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Creatis software - clitk.git/log
Gauthier Bouilhol [Wed, 29 Feb 2012 17:00:49 +0000 (18:00 +0100)]
Frame rate selection window added for ffmpeg and BitRateTolerance
forced to a non-zero value
Gauthier Bouilhol [Wed, 29 Feb 2012 16:25:39 +0000 (17:25 +0100)]
LINK_DIRECTORIES(${LIBSTATGRAB}/../lib) and
LINK_DIRECTORIES(${LIBSTATGRAB}/../lib64) added
Gauthier Bouilhol [Wed, 29 Feb 2012 13:39:34 +0000 (14:39 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Gauthier Bouilhol [Wed, 29 Feb 2012 13:38:23 +0000 (14:38 +0100)]
INCLUDE_DIRECTORIES(${LIBSTATGRAB}/../include) added to find statgrab.h
after make install of libstatgrab
Romulo Pinho [Wed, 29 Feb 2012 13:10:22 +0000 (14:10 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 29 Feb 2012 13:09:44 +0000 (14:09 +0100)]
corrected make install issue for Mac
Vivien Delmon [Wed, 29 Feb 2012 12:14:56 +0000 (13:14 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 29 Feb 2012 12:13:01 +0000 (13:13 +0100)]
Replace tabulations with space in pts_to_landmarks script
Romulo Pinho [Tue, 28 Feb 2012 12:25:47 +0000 (13:25 +0100)]
--centre added to BLUTDIR call in midP
Romulo Pinho [Tue, 28 Feb 2012 12:25:33 +0000 (13:25 +0100)]
initial image centralization (BLUT) is optional
- with --centre flag
Romulo Pinho [Tue, 28 Feb 2012 09:47:09 +0000 (10:47 +0100)]
added initial image centralization to BLUTDIR
Romulo Pinho [Fri, 24 Feb 2012 10:23:30 +0000 (11:23 +0100)]
small bug when opening .mat files in VV
Romulo Pinho [Wed, 22 Feb 2012 09:49:06 +0000 (10:49 +0100)]
replaced deprecated clitk tools in midP creation
Romulo Pinho [Wed, 22 Feb 2012 09:48:26 +0000 (10:48 +0100)]
added support to new vector type arithmetics
Romulo Pinho [Wed, 22 Feb 2012 09:48:01 +0000 (10:48 +0100)]
added support to new vector pixel types
Romulo Pinho [Tue, 21 Feb 2012 15:23:33 +0000 (16:23 +0100)]
correction in QVTK dependency
Romulo Pinho [Tue, 21 Feb 2012 14:36:40 +0000 (15:36 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 21 Feb 2012 14:35:54 +0000 (15:35 +0100)]
corrected error when opening 4D VFs
Romulo Pinho [Tue, 21 Feb 2012 14:34:51 +0000 (15:34 +0100)]
new vector cast filter
- contrary to ITK's equivalent, supports fields with different number components per pixel
Romulo Pinho [Tue, 21 Feb 2012 14:26:05 +0000 (15:26 +0100)]
Revert "corrected error when opening 4D vector fields"
This reverts commit
832f2cee39cf5f9c4eab850124dff5c96ea0b15c .
Romulo Pinho [Tue, 21 Feb 2012 14:14:51 +0000 (15:14 +0100)]
corrected error when opening 4D vector fields
Romulo Pinho [Tue, 21 Feb 2012 14:13:19 +0000 (15:13 +0100)]
itk4 compatibility
Simon Rit [Tue, 21 Feb 2012 13:09:32 +0000 (14:09 +0100)]
Removed typename outside template which prevents MSVC compilation
Simon Rit [Tue, 21 Feb 2012 12:34:16 +0000 (13:34 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 21 Feb 2012 09:11:32 +0000 (10:11 +0100)]
Add vtkQVTK to VTK_LIBRARIES for old VTK.
Romulo Pinho [Mon, 20 Feb 2012 14:32:38 +0000 (15:32 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 20 Feb 2012 14:31:27 +0000 (15:31 +0100)]
Added support to vector field arithmetics
Simon Rit [Mon, 20 Feb 2012 13:09:56 +0000 (14:09 +0100)]
Use real image center as default rotation center
Simon Rit [Mon, 20 Feb 2012 13:08:07 +0000 (14:08 +0100)]
Gui bug fix: x and z val were inverted
Romulo Pinho [Fri, 17 Feb 2012 14:36:50 +0000 (15:36 +0100)]
clitkSetBackground accepts vector fields
Romulo Pinho [Fri, 17 Feb 2012 10:02:29 +0000 (11:02 +0100)]
new SetBackground filter
- Accepts inputs and masks with different origins/spacings/dimensions. Only matching pixels are then processed. Non-mathcing pixels are directly copied from the input to the output.
