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Creatis software - clitk.git/log
srit [Wed, 30 Mar 2011 10:10:05 +0000 (10:10 +0000)]
Windows compiling errors (ambiguous call to pow and variable in switch)
dsarrut [Tue, 29 Mar 2011 14:26:56 +0000 (14:26 +0000)]
Add EPID conversion (2^16 - value)/alpha
delmon [Tue, 29 Mar 2011 13:14:10 +0000 (13:14 +0000)]
From gdcm 1.x to gdcm 2.0
srit [Tue, 29 Mar 2011 09:21:43 +0000 (09:21 +0000)]
Removed debug stuff
srit [Tue, 29 Mar 2011 09:10:17 +0000 (09:10 +0000)]
Use QSharedPointers for vvROIActors
srit [Tue, 29 Mar 2011 09:06:23 +0000 (09:06 +0000)]
Error in loop for removing actors in destructor
srit [Tue, 29 Mar 2011 08:47:14 +0000 (08:47 +0000)]
Rounding errors in display extent of overlay, fusion and vf.
dsarrut [Mon, 28 Mar 2011 14:55:02 +0000 (14:55 +0000)]
Add clitkDD for debug
dsarrut [Mon, 28 Mar 2011 14:52:58 +0000 (14:52 +0000)]
add SliceBySliceBuildLineSegmentAccordingToExtremaPosition
srit [Mon, 28 Mar 2011 13:51:00 +0000 (13:51 +0000)]
Use smart pointers for vvSlicers
srit [Mon, 28 Mar 2011 13:29:49 +0000 (13:29 +0000)]
Memory leak hunt: vvBinaryImageOverlayActor vvImageContour vVImageReader are now itk::LightObject, use QSharedPointer in vvToolStructureSetManager
srit [Mon, 28 Mar 2011 13:19:00 +0000 (13:19 +0000)]
Useless to clear in destructor
dsarrut [Mon, 28 Mar 2011 10:45:48 +0000 (10:45 +0000)]
Romulo:
- Tool now supports files in pts (Jef) and txt (VV) formats (-t/--type option)
srit [Mon, 28 Mar 2011 08:13:11 +0000 (08:13 +0000)]
Account for transform when updating display extent of vf, fusion and overlay
srit [Mon, 28 Mar 2011 07:37:25 +0000 (07:37 +0000)]
Fix for bug #274: move JoinSlices definition in .h
dsarrut [Mon, 28 Mar 2011 05:36:21 +0000 (05:36 +0000)]
do not need clitkSegmentationUtils
srit [Sun, 27 Mar 2011 00:41:47 +0000 (00:41 +0000)]
Last errors
srit [Sat, 26 Mar 2011 22:57:22 +0000 (22:57 +0000)]
Errors in previous commit
srit [Sat, 26 Mar 2011 22:56:32 +0000 (22:56 +0000)]
Temp fix (see http://kingkong.grid.creatis.insa-lyon.fr:9002/issues/274)
srit [Sat, 26 Mar 2011 22:55:10 +0000 (22:55 +0000)]
Another lrint
srit [Sat, 26 Mar 2011 21:46:01 +0000 (21:46 +0000)]
Removed warning (same name used twice for layout widgets)
srit [Sat, 26 Mar 2011 21:43:25 +0000 (21:43 +0000)]
Replace rint with portable function
srit [Sat, 26 Mar 2011 21:39:36 +0000 (21:39 +0000)]
Correct last commit
srit [Sat, 26 Mar 2011 21:21:13 +0000 (21:21 +0000)]
MSVC++ seems a bit more strict than gcc with c++...
srit [Fri, 25 Mar 2011 17:35:52 +0000 (17:35 +0000)]
Put mMesh in smart pointer
srit [Fri, 25 Mar 2011 14:21:11 +0000 (14:21 +0000)]
More vtkSmartPointer
srit [Fri, 25 Mar 2011 14:20:14 +0000 (14:20 +0000)]
Delete widget first, the image data after
dsarrut [Fri, 25 Mar 2011 13:58:48 +0000 (13:58 +0000)]
Romulo:
Add --output (-o) option. stdout is now used for verbose mode only.
