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Creatis software - clitk.git/log
Romulo Pinho [Fri, 29 Jun 2012 12:39:33 +0000 (14:39 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 29 Jun 2012 12:39:02 +0000 (14:39 +0200)]
use of elastix in mid-P scripts
David Sarrut [Fri, 29 Jun 2012 12:19:09 +0000 (14:19 +0200)]
Correct contour depth bug
David Sarrut [Fri, 29 Jun 2012 12:18:56 +0000 (14:18 +0200)]
Correct always white contour bug.
David Sarrut [Fri, 29 Jun 2012 12:02:40 +0000 (14:02 +0200)]
ROI overlay is not linearly interpolated by default
Romulo Pinho [Fri, 29 Jun 2012 08:58:49 +0000 (10:58 +0200)]
VTK compatibility
- BlendImageActor issue with legacy VTK versions
David Sarrut [Thu, 28 Jun 2012 05:36:48 +0000 (07:36 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 20 Jun 2012 16:13:37 +0000 (18:13 +0200)]
Attempt to fix the blend image actor for the new vtk release (5.10)
David Sarrut [Thu, 14 Jun 2012 13:38:03 +0000 (15:38 +0200)]
Only compute overlap if check is not set as option
David Sarrut [Thu, 14 Jun 2012 13:37:27 +0000 (15:37 +0200)]
Correct default constructor for super class
David Sarrut [Thu, 14 Jun 2012 13:36:15 +0000 (15:36 +0200)]
Add option do display required structures
David Sarrut [Thu, 14 Jun 2012 13:35:53 +0000 (15:35 +0200)]
Add CheckImage
David Sarrut [Thu, 14 Jun 2012 13:35:44 +0000 (15:35 +0200)]
Add CheckImage
David Sarrut [Thu, 14 Jun 2012 13:35:28 +0000 (15:35 +0200)]
Set contours depth at 100 to be in front of other objects
David Sarrut [Thu, 14 Jun 2012 13:35:05 +0000 (15:35 +0200)]
Slightly offset the depth of contour to be in front of the overlay
David Sarrut [Thu, 14 Jun 2012 13:34:35 +0000 (15:34 +0200)]
Correct false depth for contour
David Sarrut [Wed, 13 Jun 2012 10:38:53 +0000 (12:38 +0200)]
Remove debug
David Sarrut [Wed, 13 Jun 2012 10:38:31 +0000 (12:38 +0200)]
Remove debug comments
David Sarrut [Thu, 7 Jun 2012 13:48:52 +0000 (15:48 +0200)]
Add VerboseSlicesFlag
David Sarrut [Thu, 7 Jun 2012 13:47:49 +0000 (15:47 +0200)]
Cosmetic
David Sarrut [Thu, 7 Jun 2012 13:47:13 +0000 (15:47 +0200)]
Add RemoveNegativeIndexFromRegion function
Romulo Pinho [Fri, 25 May 2012 13:20:02 +0000 (15:20 +0200)]
kept only the "most relevant" vector conversions
Romulo Pinho [Thu, 24 May 2012 14:37:51 +0000 (16:37 +0200)]
add MHD compression to install
Romulo Pinho [Thu, 24 May 2012 14:36:25 +0000 (16:36 +0200)]
updates in calculation of motion mask
- new way of guessing initial ellipse
Romulo Pinho [Thu, 24 May 2012 14:26:37 +0000 (16:26 +0200)]
small correction in motion mask creation script
Romulo Pinho [Thu, 24 May 2012 14:24:50 +0000 (16:24 +0200)]
script to compress MHDs
- either one file or an entire directory
- directories processed recursively
Romulo Pinho [Thu, 24 May 2012 14:12:40 +0000 (16:12 +0200)]
improvement of 4D mhd creation script
Romulo Pinho [Wed, 23 May 2012 13:01:18 +0000 (15:01 +0200)]
support for multiple vector image conversions
- including image compression
Vivien Delmon [Fri, 11 May 2012 13:09:28 +0000 (15:09 +0200)]
COMP: itk4 compatibility
Romulo Pinho [Wed, 9 May 2012 13:14:02 +0000 (15:14 +0200)]
further corrections in 4D mhd creation
Romulo Pinho [Tue, 8 May 2012 11:55:58 +0000 (13:55 +0200)]
correction with compressed file names
Romulo Pinho [Tue, 8 May 2012 11:47:00 +0000 (13:47 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 7 May 2012 11:38:23 +0000 (13:38 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 7 May 2012 11:36:31 +0000 (13:36 +0200)]
Add --panel_shift option to BackProject tool
Vivien Delmon [Mon, 7 May 2012 11:33:19 +0000 (13:33 +0200)]
itkv4 migration use itk::ThreadIdType