- Inhreits from new filter: itk::FlexibleBinaryFunctorImageFilter
Simon Rit [Wed, 15 Feb 2012 16:19:32 +0000 (17:19 +0100)]
Added --help option for vv
Simon Rit [Tue, 14 Feb 2012 18:44:01 +0000 (19:44 +0100)]
Keep displayed angles in [-360,360] instead of [-180,180]
Simon Rit [Tue, 14 Feb 2012 08:30:36 +0000 (09:30 +0100)]
Removed typename outside template which prevents MSVC compilation
Simon Rit [Mon, 13 Feb 2012 17:03:43 +0000 (18:03 +0100)]
ITK v4 compatibility
Simon Rit [Mon, 13 Feb 2012 16:24:01 +0000 (17:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 13 Feb 2012 16:12:28 +0000 (17:12 +0100)]
itk4 compatibility
Romulo Pinho [Mon, 13 Feb 2012 15:25:24 +0000 (16:25 +0100)]
Removed unnecessary includes and dependencies
Simon Rit [Mon, 13 Feb 2012 13:28:08 +0000 (14:28 +0100)]
Put back and refactored manual rigid registration
Simon Rit [Mon, 13 Feb 2012 13:26:03 +0000 (14:26 +0100)]
Change font of matrix to typewriter type
Simon Rit [Mon, 13 Feb 2012 13:25:39 +0000 (14:25 +0100)]
Really hide input selector
Romulo Pinho [Fri, 10 Feb 2012 09:54:07 +0000 (10:54 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
common/clitkCoeffsToDVF.h
tools/clitkCoeffsToDVF.cxx
Romulo Pinho [Thu, 9 Feb 2012 16:55:24 +0000 (17:55 +0100)]
This is a combination of 3 commits.
new filter to convert from BLUT coeffs to DVF
- refactoring of clitkConvertBSplineDeformableTransformToVFGenericFilter
corrections in last commit
removal of redundant coeffs to dvf tool
- updates in original coeffs to dvf tool
+ new clitk class/filter
- related toos use the new clitk filter
Vivien Delmon [Thu, 9 Feb 2012 14:12:54 +0000 (15:12 +0100)]
BUG wrong tool name added to TOOLS_INSTALL
- clitkAffineTransform and clitkImageMoment were not added to
TOOLS_INSTALL. clitkDicom2Image was added multiple time instead.
Simon Rit [Wed, 8 Feb 2012 18:52:16 +0000 (19:52 +0100)]
Modified the string output of 4x4 matrix, now public for use in other
parts of the code
Simon Rit [Wed, 8 Feb 2012 18:45:04 +0000 (19:45 +0100)]
Remove warning for rtplan 2 gate tool
Gauthier Bouilhol [Wed, 8 Feb 2012 14:05:15 +0000 (15:05 +0100)]
small WRAP_GGO issue fixed
Gauthier Bouilhol [Wed, 8 Feb 2012 13:59:50 +0000 (14:59 +0100)]
clitkDicomRTPlan2Gate tool added
Romulo Pinho [Mon, 6 Feb 2012 14:13:30 +0000 (15:13 +0100)]
Convert coeffs to VF with itk bspline
- conversion with BLUT has bugs (grid appears in VF's jacobian with anisotropic spacing)
- disabled 4D convertion (spatio temporal)
- conversion with BLUT still possible (type = 1, not default)
- input coefficient image is always in BLUT style
- input is converted to is converted to ITK style (one image per component) if type = 0
Simon Rit [Sun, 5 Feb 2012 09:53:13 +0000 (10:53 +0100)]
Fixed cmake version problem
Simon Rit [Sat, 4 Feb 2012 11:29:05 +0000 (12:29 +0100)]
Missing typenames, MSVC is less strict than gcc on that
Simon Rit [Sat, 4 Feb 2012 10:42:07 +0000 (11:42 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 3 Feb 2012 17:30:06 +0000 (18:30 +0100)]
Fixed MSVC issues
Simon Rit [Fri, 3 Feb 2012 17:14:34 +0000 (18:14 +0100)]
Fixed issue when the package is called from another directory
Vivien Delmon [Fri, 3 Feb 2012 12:22:57 +0000 (13:22 +0100)]
Correct bug when opening non 3D vector field
- vvImageReader was opening vector field of nD vectors with the itk 3D
reader. Now we open the vector field with the appropriate itk reader
and then convert it to 3D vectors which are the only one supported by
vv.