srit [Fri, 25 Mar 2011 13:39:53 +0000 (13:39 +0000)]
Attempt to remove some leaks. DicomRT_Contour, DicomRT_ROI and DicomRT_StructureSet are now itk::LightObjects with private constructors
dsarrut [Fri, 25 Mar 2011 13:30:53 +0000 (13:30 +0000)]
Romulo:
A couple of corrections and more debug info...
dsarrut [Fri, 25 Mar 2011 13:15:28 +0000 (13:15 +0000)]
Romulo:
- new tool: clitkTransformLandmarks
Trasnform a set of landmarks with the given 4x4 matrix. Output to stdout.
srit [Fri, 25 Mar 2011 12:57:39 +0000 (12:57 +0000)]
Removed old file from compilation list
srit [Fri, 25 Mar 2011 12:52:10 +0000 (12:52 +0000)]
Removed old files, now in common
dsarrut [Fri, 25 Mar 2011 09:30:51 +0000 (09:30 +0000)]
clitkGammaIndex uses vtkCellLocator
grevillot [Fri, 25 Mar 2011 06:57:11 +0000 (06:57 +0000)]
*** empty log message ***
delmon [Thu, 24 Mar 2011 16:45:49 +0000 (16:45 +0000)]
Improvement of clitkGammaIndex.cxx by changing distance computation class.
srit [Thu, 24 Mar 2011 16:24:59 +0000 (16:24 +0000)]
Put mDefaultLUTColor in smart pointer to avoid memory leak
dsarrut [Thu, 24 Mar 2011 15:46:41 +0000 (15:46 +0000)]
Correct VFResample (now should work)
srit [Thu, 24 Mar 2011 13:45:13 +0000 (13:45 +0000)]
h now hides corner annotations as well
srit [Thu, 24 Mar 2011 13:36:35 +0000 (13:36 +0000)]
h now hides corner annotations as well
delmon [Thu, 24 Mar 2011 10:14:29 +0000 (10:14 +0000)]
[BUG] Change to signed distance.
dsarrut [Thu, 24 Mar 2011 07:33:42 +0000 (07:33 +0000)]
Add S3A, correct minors for S7
dsarrut [Thu, 24 Mar 2011 07:32:08 +0000 (07:32 +0000)]
Add reference count for list of loaded image in the afdb
dsarrut [Thu, 24 Mar 2011 07:30:49 +0000 (07:30 +0000)]
Add object uniqueCCL flag for SliceBySliceRelativePosition
dsarrut [Thu, 24 Mar 2011 07:29:59 +0000 (07:29 +0000)]
Add "NotLeftTo" relative position and other
delmon [Wed, 23 Mar 2011 13:38:26 +0000 (13:38 +0000)]
pgueth:
+ Add clitkGammaIndex computation.
dsarrut [Tue, 22 Mar 2011 16:55:12 +0000 (16:55 +0000)]
Romulo:
- Corrected bug when the size of the dicom template should be used as the reference for the resampling, instead of the spacing
- Added a command line option to for the size as the reference (--useSizeAsReference - default=off)
dsarrut [Tue, 22 Mar 2011 16:25:50 +0000 (16:25 +0000)]
Romulo:
- Corrected bug when the size of the dicom template should be used as the reference for the resampling, instead of the spacing
- Added a command line option to for the size as the reference (--useSizeAsReference - default=off)
dsarrut [Tue, 22 Mar 2011 15:51:10 +0000 (15:51 +0000)]
New icon for the MIP tool
dsarrut [Tue, 22 Mar 2011 15:50:39 +0000 (15:50 +0000)]
Put this tool in the tools menu (remove from experimental)
Display an error message for 2D images
dsarrut [Tue, 22 Mar 2011 15:49:52 +0000 (15:49 +0000)]
Correct bug in the filename when the same filename is used
dsarrut [Tue, 22 Mar 2011 15:49:24 +0000 (15:49 +0000)]
*** empty log message ***
dsarrut [Tue, 22 Mar 2011 15:48:15 +0000 (15:48 +0000)]
Remove old MaximumIntensityProjection (menu and callback)
dsarrut [Tue, 22 Mar 2011 15:47:16 +0000 (15:47 +0000)]
Remove old MaximumIntensityProjection
delmon [Tue, 22 Mar 2011 10:07:31 +0000 (10:07 +0000)]
Adapt vv RPATH to remove useless building path.
