomRTStruct2ImageFilter
David Sarrut [Mon, 25 Jul 2011 08:27:00 +0000 (10:27 +0200)]
Rename clitkDicomRT_ROI_ConvertToImageFilter into clitkDicomRTStruct2ImageFilter

13 years agoAdd Write function (still to be defined)
David Sarrut [Mon, 25 Jul 2011 08:26:02 +0000 (10:26 +0200)]
Add Write function (still to be defined)

13 years agoRename clitkDicomRTStruct2BinaryImage in clitkDicomRTStruct2Image
David Sarrut [Mon, 25 Jul 2011 07:37:31 +0000 (09:37 +0200)]
Rename clitkDicomRTStruct2BinaryImage in clitkDicomRTStruct2Image

13 years agoRename clitkDicomRT_ROI_ConvertToImageFilter into clitkDicomRTStruct2ImageFilter
David Sarrut [Mon, 25 Jul 2011 07:36:25 +0000 (09:36 +0200)]
Rename clitkDicomRT_ROI_ConvertToImageFilter into clitkDicomRTStruct2ImageFilter

13 years agoAdd RemoveTag
David Sarrut [Mon, 25 Jul 2011 07:18:36 +0000 (09:18 +0200)]
Add RemoveTag

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Mon, 25 Jul 2011 07:17:54 +0000 (09:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd SliceBySliceSetBackgroundFromPoints, GetMinMaxBoundary, FillRegionWithValue
David Sarrut [Mon, 25 Jul 2011 07:15:47 +0000 (09:15 +0200)]
Add SliceBySliceSetBackgroundFromPoints, GetMinMaxBoundary, FillRegionWithValue

13 years agoChange 3 by ImageDimension
David Sarrut [Mon, 25 Jul 2011 07:14:37 +0000 (09:14 +0200)]
Change 3 by ImageDimension

13 years agoobsolete since the user manually update his repo
mpech [Fri, 22 Jul 2011 15:23:24 +0000 (17:23 +0200)]
obsolete since the user manually update his repo

13 years agoThe data repository must be cloned and pulled by the user
mpech [Fri, 22 Jul 2011 15:05:17 +0000 (17:05 +0200)]
The data repository must be cloned and pulled by the user

13 years agocorrections for RPATH in clitk's make install
Romulo Pinho [Thu, 21 Jul 2011 12:28:41 +0000 (14:28 +0200)]
corrections for RPATH in clitk's make install

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Thu, 21 Jul 2011 09:18:46 +0000 (11:18 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosmall changes in scripts
Romulo Pinho [Thu, 21 Jul 2011 09:18:15 +0000 (11:18 +0200)]
small changes in scripts

13 years agomake install clitk (only what was built)
Romulo Pinho [Thu, 21 Jul 2011 09:17:28 +0000 (11:17 +0200)]
make install clitk (only what was built)

13 years agonightly start time is only needed when scripting.
mpech [Thu, 21 Jul 2011 08:57:22 +0000 (10:57 +0200)]
nightly start time is only needed when scripting.
No reasons to let it here

13 years agoreplaces round by itk:Math:Round (because round not found in Msvc2008)
unknown [Wed, 20 Jul 2011 14:39:26 +0000 (16:39 +0200)]
replaces round by itk:Math:Round (because round not found in Msvc2008)
replaces uint by clitk::uint because uint not available in windows
replaces typename outside template declaration (msvc compilation error)

13 years agocreate_mhd_4D
Romulo Pinho [Mon, 18 Jul 2011 15:00:21 +0000 (17:00 +0200)]
create_mhd_4D

- avoid recusrive directory searches
+ find -maxdepth 1 ...

13 years agocompilation of clitkPadImage
Romulo Pinho [Mon, 18 Jul 2011 14:42:15 +0000 (16:42 +0200)]
compilation of clitkPadImage

13 years agoclitkExtractPatient's memory use...
Romulo Pinho [Mon, 18 Jul 2011 14:38:37 +0000 (16:38 +0200)]
clitkExtractPatient's memory use...