David Sarrut [Fri, 3 Feb 2012 07:24:18 +0000 (08:24 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 3 Feb 2012 07:18:30 +0000 (08:18 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:17:46 +0000 (08:17 +0100)]
remove tools (now in tests_dav)
David Sarrut [Fri, 3 Feb 2012 07:13:46 +0000 (08:13 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 07:11:34 +0000 (08:11 +0100)]
remove clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:10:40 +0000 (08:10 +0100)]
add clitkExtractLymphStations
David Sarrut [Fri, 3 Feb 2012 07:06:43 +0000 (08:06 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:57:11 +0000 (07:57 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Fri, 3 Feb 2012 06:53:55 +0000 (07:53 +0100)]
Moved from repository clitk to clitk.private/deprecated
David Sarrut [Fri, 3 Feb 2012 06:52:24 +0000 (07:52 +0100)]
correct fuzzyMapOnlyFlag
Simon Rit [Thu, 2 Feb 2012 17:05:17 +0000 (18:05 +0100)]
Previous warning fix introduced a bug. Fixed
David Sarrut [Thu, 2 Feb 2012 16:06:04 +0000 (17:06 +0100)]
remove tools (now in tests_dav)
David Sarrut [Thu, 2 Feb 2012 16:03:43 +0000 (17:03 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 16:01:20 +0000 (17:01 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:44:55 +0000 (15:44 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 14:29:44 +0000 (15:29 +0100)]
Moved from repository clitk to clitk.private/tests_dav
David Sarrut [Thu, 2 Feb 2012 08:39:08 +0000 (09:39 +0100)]
Add ROI tab
David Sarrut [Thu, 2 Feb 2012 08:38:45 +0000 (09:38 +0100)]
First version of new ROI tool (the goal is to put it into the main tab and allow dcm-rt-struct to be loaded)
David Sarrut [Wed, 1 Feb 2012 06:20:06 +0000 (07:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 31 Jan 2012 19:08:06 +0000 (20:08 +0100)]
Update CMakeLists after moving tools to deprecated
Simon Rit [Tue, 31 Jan 2012 18:50:43 +0000 (19:50 +0100)]
Moved from repository clitk to clitk.private/deprecated
Simon Rit [Mon, 30 Jan 2012 13:32:05 +0000 (14:32 +0100)]
Stop rebuilding vv.o everytime cmake is executed. Only do it when
vv/CMakeLists.txt is newer than vvToolsList.h
Romulo Pinho [Fri, 27 Jan 2012 15:31:09 +0000 (16:31 +0100)]
fusion and image colormaps are now equivalent
- changed value range to (1, 1)
Romulo Pinho [Fri, 27 Jan 2012 15:09:49 +0000 (16:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 27 Jan 2012 15:09:09 +0000 (16:09 +0100)]
corrected bug in fusion opacity with double values
Romulo Pinho [Fri, 27 Jan 2012 15:05:06 +0000 (16:05 +0100)]
corrected bug in fusion with double values
Romulo Pinho [Thu, 26 Jan 2012 14:35:00 +0000 (15:35 +0100)]
bug in mhd 4D creation
Romulo Pinho [Thu, 26 Jan 2012 13:06:44 +0000 (14:06 +0100)]
ComposeVF with type 0 as default
Romulo Pinho [Thu, 26 Jan 2012 13:05:51 +0000 (14:05 +0100)]
correction in ComposeVF options
Romulo Pinho [Thu, 26 Jan 2012 12:46:11 +0000 (13:46 +0100)]
accepts suffix for 4D mhd creation
Romulo Pinho [Wed, 25 Jan 2012 14:47:22 +0000 (15:47 +0100)]
changes in CoeffsToDVF interface
- affected tools...
Romulo Pinho [Wed, 25 Jan 2012 14:46:23 +0000 (15:46 +0100)]
new tool: clitkCoeffsToDVF
- converts a BLUT-coefficient image to a DVF
Romulo Pinho [Tue, 24 Jan 2012 13:50:43 +0000 (14:50 +0100)]
more robust clitkExtractLung
- quits with exception when no seed is found for trachea
Romulo Pinho [Thu, 19 Jan 2012 16:51:00 +0000 (17:51 +0100)]
refactoring...
- Put coeff to dvf function in separate file, as a global function
- Changed affected files/classes
Romulo Pinho [Thu, 19 Jan 2012 16:39:42 +0000 (17:39 +0100)]
image warping using B-Spline coefficients
- uses the resolution of the input image for the output
Romulo Pinho [Wed, 18 Jan 2012 17:28:16 +0000 (18:28 +0100)]
Invert VF from B-Spline coefficients
- Interpolate VF first, from coeffs, using --like image
Romulo Pinho [Wed, 18 Jan 2012 16:51:04 +0000 (17:51 +0100)]
VF composition with BSpline coefficients
- output resolution taken from --like image
Romulo Pinho [Tue, 10 Jan 2012 15:36:21 +0000 (16:36 +0100)]
invert Vf on given image grid with resampler
- linear interpolation (itk resampler's default)
- undoes previous version
Romulo Pinho [Tue, 10 Jan 2012 14:18:12 +0000 (15:18 +0100)]
invert VF on given image grid
- with --like option
David Sarrut [Thu, 5 Jan 2012 14:44:12 +0000 (15:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 4 Jan 2012 15:48:10 +0000 (16:48 +0100)]
Adapted crop for vector fields with partial specialization to generate
exceptions for AutoCrop of VF
Simon Rit [Wed, 4 Jan 2012 15:47:51 +0000 (16:47 +0100)]
Provide ADD_DEFAULT_VEC_IMAGE_TYPES for generic VF filters
David Sarrut [Wed, 4 Jan 2012 14:53:54 +0000 (15:53 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 28 Dec 2011 13:27:46 +0000 (14:27 +0100)]
BUG Don't try to change the VF color on cancel.
- Test the validity of the color returned by the QColorDialog before
changing the VF color.
Vivien Delmon [Tue, 27 Dec 2011 14:49:12 +0000 (15:49 +0100)]
Add Overlay properties to SaveState / ReadState
- Use vvSlicerManagers to Get/Set Overlay properties.