Install vv in bin subdirectory.
delmon [Tue, 22 Mar 2011 10:05:42 +0000 (10:05 +0000)]
Remove vtkHybrid from clitkCommon and add it only when it is needed
(clitkRTStruct).
srit [Mon, 21 Mar 2011 17:45:11 +0000 (17:45 +0000)]
Fixed bugs in libstatgrab
srit [Mon, 21 Mar 2011 16:09:05 +0000 (16:09 +0000)]
Romulo:
- set Link/Link All functionality
+ when linking two images: take the one in the first combo box (left) as the reference for viewing adjustments
+ when linking all images: take the last manipulated image as the reference. The last manipulated image is the one with which the user last interacted using the mouse (mouseclick, mousewheel, but NOT mousemove)
srit [Mon, 21 Mar 2011 15:27:18 +0000 (15:27 +0000)]
Removed cmake memory option
srit [Sun, 20 Mar 2011 20:01:44 +0000 (20:01 +0000)]
MSVC++ complains that the exception is not used, put debugging message back
srit [Sun, 20 Mar 2011 20:00:49 +0000 (20:00 +0000)]
Fixed compiling error by MSVC++
srit [Sun, 20 Mar 2011 20:00:13 +0000 (20:00 +0000)]
Corrected bug when opening unexisting file (introduced by myself in version 1.52)
dsarrut [Fri, 18 Mar 2011 12:50:29 +0000 (12:50 +0000)]
Update panel height
dsarrut [Fri, 18 Mar 2011 12:49:55 +0000 (12:49 +0000)]
Check image size before performing operation
dsarrut [Fri, 18 Mar 2011 12:49:25 +0000 (12:49 +0000)]
Resample tool now use new resampleImage class (use the right number of thread)
dsarrut [Fri, 18 Mar 2011 12:48:44 +0000 (12:48 +0000)]
Add new resampleImageLib
dsarrut [Fri, 18 Mar 2011 12:48:26 +0000 (12:48 +0000)]
Correct tool name
dsarrut [Fri, 18 Mar 2011 12:48:06 +0000 (12:48 +0000)]
Remove debug verbose
dsarrut [Fri, 18 Mar 2011 12:47:51 +0000 (12:47 +0000)]
Add ResampleImage library for vv
dsarrut [Fri, 18 Mar 2011 12:47:17 +0000 (12:47 +0000)]
Add HaveSameSizeAndSpacingThan function
dsarrut [Fri, 18 Mar 2011 10:06:05 +0000 (10:06 +0000)]
slight changes to use nex clitkVFResample.ggo
dsarrut [Fri, 18 Mar 2011 10:04:24 +0000 (10:04 +0000)]
remove olf clitkImageResample (keep clitkResampleImage)
dsarrut [Fri, 18 Mar 2011 10:02:39 +0000 (10:02 +0000)]
first version (copy of old clitkImageResample.ggo)
dsarrut [Fri, 18 Mar 2011 10:00:40 +0000 (10:00 +0000)]
remove unused code for imageresample. The "true" one is clitkResampleImage and not clitkImageResample
srit [Thu, 17 Mar 2011 18:39:09 +0000 (18:39 +0000)]
Display values of two images and their difference in the same way instead of rounding to the second decimal
srit [Thu, 17 Mar 2011 14:43:08 +0000 (14:43 +0000)]
Romulo:
1) Perform image resampling if the spacing of the MHD file doesn't match the slice thickness found in the reference dicom series. Use the dicom spacing as the output.
2) Remove files from the dicom series if the number of slices in the MHD doesn't match the number of files in the image (it may be smaller due to rounding of image resampling). An error is still generated if there are more slices than files, though.
- issue: VV somehow still detects all images (Open Dicom), but the number of files and the series itself are correctly read.