...has been improved by releasing intermediate image data
- special cases may still use a lot of memory, but this is an ITK issue

13 years agofine tuning clitkPadImage
Romulo Pinho [Mon, 18 Jul 2011 12:16:04 +0000 (14:16 +0200)]
fine tuning clitkPadImage

13 years agocorrections in padding tool
Romulo Pinho [Mon, 18 Jul 2011 11:41:15 +0000 (13:41 +0200)]
corrections in padding tool

13 years agoadd final opening
dsarrut [Tue, 12 Jul 2011 06:16:48 +0000 (08:16 +0200)]
add final opening

13 years agoAdd initial step: select BB supports.
dsarrut [Tue, 12 Jul 2011 06:14:58 +0000 (08:14 +0200)]
Add initial step: select BB supports.

13 years agoAdd clitkAnd, SliceBySliceSetBackgroundFromSingleLine, FillRegionWithValue
dsarrut [Tue, 12 Jul 2011 06:14:17 +0000 (08:14 +0200)]
Add clitkAnd, SliceBySliceSetBackgroundFromSingleLine, FillRegionWithValue

13 years agoAdd clitkAnd, SliceBySliceSetBackgroundFromSingleLine, FillRegionWithValue
dsarrut [Tue, 12 Jul 2011 06:14:10 +0000 (08:14 +0200)]
Add clitkAnd, SliceBySliceSetBackgroundFromSingleLine, FillRegionWithValue

13 years agoAdd post limits with VertebralBody and ant limits with Sternum.
dsarrut [Tue, 12 Jul 2011 06:13:24 +0000 (08:13 +0200)]
Add post limits with VertebralBody and ant limits with Sternum.

13 years agoadd final opening
dsarrut [Tue, 12 Jul 2011 06:12:47 +0000 (08:12 +0200)]
add final opening

13 years agoadd final opening
dsarrut [Tue, 12 Jul 2011 06:12:39 +0000 (08:12 +0200)]
add final opening

13 years agoAdd final open
dsarrut [Tue, 12 Jul 2011 06:12:20 +0000 (08:12 +0200)]
Add final open

13 years agoAdd initialisation to avoid warning
dsarrut [Tue, 12 Jul 2011 06:11:29 +0000 (08:11 +0200)]
Add initialisation to avoid warning

13 years agoChange default (bug): CCLSelection is off by default (we do not consider a single...
dsarrut [Tue, 12 Jul 2011 06:11:14 +0000 (08:11 +0200)]
Change default (bug): CCLSelection is off by default (we do not consider a single Connected Component Label in the object)

13 years agoCorrect bug: when crop is only performed along a single direction.
dsarrut [Tue, 12 Jul 2011 06:10:21 +0000 (08:10 +0200)]
Correct bug: when crop is only performed along a single direction.

13 years agoadd initialisation to avoid warning
dsarrut [Tue, 12 Jul 2011 06:09:20 +0000 (08:09 +0200)]
add initialisation to avoid warning

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Fri, 8 Jul 2011 12:22:58 +0000 (14:22 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

Conflicts:
tests/tools/CMakeLists.txt

13 years agotests for clitkGet*
mpech [Fri, 8 Jul 2011 12:19:23 +0000 (14:19 +0200)]
tests for clitkGet*

13 years agoupdate of TOOLS_PATH in tests
mpech [Fri, 8 Jul 2011 12:06:21 +0000 (14:06 +0200)]
update of TOOLS_PATH in tests

13 years agotests for getSpacing and getInfo
mpech [Fri, 8 Jul 2011 11:13:31 +0000 (13:13 +0200)]
tests for getSpacing and getInfo

13 years agogetSpacing
mpech [Fri, 8 Jul 2011 10:51:44 +0000 (12:51 +0200)]
getSpacing

13 years agoAdded FindGengetopt.cmake which compiles gengetopt if not installed.
Simon Rit [Thu, 7 Jul 2011 13:03:26 +0000 (15:03 +0200)]
Added FindGengetopt.cmake which compiles gengetopt if not installed.
Also upgraded cmake version required to 2.8 because was solving issues
regarding ADD_DEFINITION with quoted strings

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Thu, 7 Jul 2011 13:02:04 +0000 (15:02 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoPadding tool
Romulo Pinho [Thu, 7 Jul 2011 11:27:07 +0000 (13:27 +0200)]
Padding tool

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Wed, 6 Jul 2011 11:39:26 +0000 (13:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Wed, 6 Jul 2011 11:35:37 +0000 (13:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agooptional opening after 1st step in ExtractPatient
Romulo Pinho [Wed, 6 Jul 2011 11:27:26 +0000 (13:27 +0200)]
optional opening after 1st step in ExtractPatient