Vivien Delmon [Mon, 7 May 2012 11:18:48 +0000 (13:18 +0200)]
remove duplicated file
Simon Rit [Mon, 7 May 2012 10:34:57 +0000 (12:34 +0200)]
Fixed Windows incompatible unistd includes
Simon Rit [Fri, 27 Apr 2012 11:09:34 +0000 (13:09 +0200)]
Extended Gate Ascii output to any pixel type
Romulo Pinho [Fri, 27 Apr 2012 09:26:02 +0000 (11:26 +0200)]
take into account compressed MHD files
Romulo Pinho [Fri, 27 Apr 2012 09:25:13 +0000 (11:25 +0200)]
option to auto-detect motion mask's initial ellipse
Romulo Pinho [Wed, 25 Apr 2012 11:40:18 +0000 (13:40 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 25 Apr 2012 11:29:48 +0000 (13:29 +0200)]
GUI options for contour statistics scripts
Simon Rit [Wed, 25 Apr 2012 11:26:13 +0000 (13:26 +0200)]
Fix local windowing: was not accounting for SliceOrientation and transforms
Romulo Pinho [Fri, 20 Apr 2012 11:16:00 +0000 (13:16 +0200)]
fine tuning fusion legend
- must not appear with overlays
- invisible by default
- disappears if fusion image is not displayed
Romulo Pinho [Fri, 20 Apr 2012 07:47:14 +0000 (09:47 +0200)]
compilation of CxImage
Romulo Pinho [Fri, 20 Apr 2012 07:30:18 +0000 (09:30 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 20 Apr 2012 07:28:56 +0000 (09:28 +0200)]
removed bug in fusion thresholding
- with arbitrary values of window/level
Simon Rit [Thu, 19 Apr 2012 16:20:10 +0000 (18:20 +0200)]
First githering option for animated gif using CxImage option
Simon Rit [Thu, 19 Apr 2012 15:09:26 +0000 (17:09 +0200)]
Create palette once and for all
Vivien Delmon [Thu, 19 Apr 2012 14:32:34 +0000 (16:32 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Thu, 19 Apr 2012 14:30:31 +0000 (16:30 +0200)]
Bug clitkAffineTransform make rotate/translate options usable separately
- Allow the use of rotate and translate alone by setting missing
parameters to 0.
Romulo Pinho [Thu, 19 Apr 2012 14:20:38 +0000 (16:20 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 19 Apr 2012 14:19:21 +0000 (16:19 +0200)]
fusion legend is now an option
Simon Rit [Thu, 19 Apr 2012 12:38:27 +0000 (14:38 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 19 Apr 2012 12:37:54 +0000 (14:37 +0200)]
Red and blue were swapped (different order between VTK and CxImage)
Vivien Delmon [Wed, 18 Apr 2012 16:08:33 +0000 (18:08 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 18 Apr 2012 16:07:55 +0000 (18:07 +0200)]
Add rotate and translate option to clitkAffineTransform
Vivien Delmon [Wed, 18 Apr 2012 14:26:40 +0000 (16:26 +0200)]
Add GetForwardAffineMatrix wrapper
Romulo Pinho [Wed, 18 Apr 2012 14:11:27 +0000 (16:11 +0200)]
image fusion now display colour legend too
- even the alpha threshold
Vivien Delmon [Wed, 18 Apr 2012 12:29:51 +0000 (14:29 +0200)]
Add GetRotationMatrix2D and GetRotationMatrix wrapper
Romulo Pinho [Tue, 17 Apr 2012 09:02:59 +0000 (11:02 +0200)]
upgrade in contour stats script
Romulo Pinho [Tue, 17 Apr 2012 08:19:16 +0000 (10:19 +0200)]
added new script to install
Romulo Pinho [Tue, 17 Apr 2012 08:05:08 +0000 (10:05 +0200)]
new script to get contour statistics
Simon Rit [Fri, 13 Apr 2012 08:16:59 +0000 (10:16 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 13 Apr 2012 08:16:37 +0000 (10:16 +0200)]
Fixed bug with extension detection in snapshots
Simon Rit [Fri, 13 Apr 2012 08:16:00 +0000 (10:16 +0200)]
Fixed uint portability issue
Romulo Pinho [Thu, 12 Apr 2012 13:14:07 +0000 (15:14 +0200)]
Crash with rigid transformation
- when current slice was outside the image extent after the transformation
Romulo Pinho [Thu, 12 Apr 2012 13:13:25 +0000 (15:13 +0200)]
Add vtkQVTK to VTK_LIBRARIES for old VTK
- fine tuning what to add when...