3) Warnings are printed in both cases above if "verbose" is enabled.
srit [Thu, 17 Mar 2011 14:42:13 +0000 (14:42 +0000)]
Romulo: changed rounding of image resampling to floor() because, from a clinical point of view, it seems to be better to miss a slice than to add information that didn't exist in the original image.
srit [Wed, 16 Mar 2011 17:19:22 +0000 (17:19 +0000)]
Attempted to fix the mess of the resample fucker wrt to setting spacing and dims
srit [Wed, 16 Mar 2011 15:02:26 +0000 (15:02 +0000)]
Added reference to bug report for previous commit
srit [Wed, 16 Mar 2011 14:57:02 +0000 (14:57 +0000)]
Force update of display extents to fix linked navigation bug + move propagation out of loop
srit [Tue, 15 Mar 2011 16:59:53 +0000 (16:59 +0000)]
Romulo: invert matrix in .mat to be consistent with mhd matrices handled by itk
srit [Tue, 15 Mar 2011 15:37:39 +0000 (15:37 +0000)]
Return nan when quering scalar value outside whole extent
srit [Tue, 15 Mar 2011 15:24:47 +0000 (15:24 +0000)]
Romulo: fixed crash on display transform for vf, overlay and fusion images
srit [Tue, 15 Mar 2011 14:58:14 +0000 (14:58 +0000)]
Romulo: fixed log file, AppendOn was missing
srit [Mon, 14 Mar 2011 23:33:51 +0000 (23:33 +0000)]
Corrected log option for portability
srit [Mon, 14 Mar 2011 23:13:13 +0000 (23:13 +0000)]
Added VF color option and corresponding button
srit [Mon, 14 Mar 2011 22:54:15 +0000 (22:54 +0000)]
Disabled NKI transform function
dsarrut [Fri, 11 Mar 2011 08:49:13 +0000 (08:49 +0000)]
small gui update
dsarrut [Fri, 11 Mar 2011 08:48:41 +0000 (08:48 +0000)]
Set the correct window/level in the spinbox when preset is enabled
dsarrut [Fri, 11 Mar 2011 08:32:29 +0000 (08:32 +0000)]
Do not compile those tests by default
dsarrut [Fri, 11 Mar 2011 07:16:06 +0000 (07:16 +0000)]
MOST IMPORTANT CHANGE IN VV SINCE YEARS !! Now MemoryUsage is displayed in blue.
dsarrut [Fri, 11 Mar 2011 07:15:27 +0000 (07:15 +0000)]
Remove "Panel" textlabel
dsarrut [Fri, 11 Mar 2011 07:14:56 +0000 (07:14 +0000)]
Display 'NA' if memory usage is not available
delmon [Thu, 10 Mar 2011 16:20:52 +0000 (16:20 +0000)]
Romulo:
- Add command-line option to set a log file for VTK and ITK messages
+ option is --log
+ file is stored as date_time.log in /tmp/vv-log for the moment
* still to find a better location, so that it works in Windows and Linux
delmon [Thu, 10 Mar 2011 16:19:33 +0000 (16:19 +0000)]
Romulo:
- Included visualization of the image's transformation interface on the main
window
- Removed panel information that preivously existed
delmon [Thu, 10 Mar 2011 16:17:56 +0000 (16:17 +0000)]
Romulo:
- Corrected bug in --noAutoCrop function, both in ggo file and source code
delmon [Thu, 10 Mar 2011 16:16:15 +0000 (16:16 +0000)]
Romulo:
- Added functionality to transform points based on the BSpline coefficients
instead of the vector field
- Added new command-line option --coeff (mutual exclusive wrt --vf)
delmon [Thu, 10 Mar 2011 16:14:11 +0000 (16:14 +0000)]
Romulo:
- Added functionality to generate the BSpline coefficients during the
registration.
- Added new command-line option --CoeffEveryN (requires --coeff and --verbose)
- see ggo file
- Created new observer class (as specified by ITK) to catch iteration events
triggered by the optmizer
dsarrut [Thu, 10 Mar 2011 16:02:04 +0000 (16:02 +0000)]
Return 0.0 if libstatgrab is not used
dsarrut [Thu, 10 Mar 2011 16:00:09 +0000 (16:00 +0000)]
Replace vvImage::Pointer with raw pointer for function