- controlled by the radius given on the cmd line

13 years agomacro for SET_IF_NOT_SET
mpech [Wed, 6 Jul 2011 09:43:25 +0000 (11:43 +0200)]
macro for SET_IF_NOT_SET

13 years agoAllow submit to other dashboard than vv's dashboard
mpech [Wed, 6 Jul 2011 09:05:29 +0000 (11:05 +0200)]
Allow submit to other dashboard than vv's dashboard

13 years agoclitkImageInfo tests
mpech [Fri, 1 Jul 2011 13:30:24 +0000 (15:30 +0200)]
clitkImageInfo tests

13 years agoobsolete dartConfig file
mpech [Fri, 1 Jul 2011 10:53:57 +0000 (12:53 +0200)]
obsolete dartConfig file

13 years agorenaming clitk_data_path in clitk_test_data_path
mpech [Wed, 29 Jun 2011 16:02:26 +0000 (18:02 +0200)]
renaming clitk_data_path in clitk_test_data_path
"factorizing" git repo in CTestConfig

13 years agopublishing to vv's dashboard
mpech [Wed, 29 Jun 2011 15:29:36 +0000 (17:29 +0200)]
publishing to vv's dashboard

13 years agotesting with a simple executable
mpech [Wed, 29 Jun 2011 12:00:19 +0000 (14:00 +0200)]
testing with a simple executable

13 years agofetch data pull or clone
mpech [Wed, 29 Jun 2011 11:58:55 +0000 (13:58 +0200)]
fetch data pull or clone

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Wed, 29 Jun 2011 11:34:41 +0000 (13:34 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoscripts to pull data
mpech [Wed, 29 Jun 2011 11:32:57 +0000 (13:32 +0200)]
scripts to pull data
todo : pull instead of clone if it already exists

13 years agoModification for nightly builds
mpech [Wed, 29 Jun 2011 11:31:10 +0000 (13:31 +0200)]
Modification for nightly builds

13 years agoAdded mha next to mhd (similar but in one file)
Simon Rit [Wed, 29 Jun 2011 10:00:39 +0000 (12:00 +0200)]
Added mha next to mhd (similar but in one file)

13 years agoMinor gui text corrections
Simon Rit [Tue, 28 Jun 2011 07:41:19 +0000 (09:41 +0200)]
Minor gui text corrections

13 years agotransform_grid option was not working for flips
Simon Rit [Mon, 27 Jun 2011 16:53:16 +0000 (18:53 +0200)]
transform_grid  option was not working for flips

13 years agoFix for bug Bug #670: closing and opening do the same as successive
Simon Rit [Mon, 27 Jun 2011 11:11:47 +0000 (13:11 +0200)]
Fix for bug Bug #670: closing and opening do the same as successive
erosion/dilation

13 years agoRemoved call to UpdateOrientation in SetFusion and SetOverlay to avoid
Simon Rit [Mon, 27 Jun 2011 09:48:47 +0000 (11:48 +0200)]
Removed call to UpdateOrientation in SetFusion and SetOverlay to avoid
changing slice when reloading.

13 years agoNo need for typename outside template declarations (compiling error on
Simon Rit [Mon, 27 Jun 2011 08:02:22 +0000 (10:02 +0200)]
No need for typename outside template declarations (compiling error on
        msvc++)

13 years agoAllowed arithmetic operations between 2 inputs even if they don't have the same spacing.
Simon Rit [Mon, 27 Jun 2011 08:01:30 +0000 (10:01 +0200)]
Allowed arithmetic operations between 2 inputs even if they don't have the same spacing.

13 years agoAdded HaveSameSize
Simon Rit [Mon, 27 Jun 2011 08:00:25 +0000 (10:00 +0200)]
Added HaveSameSize

13 years agoPortability issue
Simon Rit [Thu, 23 Jun 2011 17:46:07 +0000 (19:46 +0200)]
Portability issue

13 years agoAdded --transform_grid which uses input->GetDirection
Simon Rit [Thu, 23 Jun 2011 17:44:22 +0000 (19:44 +0200)]
Added --transform_grid which uses input->GetDirection
(output->GetDirection is identity) and transform matrix
to determine the output grid.