Vivien Delmon [Wed, 11 Apr 2012 15:51:03 +0000 (17:51 +0200)]
Add missing this->
- gcc 4.7 issue.
Vivien Delmon [Wed, 11 Apr 2012 15:47:22 +0000 (17:47 +0200)]
Add missing include of unistd.h
- gcc 4.7 standard library does not include unistd.h anymore.
Romulo Pinho [Wed, 4 Apr 2012 11:01:24 +0000 (13:01 +0200)]
Add vtkQVTK to VTK_LIBRARIES for old VTK
- linked to commit
34835ff9cb225bfa8b317683fb2b27b4f6424dc2
- updated the lowest version
Romulo Pinho [Wed, 4 Apr 2012 08:10:00 +0000 (10:10 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 4 Apr 2012 08:08:49 +0000 (10:08 +0200)]
removed --roi from VV's cmd line options
- respective code is still commented, though
David Sarrut [Fri, 30 Mar 2012 13:51:13 +0000 (15:51 +0200)]
Make new ROI Tool not experimental
David Sarrut [Fri, 30 Mar 2012 13:19:25 +0000 (15:19 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 30 Mar 2012 13:19:01 +0000 (15:19 +0200)]
Remove std::cout
David Sarrut [Fri, 30 Mar 2012 13:18:34 +0000 (15:18 +0200)]
Manage Save/Read state
David Sarrut [Fri, 30 Mar 2012 13:18:14 +0000 (15:18 +0200)]
Add GetToolCreatorFromName
David Sarrut [Fri, 30 Mar 2012 13:17:58 +0000 (15:17 +0200)]
Remove debug
David Sarrut [Fri, 30 Mar 2012 13:17:48 +0000 (15:17 +0200)]
Add ReadTools and WriteTools
David Sarrut [Fri, 30 Mar 2012 13:17:29 +0000 (15:17 +0200)]
Add RemoveActors and CopyParameters
David Sarrut [Fri, 30 Mar 2012 13:17:18 +0000 (15:17 +0200)]
Add accessors for colors
David Sarrut [Fri, 30 Mar 2012 13:16:57 +0000 (15:16 +0200)]
Add RemoveActors
David Sarrut [Fri, 30 Mar 2012 13:16:41 +0000 (15:16 +0200)]
Add RemoveActors
David Sarrut [Fri, 30 Mar 2012 13:15:50 +0000 (15:15 +0200)]
Replace * by Pointer
Romulo Pinho [Fri, 30 Mar 2012 12:18:28 +0000 (14:18 +0200)]
corrected #ifdef for AnimatedGIF screenshots
David Sarrut [Fri, 30 Mar 2012 11:45:08 +0000 (13:45 +0200)]
Add RemoveActors and modify SetDepth
David Sarrut [Fri, 30 Mar 2012 11:44:33 +0000 (13:44 +0200)]
Add RemoveActors
David Sarrut [Fri, 30 Mar 2012 11:43:20 +0000 (13:43 +0200)]
Call InitializeNewTool after tool constructor to allow reading in state file
David Sarrut [Fri, 30 Mar 2012 11:42:22 +0000 (13:42 +0200)]
Add mReadStateFlag mImageIndex m_XmlReader GetListOfTool
David Sarrut [Fri, 30 Mar 2012 11:41:36 +0000 (13:41 +0200)]
Add mReadStateFlag and mImageIndex
David Sarrut [Fri, 30 Mar 2012 11:41:19 +0000 (13:41 +0200)]
Cosmetic
Romulo Pinho [Fri, 30 Mar 2012 11:26:27 +0000 (13:26 +0200)]
bug in Z origin in clitkDicom2Image
- bug happened when using --std_input
David Sarrut [Fri, 30 Mar 2012 09:52:01 +0000 (11:52 +0200)]
Add SaveState and XmlReader capabilities
David Sarrut [Fri, 30 Mar 2012 09:24:30 +0000 (11:24 +0200)]
Cosmetic
David Sarrut [Fri, 30 Mar 2012 09:06:53 +0000 (11:06 +0200)]
Add "-h" in addition to "--help"
David Sarrut [Fri, 30 Mar 2012 09:06:34 +0000 (11:06 +0200)]
Add vvToolBaseBase.cc
David Sarrut [Fri, 30 Mar 2012 06:14:36 +0000 (08:14 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 28 Mar 2012 12:48:34 +0000 (14:48 +0200)]
small bug with landmark indices after deletion
Romulo Pinho [Wed, 28 Mar 2012 08:15:23 +0000 (10:15 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
git://git.creatis.insa-lyon.fr / clitk.git / log