13 years agoInverse transform matrix to be consistent witk ITK (see longer comment in vvImageRead...
Simon Rit [Thu, 23 Jun 2011 17:41:53 +0000 (19:41 +0200)]
Inverse transform matrix to be consistent witk ITK (see longer comment in vvImageReader.cxx)

13 years agoAccount for itk origin when using itk direction to build vv transform
Simon Rit [Thu, 23 Jun 2011 11:16:58 +0000 (13:16 +0200)]
Account for itk origin when using itk direction to build vv transform

13 years agoAdded ExtractBonesLower2 and FillingLevel options
Simon Rit [Wed, 22 Jun 2011 08:35:11 +0000 (10:35 +0200)]
Added ExtractBonesLower2 and FillingLevel options

13 years agoCopy pasted common.sh code
Simon Rit [Wed, 22 Jun 2011 08:33:44 +0000 (10:33 +0200)]
Copy pasted common.sh code

13 years agosimple tool to create an image with a sphere
Romulo Pinho [Tue, 21 Jun 2011 18:12:50 +0000 (20:12 +0200)]
simple tool to create an image with a sphere

- still to be improved

13 years agojacobian image filter
Romulo Pinho [Tue, 21 Jun 2011 18:10:28 +0000 (20:10 +0200)]
jacobian image filter

- calculate the jacobian of a vector field

13 years agomoved $CLITK3/vv/scripts to $CLITK3/scripts
Romulo Pinho [Tue, 21 Jun 2011 14:00:31 +0000 (16:00 +0200)]
moved $CLITK3/vv/scripts to $CLITK3/scripts

- added create_midP_masks.sh

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Mon, 20 Jun 2011 13:30:43 +0000 (15:30 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agouse of find_xxx to find googleframework and data paths
mpech [Mon, 20 Jun 2011 13:29:07 +0000 (15:29 +0200)]
use of find_xxx to find googleframework and data paths

13 years agoMissing include
Simon Rit [Mon, 20 Jun 2011 08:48:47 +0000 (10:48 +0200)]
Missing include

13 years agouint is not a type
Simon Rit [Sat, 18 Jun 2011 16:21:53 +0000 (18:21 +0200)]
uint is not a type

13 years agoFix for bug #274: move ExtractSlices definition in .h
Simon Rit [Sat, 18 Jun 2011 16:07:14 +0000 (18:07 +0200)]
Fix for bug #274: move ExtractSlices definition in .h

13 years agoOups, wrong exception message
Simon Rit [Fri, 17 Jun 2011 16:53:45 +0000 (18:53 +0200)]
Oups, wrong exception message

13 years agoResample is not robust to i/o spacings with different signs => launch
Simon Rit [Fri, 17 Jun 2011 16:40:45 +0000 (18:40 +0200)]
Resample is not robust to i/o spacings with different signs => launch
exception

13 years agoThe order of the libraries seemed to cause problem. Changed it...
Simon Rit [Thu, 16 Jun 2011 15:13:33 +0000 (17:13 +0200)]
The order of the libraries seemed to cause problem. Changed it...

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Thu, 16 Jun 2011 09:50:44 +0000 (11:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoUse Qt variables in vv/CMakeList.txt
Vivien Delmon [Thu, 16 Jun 2011 09:48:39 +0000 (11:48 +0200)]
Use Qt variables in vv/CMakeList.txt

Use ${QT_QTNETWORK_LIBRARY} instead of QtNetwork that didn't worked with
window Qt library named QtNetwork4.lib

13 years agoorientation change should not change T slice
Romulo Pinho [Wed, 15 Jun 2011 15:11:07 +0000 (17:11 +0200)]
orientation change should not change T slice

- time never changes when just the image orientation is changed...

13 years agoFix for bug #609
Simon Rit [Wed, 15 Jun 2011 10:43:05 +0000 (12:43 +0200)]
Fix for bug #609

13 years agoChange key for going to coordinate system origin. Now CTRL+g
Simon Rit [Wed, 15 Jun 2011 08:48:08 +0000 (10:48 +0200)]
Change key for going to coordinate system origin. Now CTRL+g

13 years agoRemoved unused text variable
Simon Rit [Wed, 15 Jun 2011 08:47:36 +0000 (10:47 +0200)]
Removed unused text variable

13 years agoQtNetwork is a required dependency of vvRegisterForm
Simon Rit [Tue, 14 Jun 2011 13:36:30 +0000 (15:36 +0200)]
QtNetwork is a required dependency of vvRegisterForm

13 years agoObsolete header replaced with correct header
mpech [Tue, 14 Jun 2011 11:46:49 +0000 (13:46 +0200)]
Obsolete header replaced with correct header